RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 MT4P47944 62 aa2.1□□□□□ -2.07
PTPN4-209ENST00000469511 ORMDL1Q9P0S3 153 aa2.1□□□□□ -2.07
PTPN4-209ENST00000469511 PRO2289Q9P1D8 64 aa2.1□□□□□ -2.07
PTPN4-209ENST00000469511 A0A0B4J2C4 111 aa2.09□□□□□ -2.07
PTPN4-209ENST00000469511 K7EQZ3 153 aa2.09□□□□□ -2.07
PTPN4-209ENST00000469511 PRR15Q8IV56 129 aa2.09□□□□□ -2.07
PTPN4-209ENST00000469511 TMEM254Q8TBM7 123 aa2.09□□□□□ -2.07
PTPN4-209ENST00000469511 C1orf64Q8NEQ6 169 aa2.08□□□□□ -2.08
PTPN4-209ENST00000469511 TMEM256-PLSCR3K7ERE1 68 aa2.07□□□□□ -2.08
PTPN4-209ENST00000469511 KRTAP5-7Q6L8G8 165 aa2.07□□□□□ -2.08
PTPN4-209ENST00000469511 CRIPTQ9P021 101 aa2.07□□□□□ -2.08
PTPN4-209ENST00000469511 hDV103S1A0JD37 113 aa2.06□□□□□ -2.08
PTPN4-209ENST00000469511 PRO1854Q9UHT4 67 aa2.06□□□□□ -2.08
PTPN4-209ENST00000469511 DNAL4O96015 105 aa2.05□□□□□ -2.08
PTPN4-209ENST00000469511 COX8AP10176 69 aa2.05□□□□□ -2.08
PTPN4-209ENST00000469511 FXYD2P54710 66 aa2.05□□□□□ -2.08
PTPN4-209ENST00000469511 C14orf144Q96I85 54 aa2.05□□□□□ -2.08
PTPN4-209ENST00000469511 C9JAW5 83 aa2.04□□□□□ -2.08
PTPN4-209ENST00000469511 PLAC4Q8WY50 150 aa2.04□□□□□ -2.08
PTPN4-209ENST00000469511 SPRR5A0A1B0GTR4 108 aa2.03□□□□□ -2.08
PTPN4-209ENST00000469511 A8MUN3 132 aa2.03□□□□□ -2.08
PTPN4-209ENST00000469511 HSBP1L1C9JCN9 74 aa2.03□□□□□ -2.08
PTPN4-209ENST00000469511 K7ERJ3 54 aa2.03□□□□□ -2.08
PTPN4-209ENST00000469511 HCG22E2RYF7 251 aa2.02□□□□□ -2.09
PTPN4-209ENST00000469511 HIST1H2BLQ99880 126 aa2.02□□□□□ -2.09
PTPN4-209ENST00000469511 PRO0461Q9UI25 63 aa2.02□□□□□ -2.09
PTPN4-209ENST00000469511 H3BQ85 93 aa2.01□□□□□ -2.09
PTPN4-209ENST00000469511 DLEU1O43261 78 aa2.01□□□□□ -2.09
PTPN4-209ENST00000469511 BAALC-AS2P0C853 105 aa2.01□□□□□ -2.09
PTPN4-209ENST00000469511 PSMB2P49721 201 aa2.01□□□□□ -2.09
PTPN4-209ENST00000469511 HIST3H2BBQ8N257 126 aa2.01□□□□□ -2.09
PTPN4-209ENST00000469511 HIGD1BQ9P298 99 aa2.01□□□□□ -2.09
PTPN4-209ENST00000469511 KRTAP19-7Q3SYF9 63 aa2□□□□□ -2.09
PTPN4-209ENST00000469511 ADM2Q7Z4H4 148 aa2□□□□□ -2.09
PTPN4-209ENST00000469511 NREPQ16612 68 aa1.99□□□□□ -2.09
PTPN4-209ENST00000469511 KRTAP19-3Q7Z4W3 81 aa1.99□□□□□ -2.09
PTPN4-209ENST00000469511 PDE6GP18545 87 aa1.98□□□□□ -2.09
PTPN4-209ENST00000469511 C14orf132Q9NPU4 83 aa1.98□□□□□ -2.09
PTPN4-209ENST00000469511 LOC110117498A0A087WWA1 95 aa1.97□□□□□ -2.09
PTPN4-209ENST00000469511 BPY2O14599 106 aa1.97□□□□□ -2.09
PTPN4-209ENST00000469511 MT1EP04732 61 aa1.97□□□□□ -2.09
PTPN4-209ENST00000469511 KRTAP5-4Q6L8H1 288 aa1.97□□□□□ -2.09
PTPN4-209ENST00000469511 CASC2Q6XLA1 102 aa1.97□□□□□ -2.09
PTPN4-209ENST00000469511 CYSTM1Q9H1C7 97 aa1.97□□□□□ -2.09
PTPN4-209ENST00000469511 H0YAA0 97 aa1.96□□□□□ -2.1
PTPN4-209ENST00000469511 P0C880 135 aa1.96□□□□□ -2.1
PTPN4-209ENST00000469511 SPATA45Q537H7 98 aa1.96□□□□□ -2.1
PTPN4-209ENST00000469511 K7EP34 96 aa1.95□□□□□ -2.1
PTPN4-209ENST00000469511 COX6CP09669 75 aa1.95□□□□□ -2.1
PTPN4-209ENST00000469511 A0A1B0GW54 56 aa1.94□□□□□ -2.1
PTPN4-209ENST00000469511 SCGB1C2P0DMR2 95 aa1.94□□□□□ -2.1
PTPN4-209ENST00000469511 S100A2P29034 98 aa1.94□□□□□ -2.1
PTPN4-209ENST00000469511 KRTAP4-3Q9BYR4 195 aa1.94□□□□□ -2.1
PTPN4-209ENST00000469511 JMJD7-PLA2G4BH0Y9G9 81 aa1.93□□□□□ -2.1
PTPN4-209ENST00000469511 LINC01554Q52M75 96 aa1.93□□□□□ -2.1
PTPN4-209ENST00000469511 M0QZ58 72 aa1.92□□□□□ -2.1
PTPN4-209ENST00000469511 NAA38Q9BRA0 125 aaKnown RBP1.92□□□□□ -2.1
PTPN4-209ENST00000469511 R4GN34 69 aa1.92□□□□□ -2.1
PTPN4-209ENST00000469511 NDUFC1O43677 76 aa1.91□□□□□ -2.1
PTPN4-209ENST00000469511 HSD52Q0P140 79 aa1.9□□□□□ -2.11
PTPN4-209ENST00000469511 KRTAP5-1Q6L8H4 278 aa1.9□□□□□ -2.11
PTPN4-209ENST00000469511 MT1MQ8N339 61 aa1.9□□□□□ -2.11
PTPN4-209ENST00000469511 CYP4F30PQ9H0H9 118 aa1.9□□□□□ -2.11
PTPN4-209ENST00000469511 MT1GP13640 62 aa1.89□□□□□ -2.11
PTPN4-209ENST00000469511 VAMP8Q9BV40 100 aa1.89□□□□□ -2.11
PTPN4-209ENST00000469511 ATXN8Q156A1 80 aa1.88□□□□□ -2.11
PTPN4-209ENST00000469511 KRTAP20-2Q3LI61 65 aa1.88□□□□□ -2.11
PTPN4-209ENST00000469511 LCE3AQ5TA76 89 aa1.88□□□□□ -2.11
PTPN4-209ENST00000469511 SMIM26A0A096LP01 95 aa1.87□□□□□ -2.11
PTPN4-209ENST00000469511 KRTAP19-5Q3LI72 72 aa1.86□□□□□ -2.11
PTPN4-209ENST00000469511 S100A6P06703 90 aa1.85□□□□□ -2.11
PTPN4-209ENST00000469511 LCE3DQ9BYE3 92 aa1.85□□□□□ -2.11
PTPN4-209ENST00000469511 SPANXA2-OT1Q8N9U9 137 aa1.84□□□□□ -2.11
PTPN4-209ENST00000469511 MT1LQ93083 61 aa1.84□□□□□ -2.11
PTPN4-209ENST00000469511 AHNAKQ09666 5890 aaKnown RBP1.83□□□□□ -2.12
PTPN4-209ENST00000469511 PP632Q6XCG6 107 aa1.83□□□□□ -2.12
PTPN4-209ENST00000469511 MUC5ACP98088 5654 aa1.81□□□□□ -2.12
PTPN4-209ENST00000469511 MUC5BQ9HC84 5762 aaPredicted RBP1.81□□□□□ -2.12
PTPN4-209ENST00000469511 PSPHP1O15172 72 aa1.81□□□□□ -2.12
PTPN4-209ENST00000469511 BATFQ16520 125 aa1.81□□□□□ -2.12
PTPN4-209ENST00000469511 TP53AIP1Q9HCN2 124 aa1.81□□□□□ -2.12
PTPN4-209ENST00000469511 A0A1W2PPM0 123 aa1.8□□□□□ -2.12
PTPN4-209ENST00000469511 ACYP1P07311 99 aa1.8□□□□□ -2.12
PTPN4-209ENST00000469511 S100A1P23297 94 aa1.8□□□□□ -2.12
PTPN4-209ENST00000469511 PYY3Q5JQD4 70 aa1.8□□□□□ -2.12
PTPN4-209ENST00000469511 TRAV22A0A0B4J277 110 aa1.79□□□□□ -2.12
PTPN4-209ENST00000469511 LOC101927531A0A1B0GV80 90 aa1.79□□□□□ -2.12
PTPN4-209ENST00000469511 KRTAP4-4Q9BYR3 166 aa1.79□□□□□ -2.12
PTPN4-209ENST00000469511 SYNE1Q8NF91 8797 aaKnown RBP1.78□□□□□ -2.12
PTPN4-209ENST00000469511 C20orf197Q8N268 126 aa1.78□□□□□ -2.12
PTPN4-209ENST00000469511 UQCR10Q9UDW1 63 aa1.78□□□□□ -2.12
PTPN4-209ENST00000469511 SPCS1Q9Y6A9 102 aa1.78□□□□□ -2.12
PTPN4-209ENST00000469511 A0A0D9SG42 100 aa1.77□□□□□ -2.13
PTPN4-209ENST00000469511 KRTAP5-8O75690 187 aa1.77□□□□□ -2.13
PTPN4-209ENST00000469511 MT-ATP8P03928 68 aa1.77□□□□□ -2.13
PTPN4-209ENST00000469511 KRTAP5-5Q701N2 237 aaPredicted RBP1.77□□□□□ -2.13
PTPN4-209ENST00000469511 TSTD3H0UI37 97 aa1.76□□□□□ -2.13
PTPN4-209ENST00000469511 LUZP6Q538Z0 58 aa1.76□□□□□ -2.13
PTPN4-209ENST00000469511 H3BT86 120 aa1.75□□□□□ -2.13
PTPN4-209ENST00000469511 SPINT4Q6UDR6 99 aa1.75□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms