RNA–Protein interactions for RNA: ENST00000471246.1

UBXN4-207, Transcript of UBX domain protein 4, humanhuman

TSL 3

Gene UBXN4, Length 395 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-207ENST00000471246 Q8N8P6 123 aa-0.57□□□□□ -2.5
UBXN4-207ENST00000471246 OR13C6PQ8NH95 151 aa-0.57□□□□□ -2.5
UBXN4-207ENST00000471246 PPP1R1CQ8WVI7 109 aa-0.57□□□□□ -2.5
UBXN4-207ENST00000471246 TMEM141Q96I45 108 aa-0.57□□□□□ -2.5
UBXN4-207ENST00000471246 SPANXDQ9BXN6 97 aa-0.57□□□□□ -2.5
UBXN4-207ENST00000471246 R4GMQ9 66 aa-0.57□□□□□ -2.5
UBXN4-207ENST00000471246 A0A087WXM4 84 aa-0.58□□□□□ -2.5
UBXN4-207ENST00000471246 CEBPZOSA8MTT3 80 aa-0.58□□□□□ -2.5
UBXN4-207ENST00000471246 C5orf58C9J3I9 102 aa-0.58□□□□□ -2.5
UBXN4-207ENST00000471246 M0R129 80 aa-0.58□□□□□ -2.5
UBXN4-207ENST00000471246 IGKCP01834 107 aa-0.58□□□□□ -2.5
UBXN4-207ENST00000471246 CCKP06307 115 aa-0.58□□□□□ -2.5
UBXN4-207ENST00000471246 SMIM13P0DJ93 91 aa-0.58□□□□□ -2.5
UBXN4-207ENST00000471246 S100GP29377 79 aa-0.58□□□□□ -2.5
UBXN4-207ENST00000471246 RRAS2P62070 204 aaPredicted RBP-0.58□□□□□ -2.5
UBXN4-207ENST00000471246 RGS21Q2M5E4 152 aa-0.58□□□□□ -2.5
UBXN4-207ENST00000471246 RPL7L1Q6DKI1 246 aaKnown RBP-0.58□□□□□ -2.5
UBXN4-207ENST00000471246 SMIM15Q7Z3B0 74 aa-0.58□□□□□ -2.5
UBXN4-207ENST00000471246 S100ZQ8WXG8 99 aa-0.58□□□□□ -2.5
UBXN4-207ENST00000471246 MAGOHBQ96A72 148 aaKnown RBP-0.58□□□□□ -2.5
UBXN4-207ENST00000471246 FAM167A-AS1Q96KT0 104 aa-0.58□□□□□ -2.5
UBXN4-207ENST00000471246 OTORQ9NRC9 128 aa-0.58□□□□□ -2.5
UBXN4-207ENST00000471246 LAMTOR2Q9Y2Q5 125 aa-0.58□□□□□ -2.5
UBXN4-207ENST00000471246 TRDV1A0A1B0GX56 115 aa-0.59□□□□□ -2.5
UBXN4-207ENST00000471246 C9JAW5 83 aa-0.59□□□□□ -2.5
UBXN4-207ENST00000471246 H3BQF6 201 aa-0.59□□□□□ -2.5
UBXN4-207ENST00000471246 ATOX1O00244 68 aa-0.59□□□□□ -2.5
UBXN4-207ENST00000471246 G0S2P27469 103 aa-0.59□□□□□ -2.5
UBXN4-207ENST00000471246 RPL39P62891 51 aaKnown RBP-0.59□□□□□ -2.5
UBXN4-207ENST00000471246 MNS1Q8NEH6 495 aa-0.59□□□□□ -2.5
UBXN4-207ENST00000471246 RPL39LQ96EH5 51 aaKnown RBP-0.59□□□□□ -2.5
UBXN4-207ENST00000471246 TPT1P8Q9HAU6 139 aa-0.59□□□□□ -2.5
UBXN4-207ENST00000471246 GID8Q9NWU2 228 aa-0.59□□□□□ -2.5
UBXN4-207ENST00000471246 PSENENQ9NZ42 101 aa-0.59□□□□□ -2.5
UBXN4-207ENST00000471246 V9GYV3 84 aa-0.59□□□□□ -2.5
UBXN4-207ENST00000471246 CHKB-CPT1BH3BT56 60 aa-0.6□□□□□ -2.51
UBXN4-207ENST00000471246 SFT2D2O95562 160 aa-0.6□□□□□ -2.51
UBXN4-207ENST00000471246 PYYP10082 97 aa-0.6□□□□□ -2.51
UBXN4-207ENST00000471246 PPP1R2P41236 205 aa-0.6□□□□□ -2.51
UBXN4-207ENST00000471246 RPS25P62851 125 aaKnown RBP-0.6□□□□□ -2.51
UBXN4-207ENST00000471246 PPP3R1P63098 170 aa-0.6□□□□□ -2.51
UBXN4-207ENST00000471246 NREPQ16612 68 aa-0.6□□□□□ -2.51
UBXN4-207ENST00000471246 ACBD7Q8N6N7 88 aa-0.6□□□□□ -2.51
UBXN4-207ENST00000471246 C20orf78Q9BR46 151 aa-0.6□□□□□ -2.51
UBXN4-207ENST00000471246 SEC11CQ9BY50 192 aa-0.6□□□□□ -2.51
UBXN4-207ENST00000471246 BANF2Q9H503 90 aa-0.6□□□□□ -2.51
UBXN4-207ENST00000471246 TMEM167BQ9NRX6 74 aa-0.6□□□□□ -2.51
UBXN4-207ENST00000471246 SPANXCQ9NY87 97 aa-0.6□□□□□ -2.51
UBXN4-207ENST00000471246 DNAJC15Q9Y5T4 150 aa-0.6□□□□□ -2.51
UBXN4-207ENST00000471246 PIGBOS1A0A0B4J2F0 54 aa-0.61□□□□□ -2.51
UBXN4-207ENST00000471246 MYMXA0A1B0GTQ4 84 aa-0.61□□□□□ -2.51
UBXN4-207ENST00000471246 TMEM218A2RU14 115 aa-0.61□□□□□ -2.51
UBXN4-207ENST00000471246 LINC01549A6NIU2 74 aa-0.61□□□□□ -2.51
UBXN4-207ENST00000471246 ZNF670-ZNF695F2Z2N8 137 aa-0.61□□□□□ -2.51
UBXN4-207ENST00000471246 SMIM24O75264 130 aa-0.61□□□□□ -2.51
UBXN4-207ENST00000471246 LEPROTL1O95214 131 aa-0.61□□□□□ -2.51
UBXN4-207ENST00000471246 HBDP02042 147 aa-0.61□□□□□ -2.51
UBXN4-207ENST00000471246 APOC2P02655 101 aa-0.61□□□□□ -2.51
UBXN4-207ENST00000471246 SELENOWP63302 87 aa-0.61□□□□□ -2.51
UBXN4-207ENST00000471246 CCDC153Q494R4 210 aa-0.61□□□□□ -2.51
UBXN4-207ENST00000471246 ANP32BQ92688 251 aaKnown RBP-0.61□□□□□ -2.51
UBXN4-207ENST00000471246 GSKIPQ9P0R6 139 aa-0.61□□□□□ -2.51
UBXN4-207ENST00000471246 LSM2Q9Y333 95 aaKnown RBP-0.61□□□□□ -2.51
UBXN4-207ENST00000471246 IGIPA6NJ69 53 aa-0.62□□□□□ -2.51
UBXN4-207ENST00000471246 K7EMI3 77 aa-0.62□□□□□ -2.51
UBXN4-207ENST00000471246 ARPC5O15511 151 aa-0.62□□□□□ -2.51
UBXN4-207ENST00000471246 FAM107AO95990 144 aa-0.62□□□□□ -2.51
UBXN4-207ENST00000471246 HMGN1P05114 100 aa-0.62□□□□□ -2.51
UBXN4-207ENST00000471246 SMIM11AP58511 58 aa-0.62□□□□□ -2.51
UBXN4-207ENST00000471246 RPL38P63173 70 aaKnown RBP-0.62□□□□□ -2.51
UBXN4-207ENST00000471246 CROCCP2Q86T23 111 aa-0.62□□□□□ -2.51
UBXN4-207ENST00000471246 COPS9Q8WXC6 57 aa-0.62□□□□□ -2.51
UBXN4-207ENST00000471246 PPP3R2Q96LZ3 170 aa-0.62□□□□□ -2.51
UBXN4-207ENST00000471246 CMC2Q9NRP2 79 aa-0.62□□□□□ -2.51
UBXN4-207ENST00000471246 PAIP2BQ9ULR5 123 aaKnown RBP-0.62□□□□□ -2.51
UBXN4-207ENST00000471246 UQCRQO14949 82 aa-0.63□□□□□ -2.51
UBXN4-207ENST00000471246 IGLC3P0DOY3 106 aa-0.63□□□□□ -2.51
UBXN4-207ENST00000471246 SMIM11BQ8TCY0 68 aa-0.63□□□□□ -2.51
UBXN4-207ENST00000471246 SMIM7Q9BQ49 75 aa-0.63□□□□□ -2.51
UBXN4-207ENST00000471246 TCEAL7Q9BRU2 100 aa-0.63□□□□□ -2.51
UBXN4-207ENST00000471246 SAR1AQ9NR31 198 aa-0.63□□□□□ -2.51
UBXN4-207ENST00000471246 HSPB11Q9Y547 144 aa-0.63□□□□□ -2.51
UBXN4-207ENST00000471246 A0A1W2PRE2 83 aa-0.64□□□□□ -2.51
UBXN4-207ENST00000471246 H0Y9P7 68 aa-0.64□□□□□ -2.51
UBXN4-207ENST00000471246 H0YGX0 51 aa-0.64□□□□□ -2.51
UBXN4-207ENST00000471246 LINC00032P0C843 101 aa-0.64□□□□□ -2.51
UBXN4-207ENST00000471246 GCHFRP30047 84 aa-0.64□□□□□ -2.51
UBXN4-207ENST00000471246 SDC2P34741 201 aa-0.64□□□□□ -2.51
UBXN4-207ENST00000471246 TMEM170BQ5T4T1 132 aa-0.64□□□□□ -2.51
UBXN4-207ENST00000471246 LINC00308Q8TCZ7 52 aa-0.64□□□□□ -2.51
UBXN4-207ENST00000471246 GNG8Q9UK08 70 aa-0.64□□□□□ -2.51
UBXN4-207ENST00000471246 BORCS7-ASMTA0A0B4J1R7 106 aa-0.65□□□□□ -2.51
UBXN4-207ENST00000471246 MPC2O95563 127 aa-0.65□□□□□ -2.51
UBXN4-207ENST00000471246 S100A11P31949 105 aa-0.65□□□□□ -2.51
UBXN4-207ENST00000471246 CKS2P33552 79 aa-0.65□□□□□ -2.51
UBXN4-207ENST00000471246 GNG2P59768 71 aa-0.65□□□□□ -2.51
UBXN4-207ENST00000471246 SERF2P84101 59 aa-0.65□□□□□ -2.51
UBXN4-207ENST00000471246 A0A1B0GU69 56 aa-0.66□□□□□ -2.52
UBXN4-207ENST00000471246 A0A1B0GUT8 65 aa-0.66□□□□□ -2.52
UBXN4-207ENST00000471246 J3QLW9 94 aa-0.66□□□□□ -2.52
Retrieved 100 of 20,778 RNA–protein pairs in 100.4 ms