RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 VPS13CQ709C8 3753 aa3.28□□□□□ -1.88
NEDD9-204ENST00000448183 CSMD3Q7Z407 3707 aa3.27□□□□□ -1.89
NEDD9-204ENST00000448183 TRRAPQ9Y4A5 3859 aa3.26□□□□□ -1.89
NEDD9-204ENST00000448183 KRTAP4-5Q9BYR2 181 aa3.25□□□□□ -1.89
NEDD9-204ENST00000448183 DNHD1Q96M86 4753 aa3.25□□□□□ -1.89
NEDD9-204ENST00000448183 LCE2DQ5TA82 110 aaPredicted RBP3.22□□□□□ -1.89
NEDD9-204ENST00000448183 ZNF469Q96JG9 3925 aaPredicted RBP3.22□□□□□ -1.89
NEDD9-204ENST00000448183 ANK2Q01484 3957 aa3.18□□□□□ -1.9
NEDD9-204ENST00000448183 KRTAP10-5P60370 271 aa3.17□□□□□ -1.9
NEDD9-204ENST00000448183 DNAH6Q9C0G6 4158 aa3.15□□□□□ -1.91
NEDD9-204ENST00000448183 DNAH9Q9NYC9 4486 aa3.14□□□□□ -1.91
NEDD9-204ENST00000448183 DNAH10Q8IVF4 4471 aa3.13□□□□□ -1.91
NEDD9-204ENST00000448183 KRTAP8-1Q8IUC2 63 aa3.11□□□□□ -1.91
NEDD9-204ENST00000448183 DNAH1Q9P2D7 4330 aa3.11□□□□□ -1.91
NEDD9-204ENST00000448183 DYNC2H1Q8NCM8 4307 aaKnown RBP3.09□□□□□ -1.92
NEDD9-204ENST00000448183 DNAH11Q96DT5 4516 aa3.08□□□□□ -1.92
NEDD9-204ENST00000448183 DNAH2Q9P225 4427 aa3.08□□□□□ -1.92
NEDD9-204ENST00000448183 DNAH17Q9UFH2 4485 aa3.07□□□□□ -1.92
NEDD9-204ENST00000448183 VPS13DQ5THJ4 4388 aa3.07□□□□□ -1.92
NEDD9-204ENST00000448183 DNAH3Q8TD57 4116 aa3.07□□□□□ -1.92
NEDD9-204ENST00000448183 KRTAP4-1Q9BYQ7 146 aa3.06□□□□□ -1.92
NEDD9-204ENST00000448183 DNAH5Q8TE73 4624 aa3.06□□□□□ -1.92
NEDD9-204ENST00000448183 FAT1Q14517 4588 aa3.05□□□□□ -1.92
NEDD9-204ENST00000448183 CMYA5Q8N3K9 4069 aa3.05□□□□□ -1.92
NEDD9-204ENST00000448183 PLECQ15149 4684 aaKnown RBP3.04□□□□□ -1.92
NEDD9-204ENST00000448183 SPRR2GQ9BYE4 73 aa3.04□□□□□ -1.92
NEDD9-204ENST00000448183 MT2AP02795 61 aa3.01□□□□□ -1.93
NEDD9-204ENST00000448183 MT1HP80294 61 aa3.01□□□□□ -1.93
NEDD9-204ENST00000448183 DYNC1H1Q14204 4646 aaKnown RBP2.96□□□□□ -1.93
NEDD9-204ENST00000448183 PRKDCP78527 4128 aaKnown RBP2.96□□□□□ -1.94
NEDD9-204ENST00000448183 KRTAP19-5Q3LI72 72 aa2.95□□□□□ -1.94
NEDD9-204ENST00000448183 LCE3CQ5T5A8 94 aa2.95□□□□□ -1.94
NEDD9-204ENST00000448183 MT1FP04733 61 aa2.94□□□□□ -1.94
NEDD9-204ENST00000448183 DNAH8Q96JB1 4490 aa2.92□□□□□ -1.94
NEDD9-204ENST00000448183 KRTAP19-4Q3LI73 84 aa2.92□□□□□ -1.94
NEDD9-204ENST00000448183 SACSQ9NZJ4 4579 aa2.91□□□□□ -1.94
NEDD9-204ENST00000448183 KRTAP10-7P60409 375 aaPredicted RBP2.89□□□□□ -1.95
NEDD9-204ENST00000448183 LRP1BQ9NZR2 4599 aa2.88□□□□□ -1.95
NEDD9-204ENST00000448183 STARD9Q9P2P6 4700 aa2.87□□□□□ -1.95
NEDD9-204ENST00000448183 FAT2Q9NYQ8 4349 aa2.87□□□□□ -1.95
NEDD9-204ENST00000448183 RYR3Q15413 4870 aa2.87□□□□□ -1.95
NEDD9-204ENST00000448183 DNAH7Q8WXX0 4024 aa2.87□□□□□ -1.95
NEDD9-204ENST00000448183 SPRR2FQ96RM1 72 aa2.87□□□□□ -1.95
NEDD9-204ENST00000448183 KMT2CQ8NEZ4 4911 aaKnown RBP2.86□□□□□ -1.95
NEDD9-204ENST00000448183 RYR1P21817 5038 aa2.85□□□□□ -1.95
NEDD9-204ENST00000448183 BIRC6Q9NR09 4857 aa2.85□□□□□ -1.95
NEDD9-204ENST00000448183 HERC1Q15751 4861 aa2.83□□□□□ -1.96
NEDD9-204ENST00000448183 RYR2Q92736 4967 aa2.82□□□□□ -1.96
NEDD9-204ENST00000448183 HSPG2P98160 4391 aa2.82□□□□□ -1.96
NEDD9-204ENST00000448183 KRTAP19-8Q3LI54 63 aa2.81□□□□□ -1.96
NEDD9-204ENST00000448183 KRTAP19-1Q8IUB9 90 aa2.81□□□□□ -1.96
NEDD9-204ENST00000448183 LYSTQ99698 3801 aa2.8□□□□□ -1.96
NEDD9-204ENST00000448183 APOBP04114 4563 aaKnown RBP2.77□□□□□ -1.97
NEDD9-204ENST00000448183 FAT3Q8TDW7 4589 aa2.77□□□□□ -1.97
NEDD9-204ENST00000448183 SPRR5A0A1B0GTR4 108 aa2.75□□□□□ -1.97
NEDD9-204ENST00000448183 EPPK1P58107 5090 aaKnown RBP2.75□□□□□ -1.97
NEDD9-204ENST00000448183 PKHD1L1Q86WI1 4243 aa2.75□□□□□ -1.97
NEDD9-204ENST00000448183 MYCBP2O75592 4640 aa2.75□□□□□ -1.97
NEDD9-204ENST00000448183 KRTAP12-4P60329 112 aa2.74□□□□□ -1.97
NEDD9-204ENST00000448183 MT1XP80297 61 aa2.74□□□□□ -1.97
NEDD9-204ENST00000448183 VPS13BQ7Z7G8 4022 aa2.74□□□□□ -1.97
NEDD9-204ENST00000448183 LRP1Q07954 4544 aaKnown RBP2.73□□□□□ -1.97
NEDD9-204ENST00000448183 FRAS1Q86XX4 4008 aa2.73□□□□□ -1.97
NEDD9-204ENST00000448183 LCE3BQ5TA77 95 aa2.72□□□□□ -1.97
NEDD9-204ENST00000448183 HYDINQ4G0P3 5121 aa2.71□□□□□ -1.98
NEDD9-204ENST00000448183 KMT2AQ03164 3969 aa2.7□□□□□ -1.98
NEDD9-204ENST00000448183 MT1BP07438 61 aa2.7□□□□□ -1.98
NEDD9-204ENST00000448183 HECTD4Q9Y4D8 3996 aa2.69□□□□□ -1.98
NEDD9-204ENST00000448183 HERC2O95714 4834 aa2.68□□□□□ -1.98
NEDD9-204ENST00000448183 MT1GP13640 62 aa2.67□□□□□ -1.98
NEDD9-204ENST00000448183 KRTAP17-1Q9BYP8 105 aa2.67□□□□□ -1.98
NEDD9-204ENST00000448183 KIAA1109Q2LD37 5005 aa2.65□□□□□ -1.98
NEDD9-204ENST00000448183 PKHD1P08F94 4074 aa2.65□□□□□ -1.99
NEDD9-204ENST00000448183 SPRR2EP22531 72 aa2.64□□□□□ -1.99
NEDD9-204ENST00000448183 SPRR2BP35325 72 aa2.64□□□□□ -1.99
NEDD9-204ENST00000448183 SPRR2AP35326 72 aa2.64□□□□□ -1.99
NEDD9-204ENST00000448183 KRTAP9-8Q9BYQ0 159 aa2.64□□□□□ -1.99
NEDD9-204ENST00000448183 KRTAP4-8A0A0G2JLE6 195 aa2.62□□□□□ -1.99
NEDD9-204ENST00000448183 KRTAP4-8Q9BYQ9 185 aa2.62□□□□□ -1.99
NEDD9-204ENST00000448183 LCE2BO14633 110 aa2.62□□□□□ -1.99
NEDD9-204ENST00000448183 LCE3DQ9BYE3 92 aa2.62□□□□□ -1.99
NEDD9-204ENST00000448183 PKD1P98161 4303 aa2.61□□□□□ -1.99
NEDD9-204ENST00000448183 PCLOQ9Y6V0 5065 aa2.61□□□□□ -1.99
NEDD9-204ENST00000448183 LCE2AQ5TA79 106 aaPredicted RBP2.6□□□□□ -1.99
NEDD9-204ENST00000448183 LCE3EQ5T5B0 92 aa2.59□□□□□ -1.99
NEDD9-204ENST00000448183 LCE2CQ5TA81 110 aa2.59□□□□□ -1.99
NEDD9-204ENST00000448183 KRTAP9-3Q9BYQ3 159 aa2.58□□□□□ -2
NEDD9-204ENST00000448183 MUC17Q685J3 4493 aa2.58□□□□□ -2
NEDD9-204ENST00000448183 KRTAP19-2Q3LHN2 52 aa2.56□□□□□ -2
NEDD9-204ENST00000448183 SYNE1Q8NF91 8797 aaKnown RBP2.56□□□□□ -2
NEDD9-204ENST00000448183 SPRR2DP22532 72 aa2.56□□□□□ -2
NEDD9-204ENST00000448183 ABCA13Q86UQ4 5058 aa2.55□□□□□ -2
NEDD9-204ENST00000448183 MT1LQ93083 61 aa2.52□□□□□ -2.01
NEDD9-204ENST00000448183 KRTAP19-3Q7Z4W3 81 aa2.51□□□□□ -2.01
NEDD9-204ENST00000448183 KRTAP4-7Q9BYR0 210 aa2.5□□□□□ -2.01
NEDD9-204ENST00000448183 LRP2P98164 4655 aa2.5□□□□□ -2.01
NEDD9-204ENST00000448183 MT1EP04732 61 aa2.47□□□□□ -2.01
NEDD9-204ENST00000448183 TNXBP22105 4242 aa2.45□□□□□ -2.02
NEDD9-204ENST00000448183 KRTAP19-6Q3LI70 58 aa2.44□□□□□ -2.02
NEDD9-204ENST00000448183 KRTAP9-6A0A140TA67 174 aa2.42□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms