RNA–Protein interactions for RNA: ENST00000398559.6

TMF1-201, Transcript of TATA element modulatory factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMF1, Length 6,849 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMF1-201ENST00000398559 VPS13CQ709C8 3753 aa4.88□□□□□ -1.63
TMF1-201ENST00000398559 BSNQ9UPA5 3926 aa4.86□□□□□ -1.63
TMF1-201ENST00000398559 KRTAP8-1Q8IUC2 63 aa4.79□□□□□ -1.64
TMF1-201ENST00000398559 CSMD3Q7Z407 3707 aa4.79□□□□□ -1.64
TMF1-201ENST00000398559 AKAP9Q99996 3911 aa4.72□□□□□ -1.65
TMF1-201ENST00000398559 KRTAP4-1Q9BYQ7 146 aa4.65□□□□□ -1.66
TMF1-201ENST00000398559 DNAH1Q9P2D7 4330 aa4.65□□□□□ -1.66
TMF1-201ENST00000398559 DNAH9Q9NYC9 4486 aa4.65□□□□□ -1.66
TMF1-201ENST00000398559 DNAH10Q8IVF4 4471 aa4.61□□□□□ -1.67
TMF1-201ENST00000398559 DNAH2Q9P225 4427 aa4.6□□□□□ -1.67
TMF1-201ENST00000398559 MT1HP80294 61 aa4.6□□□□□ -1.67
TMF1-201ENST00000398559 DNAH5Q8TE73 4624 aa4.56□□□□□ -1.68
TMF1-201ENST00000398559 SPRR2GQ9BYE4 73 aa4.55□□□□□ -1.68
TMF1-201ENST00000398559 MT2AP02795 61 aa4.54□□□□□ -1.68
TMF1-201ENST00000398559 KRTAP19-5Q3LI72 72 aa4.53□□□□□ -1.68
TMF1-201ENST00000398559 DNAH11Q96DT5 4516 aa4.53□□□□□ -1.68
TMF1-201ENST00000398559 LCE3CQ5T5A8 94 aa4.49□□□□□ -1.69
TMF1-201ENST00000398559 DNAH8Q96JB1 4490 aa4.49□□□□□ -1.69
TMF1-201ENST00000398559 DNAH3Q8TD57 4116 aa4.49□□□□□ -1.69
TMF1-201ENST00000398559 DNAH17Q9UFH2 4485 aa4.47□□□□□ -1.69
TMF1-201ENST00000398559 PLECQ15149 4684 aaKnown RBP4.47□□□□□ -1.69
TMF1-201ENST00000398559 ZNF469Q96JG9 3925 aaPredicted RBP4.46□□□□□ -1.7
TMF1-201ENST00000398559 MT1FP04733 61 aa4.45□□□□□ -1.7
TMF1-201ENST00000398559 KRTAP10-7P60409 375 aaPredicted RBP4.44□□□□□ -1.7
TMF1-201ENST00000398559 SPRR2FQ96RM1 72 aa4.42□□□□□ -1.7
TMF1-201ENST00000398559 VPS13DQ5THJ4 4388 aa4.41□□□□□ -1.7
TMF1-201ENST00000398559 ANK2Q01484 3957 aa4.36□□□□□ -1.71
TMF1-201ENST00000398559 FAT2Q9NYQ8 4349 aa4.36□□□□□ -1.71
TMF1-201ENST00000398559 FAT1Q14517 4588 aa4.35□□□□□ -1.71
TMF1-201ENST00000398559 DYNC2H1Q8NCM8 4307 aaKnown RBP4.33□□□□□ -1.72
TMF1-201ENST00000398559 LRP1BQ9NZR2 4599 aa4.32□□□□□ -1.72
TMF1-201ENST00000398559 SACSQ9NZJ4 4579 aa4.3□□□□□ -1.72
TMF1-201ENST00000398559 STARD9Q9P2P6 4700 aa4.26□□□□□ -1.73
TMF1-201ENST00000398559 DYNC1H1Q14204 4646 aaKnown RBP4.26□□□□□ -1.73
TMF1-201ENST00000398559 VPS13BQ7Z7G8 4022 aa4.25□□□□□ -1.73
TMF1-201ENST00000398559 KRTAP19-4Q3LI73 84 aa4.25□□□□□ -1.73
TMF1-201ENST00000398559 FRAS1Q86XX4 4008 aa4.24□□□□□ -1.73
TMF1-201ENST00000398559 LCE3BQ5TA77 95 aa4.22□□□□□ -1.73
TMF1-201ENST00000398559 CMYA5Q8N3K9 4069 aa4.21□□□□□ -1.73
TMF1-201ENST00000398559 KMT2AQ03164 3969 aa4.2□□□□□ -1.74
TMF1-201ENST00000398559 DNAH7Q8WXX0 4024 aa4.2□□□□□ -1.74
TMF1-201ENST00000398559 PRKDCP78527 4128 aaKnown RBP4.19□□□□□ -1.74
TMF1-201ENST00000398559 DNAH6Q9C0G6 4158 aa4.18□□□□□ -1.74
TMF1-201ENST00000398559 KRTAP19-8Q3LI54 63 aa4.16□□□□□ -1.74
TMF1-201ENST00000398559 KRTAP19-1Q8IUB9 90 aa4.16□□□□□ -1.74
TMF1-201ENST00000398559 APOBP04114 4563 aaKnown RBP4.16□□□□□ -1.74
TMF1-201ENST00000398559 KRTAP12-4P60329 112 aa4.15□□□□□ -1.75
TMF1-201ENST00000398559 MT1GP13640 62 aa4.14□□□□□ -1.75
TMF1-201ENST00000398559 MT1XP80297 61 aa4.13□□□□□ -1.75
TMF1-201ENST00000398559 SPRR2EP22531 72 aa4.13□□□□□ -1.75
TMF1-201ENST00000398559 SPRR2BP35325 72 aa4.13□□□□□ -1.75
TMF1-201ENST00000398559 SPRR2AP35326 72 aa4.13□□□□□ -1.75
TMF1-201ENST00000398559 LYSTQ99698 3801 aa4.05□□□□□ -1.76
TMF1-201ENST00000398559 RYR1P21817 5038 aa4.05□□□□□ -1.76
TMF1-201ENST00000398559 SPRR5A0A1B0GTR4 108 aa4.04□□□□□ -1.76
TMF1-201ENST00000398559 MT1BP07438 61 aa4.03□□□□□ -1.76
TMF1-201ENST00000398559 FAT3Q8TDW7 4589 aa4.02□□□□□ -1.77
TMF1-201ENST00000398559 KRTAP4-8A0A0G2JLE6 195 aa4.01□□□□□ -1.77
TMF1-201ENST00000398559 KRTAP4-8Q9BYQ9 185 aa4.01□□□□□ -1.77
TMF1-201ENST00000398559 HECTD4Q9Y4D8 3996 aa4□□□□□ -1.77
TMF1-201ENST00000398559 LRP1Q07954 4544 aaKnown RBP4□□□□□ -1.77
TMF1-201ENST00000398559 SPRR2DP22532 72 aa3.99□□□□□ -1.77
TMF1-201ENST00000398559 DNHD1Q96M86 4753 aa3.99□□□□□ -1.77
TMF1-201ENST00000398559 KRTAP17-1Q9BYP8 105 aa3.98□□□□□ -1.77
TMF1-201ENST00000398559 LCE2BO14633 110 aa3.98□□□□□ -1.77
TMF1-201ENST00000398559 LCE3DQ9BYE3 92 aa3.97□□□□□ -1.77
TMF1-201ENST00000398559 KRTAP9-8Q9BYQ0 159 aa3.96□□□□□ -1.78
TMF1-201ENST00000398559 MYCBP2O75592 4640 aa3.91□□□□□ -1.78
TMF1-201ENST00000398559 LCE3EQ5T5B0 92 aa3.9□□□□□ -1.78
TMF1-201ENST00000398559 RYR3Q15413 4870 aa3.88□□□□□ -1.79
TMF1-201ENST00000398559 KRTAP9-3Q9BYQ3 159 aa3.87□□□□□ -1.79
TMF1-201ENST00000398559 KRTAP4-7Q9BYR0 210 aa3.84□□□□□ -1.8
TMF1-201ENST00000398559 LCE2CQ5TA81 110 aa3.82□□□□□ -1.8
TMF1-201ENST00000398559 KRTAP19-3Q7Z4W3 81 aa3.78□□□□□ -1.8
TMF1-201ENST00000398559 MT1LQ93083 61 aa3.78□□□□□ -1.81
TMF1-201ENST00000398559 PKD1P98161 4303 aa3.77□□□□□ -1.81
TMF1-201ENST00000398559 HSPG2P98160 4391 aa3.77□□□□□ -1.81
TMF1-201ENST00000398559 LPAP08519 4548 aa3.72□□□□□ -1.81
TMF1-201ENST00000398559 MT1EP04732 61 aa3.72□□□□□ -1.81
TMF1-201ENST00000398559 PKHD1L1Q86WI1 4243 aa3.72□□□□□ -1.81
TMF1-201ENST00000398559 HERC1Q15751 4861 aa3.69□□□□□ -1.82
TMF1-201ENST00000398559 PRM1P04553 51 aa3.69□□□□□ -1.82
TMF1-201ENST00000398559 RYR2Q92736 4967 aa3.68□□□□□ -1.82
TMF1-201ENST00000398559 LCE2DQ5TA82 110 aaPredicted RBP3.65□□□□□ -1.83
TMF1-201ENST00000398559 LOC100996750A0A140TA64 210 aa3.64□□□□□ -1.83
TMF1-201ENST00000398559 LRP2P98164 4655 aa3.63□□□□□ -1.83
TMF1-201ENST00000398559 TNXBP22105 4242 aa3.62□□□□□ -1.83
TMF1-201ENST00000398559 MT1MQ8N339 61 aa3.62□□□□□ -1.83
TMF1-201ENST00000398559 MT3P25713 68 aa3.6□□□□□ -1.83
TMF1-201ENST00000398559 KRTAP19-2Q3LHN2 52 aa3.58□□□□□ -1.84
TMF1-201ENST00000398559 PKHD1P08F94 4074 aa3.58□□□□□ -1.84
TMF1-201ENST00000398559 MT4P47944 62 aa3.57□□□□□ -1.84
TMF1-201ENST00000398559 KRTAP4-3Q9BYR4 195 aa3.57□□□□□ -1.84
TMF1-201ENST00000398559 FLGP20930 4061 aaPredicted RBP3.55□□□□□ -1.84
TMF1-201ENST00000398559 KIAA1109Q2LD37 5005 aa3.54□□□□□ -1.84
TMF1-201ENST00000398559 HERC2O95714 4834 aa3.53□□□□□ -1.84
TMF1-201ENST00000398559 HYDINQ4G0P3 5121 aa3.51□□□□□ -1.85
TMF1-201ENST00000398559 LCE1BQ5T7P3 118 aa3.5□□□□□ -1.85
TMF1-201ENST00000398559 LCE1DQ5T752 114 aa3.47□□□□□ -1.85
TMF1-201ENST00000398559 KMT2CQ8NEZ4 4911 aaKnown RBP3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 120.1 ms