RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 INE1O15225 51 aa7.3□□□□□ -1.24
PTPRF-209ENST00000438120 DNAH5Q8TE73 4624 aa7.17□□□□□ -1.26
PTPRF-209ENST00000438120 DNAH9Q9NYC9 4486 aa7.15□□□□□ -1.27
PTPRF-209ENST00000438120 KRTAP8-1Q8IUC2 63 aa7.13□□□□□ -1.27
PTPRF-209ENST00000438120 KRTAP23-1A1A580 65 aa7.08□□□□□ -1.28
PTPRF-209ENST00000438120 KRTAP10-5P60370 271 aa7.08□□□□□ -1.28
PTPRF-209ENST00000438120 KRTAP4-1Q9BYQ7 146 aa7.06□□□□□ -1.28
PTPRF-209ENST00000438120 DNAH1Q9P2D7 4330 aa7.03□□□□□ -1.28
PTPRF-209ENST00000438120 ZNF469Q96JG9 3925 aaPredicted RBP6.98□□□□□ -1.29
PTPRF-209ENST00000438120 PLECQ15149 4684 aaKnown RBP6.97□□□□□ -1.29
PTPRF-209ENST00000438120 DNAH10Q8IVF4 4471 aa6.96□□□□□ -1.29
PTPRF-209ENST00000438120 MT1HP80294 61 aa6.94□□□□□ -1.3
PTPRF-209ENST00000438120 AKAP9Q99996 3911 aa6.92□□□□□ -1.3
PTPRF-209ENST00000438120 DNAH11Q96DT5 4516 aa6.92□□□□□ -1.3
PTPRF-209ENST00000438120 MT2AP02795 61 aa6.83□□□□□ -1.32
PTPRF-209ENST00000438120 DNHD1Q96M86 4753 aa6.81□□□□□ -1.32
PTPRF-209ENST00000438120 FAT1Q14517 4588 aa6.79□□□□□ -1.32
PTPRF-209ENST00000438120 DNAH2Q9P225 4427 aa6.79□□□□□ -1.32
PTPRF-209ENST00000438120 DYNC1H1Q14204 4646 aaKnown RBP6.74□□□□□ -1.33
PTPRF-209ENST00000438120 DNAH17Q9UFH2 4485 aa6.73□□□□□ -1.33
PTPRF-209ENST00000438120 MT1FP04733 61 aa6.72□□□□□ -1.33
PTPRF-209ENST00000438120 LRP1BQ9NZR2 4599 aa6.71□□□□□ -1.33
PTPRF-209ENST00000438120 VPS13DQ5THJ4 4388 aa6.7□□□□□ -1.34
PTPRF-209ENST00000438120 SPRR2GQ9BYE4 73 aa6.68□□□□□ -1.34
PTPRF-209ENST00000438120 RYR1P21817 5038 aa6.68□□□□□ -1.34
PTPRF-209ENST00000438120 SPRR2FQ96RM1 72 aa6.67□□□□□ -1.34
PTPRF-209ENST00000438120 KRTAP19-5Q3LI72 72 aa6.64□□□□□ -1.35
PTPRF-209ENST00000438120 DNAH8Q96JB1 4490 aa6.63□□□□□ -1.35
PTPRF-209ENST00000438120 STARD9Q9P2P6 4700 aa6.61□□□□□ -1.35
PTPRF-209ENST00000438120 FAT2Q9NYQ8 4349 aa6.59□□□□□ -1.35
PTPRF-209ENST00000438120 SACSQ9NZJ4 4579 aa6.57□□□□□ -1.36
PTPRF-209ENST00000438120 KRTAP10-7P60409 375 aaPredicted RBP6.55□□□□□ -1.36
PTPRF-209ENST00000438120 DNAH3Q8TD57 4116 aa6.52□□□□□ -1.37
PTPRF-209ENST00000438120 ANK2Q01484 3957 aa6.51□□□□□ -1.37
PTPRF-209ENST00000438120 DYNC2H1Q8NCM8 4307 aaKnown RBP6.48□□□□□ -1.37
PTPRF-209ENST00000438120 VPS13BQ7Z7G8 4022 aa6.47□□□□□ -1.37
PTPRF-209ENST00000438120 APOBP04114 4563 aaKnown RBP6.47□□□□□ -1.37
PTPRF-209ENST00000438120 LCE3CQ5T5A8 94 aa6.46□□□□□ -1.37
PTPRF-209ENST00000438120 KMT2AQ03164 3969 aa6.41□□□□□ -1.38
PTPRF-209ENST00000438120 PRKDCP78527 4128 aaKnown RBP6.37□□□□□ -1.39
PTPRF-209ENST00000438120 LYSTQ99698 3801 aa6.35□□□□□ -1.39
PTPRF-209ENST00000438120 RYR3Q15413 4870 aa6.32□□□□□ -1.4
PTPRF-209ENST00000438120 KRTAP17-1Q9BYP8 105 aa6.31□□□□□ -1.4
PTPRF-209ENST00000438120 MYCBP2O75592 4640 aa6.27□□□□□ -1.41
PTPRF-209ENST00000438120 SPRR2EP22531 72 aa6.24□□□□□ -1.41
PTPRF-209ENST00000438120 SPRR2BP35325 72 aa6.24□□□□□ -1.41
PTPRF-209ENST00000438120 SPRR2AP35326 72 aa6.24□□□□□ -1.41
PTPRF-209ENST00000438120 KRTAP19-1Q8IUB9 90 aa6.23□□□□□ -1.41
PTPRF-209ENST00000438120 FRAS1Q86XX4 4008 aa6.21□□□□□ -1.42
PTPRF-209ENST00000438120 LCE3BQ5TA77 95 aa6.17□□□□□ -1.42
PTPRF-209ENST00000438120 FAT3Q8TDW7 4589 aa6.16□□□□□ -1.42
PTPRF-209ENST00000438120 KRTAP19-8Q3LI54 63 aa6.15□□□□□ -1.42
PTPRF-209ENST00000438120 MT1XP80297 61 aa6.12□□□□□ -1.43
PTPRF-209ENST00000438120 DNAH7Q8WXX0 4024 aa6.11□□□□□ -1.43
PTPRF-209ENST00000438120 KIAA1109Q2LD37 5005 aa6.11□□□□□ -1.43
PTPRF-209ENST00000438120 MT1GP13640 62 aa6.11□□□□□ -1.43
PTPRF-209ENST00000438120 LRP1Q07954 4544 aaKnown RBP6.09□□□□□ -1.43
PTPRF-209ENST00000438120 KRTAP4-8A0A0G2JLE6 195 aa6.06□□□□□ -1.44
PTPRF-209ENST00000438120 KRTAP4-8Q9BYQ9 185 aa6.06□□□□□ -1.44
PTPRF-209ENST00000438120 DNAH6Q9C0G6 4158 aa6.05□□□□□ -1.44
PTPRF-209ENST00000438120 MT1BP07438 61 aa6.04□□□□□ -1.44
PTPRF-209ENST00000438120 SPRR2DP22532 72 aa6.02□□□□□ -1.45
PTPRF-209ENST00000438120 KRTAP9-8Q9BYQ0 159 aa6□□□□□ -1.45
PTPRF-209ENST00000438120 KRTAP19-4Q3LI73 84 aa6□□□□□ -1.45
PTPRF-209ENST00000438120 CMYA5Q8N3K9 4069 aa5.99□□□□□ -1.45
PTPRF-209ENST00000438120 LCE2BO14633 110 aa5.96□□□□□ -1.46
PTPRF-209ENST00000438120 RYR2Q92736 4967 aa5.96□□□□□ -1.46
PTPRF-209ENST00000438120 KRTAP12-4P60329 112 aa5.91□□□□□ -1.46
PTPRF-209ENST00000438120 HECTD4Q9Y4D8 3996 aa5.91□□□□□ -1.46
PTPRF-209ENST00000438120 KRTAP9-3Q9BYQ3 159 aa5.86□□□□□ -1.47
PTPRF-209ENST00000438120 LCE2CQ5TA81 110 aa5.85□□□□□ -1.47
PTPRF-209ENST00000438120 HERC2O95714 4834 aa5.83□□□□□ -1.48
PTPRF-209ENST00000438120 HSPG2P98160 4391 aa5.81□□□□□ -1.48
PTPRF-209ENST00000438120 LRP2P98164 4655 aa5.81□□□□□ -1.48
PTPRF-209ENST00000438120 PKD1P98161 4303 aa5.79□□□□□ -1.48
PTPRF-209ENST00000438120 LPAP08519 4548 aa5.79□□□□□ -1.48
PTPRF-209ENST00000438120 HERC1Q15751 4861 aa5.77□□□□□ -1.49
PTPRF-209ENST00000438120 SPRR5A0A1B0GTR4 108 aa5.76□□□□□ -1.49
PTPRF-209ENST00000438120 PCLOQ9Y6V0 5065 aa5.76□□□□□ -1.49
PTPRF-209ENST00000438120 HYDINQ4G0P3 5121 aa5.75□□□□□ -1.49
PTPRF-209ENST00000438120 KRTAP4-7Q9BYR0 210 aa5.74□□□□□ -1.49
PTPRF-209ENST00000438120 LCE3DQ9BYE3 92 aa5.7□□□□□ -1.5
PTPRF-209ENST00000438120 BIRC6Q9NR09 4857 aa5.68□□□□□ -1.5
PTPRF-209ENST00000438120 PKHD1L1Q86WI1 4243 aa5.65□□□□□ -1.51
PTPRF-209ENST00000438120 KRTAP19-3Q7Z4W3 81 aa5.62□□□□□ -1.51
PTPRF-209ENST00000438120 PKHD1P08F94 4074 aa5.62□□□□□ -1.51
PTPRF-209ENST00000438120 LCE3EQ5T5B0 92 aa5.58□□□□□ -1.52
PTPRF-209ENST00000438120 MT1LQ93083 61 aa5.56□□□□□ -1.52
PTPRF-209ENST00000438120 LCE2DQ5TA82 110 aaPredicted RBP5.52□□□□□ -1.53
PTPRF-209ENST00000438120 MT1EP04732 61 aa5.51□□□□□ -1.53
PTPRF-209ENST00000438120 KMT2CQ8NEZ4 4911 aaKnown RBP5.5□□□□□ -1.53
PTPRF-209ENST00000438120 KRTAP19-2Q3LHN2 52 aa5.49□□□□□ -1.53
PTPRF-209ENST00000438120 EPPK1P58107 5090 aaKnown RBP5.47□□□□□ -1.53
PTPRF-209ENST00000438120 MT4P47944 62 aa5.44□□□□□ -1.54
PTPRF-209ENST00000438120 LOC100996750A0A140TA64 210 aa5.42□□□□□ -1.54
PTPRF-209ENST00000438120 TNXBP22105 4242 aa5.42□□□□□ -1.54
PTPRF-209ENST00000438120 KRTAP4-3Q9BYR4 195 aa5.37□□□□□ -1.55
PTPRF-209ENST00000438120 MT1MQ8N339 61 aa5.37□□□□□ -1.55
PTPRF-209ENST00000438120 FLGP20930 4061 aaPredicted RBP5.32□□□□□ -1.56
PTPRF-209ENST00000438120 FSIP2Q5CZC0 6907 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms