RNA–Protein interactions for RNA: ENST00000380518.7

COL2A1-202, Transcript of collagen type II alpha 1 chain, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene COL2A1, Length 5,071 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1-202ENST00000380518 ZNF469Q96JG9 3925 aaPredicted RBP6.69□□□□□ -1.34
COL2A1-202ENST00000380518 DNAH5Q8TE73 4624 aa6.56□□□□□ -1.36
COL2A1-202ENST00000380518 ALMS1Q8TCU4 4167 aa6.55□□□□□ -1.36
COL2A1-202ENST00000380518 AKAP9Q99996 3911 aa6.55□□□□□ -1.36
COL2A1-202ENST00000380518 CSMD3Q7Z407 3707 aa6.54□□□□□ -1.36
COL2A1-202ENST00000380518 KRTAP8-1Q8IUC2 63 aa6.52□□□□□ -1.36
COL2A1-202ENST00000380518 PLECQ15149 4684 aaKnown RBP6.48□□□□□ -1.37
COL2A1-202ENST00000380518 KRTAP4-1Q9BYQ7 146 aa6.47□□□□□ -1.37
COL2A1-202ENST00000380518 KRTAP10-5P60370 271 aa6.46□□□□□ -1.38
COL2A1-202ENST00000380518 DNAH10Q8IVF4 4471 aa6.42□□□□□ -1.38
COL2A1-202ENST00000380518 DNAH9Q9NYC9 4486 aa6.42□□□□□ -1.38
COL2A1-202ENST00000380518 MT1HP80294 61 aa6.39□□□□□ -1.39
COL2A1-202ENST00000380518 SPRR2GQ9BYE4 73 aa6.36□□□□□ -1.39
COL2A1-202ENST00000380518 FAT1Q14517 4588 aa6.36□□□□□ -1.39
COL2A1-202ENST00000380518 MT2AP02795 61 aa6.35□□□□□ -1.39
COL2A1-202ENST00000380518 DNAH11Q96DT5 4516 aa6.32□□□□□ -1.4
COL2A1-202ENST00000380518 DNAH1Q9P2D7 4330 aa6.31□□□□□ -1.4
COL2A1-202ENST00000380518 DNAH2Q9P225 4427 aa6.24□□□□□ -1.41
COL2A1-202ENST00000380518 DNHD1Q96M86 4753 aa6.2□□□□□ -1.42
COL2A1-202ENST00000380518 MT1FP04733 61 aa6.2□□□□□ -1.42
COL2A1-202ENST00000380518 DYNC1H1Q14204 4646 aaKnown RBP6.18□□□□□ -1.42
COL2A1-202ENST00000380518 DNAH17Q9UFH2 4485 aa6.17□□□□□ -1.42
COL2A1-202ENST00000380518 VPS13DQ5THJ4 4388 aa6.13□□□□□ -1.43
COL2A1-202ENST00000380518 DNAH8Q96JB1 4490 aa6.13□□□□□ -1.43
COL2A1-202ENST00000380518 RYR1P21817 5038 aa6.13□□□□□ -1.43
COL2A1-202ENST00000380518 KRTAP19-5Q3LI72 72 aa6.11□□□□□ -1.43
COL2A1-202ENST00000380518 LRP1BQ9NZR2 4599 aa6.08□□□□□ -1.44
COL2A1-202ENST00000380518 SACSQ9NZJ4 4579 aa6.07□□□□□ -1.44
COL2A1-202ENST00000380518 STARD9Q9P2P6 4700 aa6.06□□□□□ -1.44
COL2A1-202ENST00000380518 LCE3CQ5T5A8 94 aa6.06□□□□□ -1.44
COL2A1-202ENST00000380518 KRTAP10-7P60409 375 aaPredicted RBP6.03□□□□□ -1.44
COL2A1-202ENST00000380518 KRTAP19-4Q3LI73 84 aa6.03□□□□□ -1.44
COL2A1-202ENST00000380518 SPRR2FQ96RM1 72 aa6.03□□□□□ -1.44
COL2A1-202ENST00000380518 PRKDCP78527 4128 aaKnown RBP5.95□□□□□ -1.46
COL2A1-202ENST00000380518 FAT2Q9NYQ8 4349 aa5.92□□□□□ -1.46
COL2A1-202ENST00000380518 APOBP04114 4563 aaKnown RBP5.91□□□□□ -1.46
COL2A1-202ENST00000380518 ANK2Q01484 3957 aa5.91□□□□□ -1.46
COL2A1-202ENST00000380518 DYNC2H1Q8NCM8 4307 aaKnown RBP5.91□□□□□ -1.46
COL2A1-202ENST00000380518 DNAH3Q8TD57 4116 aa5.9□□□□□ -1.46
COL2A1-202ENST00000380518 KRTAP19-8Q3LI54 63 aa5.9□□□□□ -1.46
COL2A1-202ENST00000380518 KRTAP19-1Q8IUB9 90 aa5.89□□□□□ -1.47
COL2A1-202ENST00000380518 KMT2AQ03164 3969 aa5.84□□□□□ -1.47
COL2A1-202ENST00000380518 RYR3Q15413 4870 aa5.76□□□□□ -1.49
COL2A1-202ENST00000380518 CMYA5Q8N3K9 4069 aa5.76□□□□□ -1.49
COL2A1-202ENST00000380518 KIAA1109Q2LD37 5005 aa5.76□□□□□ -1.49
COL2A1-202ENST00000380518 MYCBP2O75592 4640 aa5.74□□□□□ -1.49
COL2A1-202ENST00000380518 MT1XP80297 61 aa5.73□□□□□ -1.49
COL2A1-202ENST00000380518 LRP1Q07954 4544 aaKnown RBP5.73□□□□□ -1.49
COL2A1-202ENST00000380518 VPS13BQ7Z7G8 4022 aa5.71□□□□□ -1.5
COL2A1-202ENST00000380518 FAT3Q8TDW7 4589 aa5.7□□□□□ -1.5
COL2A1-202ENST00000380518 LYSTQ99698 3801 aa5.7□□□□□ -1.5
COL2A1-202ENST00000380518 KRTAP17-1Q9BYP8 105 aa5.69□□□□□ -1.5
COL2A1-202ENST00000380518 MT1BP07438 61 aa5.67□□□□□ -1.5
COL2A1-202ENST00000380518 FRAS1Q86XX4 4008 aa5.61□□□□□ -1.51
COL2A1-202ENST00000380518 KRTAP9-8Q9BYQ0 159 aa5.61□□□□□ -1.51
COL2A1-202ENST00000380518 SPRR2EP22531 72 aa5.6□□□□□ -1.51
COL2A1-202ENST00000380518 SPRR2BP35325 72 aa5.6□□□□□ -1.51
COL2A1-202ENST00000380518 SPRR2AP35326 72 aa5.6□□□□□ -1.51
COL2A1-202ENST00000380518 RYR2Q92736 4967 aa5.59□□□□□ -1.51
COL2A1-202ENST00000380518 LCE3BQ5TA77 95 aa5.58□□□□□ -1.52
COL2A1-202ENST00000380518 DNAH6Q9C0G6 4158 aa5.57□□□□□ -1.52
COL2A1-202ENST00000380518 HECTD4Q9Y4D8 3996 aa5.55□□□□□ -1.52
COL2A1-202ENST00000380518 SPRR5A0A1B0GTR4 108 aa5.55□□□□□ -1.52
COL2A1-202ENST00000380518 MT1GP13640 62 aa5.54□□□□□ -1.52
COL2A1-202ENST00000380518 DNAH7Q8WXX0 4024 aa5.54□□□□□ -1.52
COL2A1-202ENST00000380518 KRTAP12-4P60329 112 aa5.53□□□□□ -1.52
COL2A1-202ENST00000380518 KRTAP4-8A0A0G2JLE6 195 aa5.49□□□□□ -1.53
COL2A1-202ENST00000380518 KRTAP4-8Q9BYQ9 185 aa5.49□□□□□ -1.53
COL2A1-202ENST00000380518 LCE2CQ5TA81 110 aa5.48□□□□□ -1.53
COL2A1-202ENST00000380518 KRTAP9-3Q9BYQ3 159 aa5.48□□□□□ -1.53
COL2A1-202ENST00000380518 HYDINQ4G0P3 5121 aa5.44□□□□□ -1.54
COL2A1-202ENST00000380518 LCE2BO14633 110 aa5.44□□□□□ -1.54
COL2A1-202ENST00000380518 HERC1Q15751 4861 aa5.44□□□□□ -1.54
COL2A1-202ENST00000380518 SPRR2DP22532 72 aa5.42□□□□□ -1.54
COL2A1-202ENST00000380518 HERC2O95714 4834 aa5.4□□□□□ -1.55
COL2A1-202ENST00000380518 PKD1P98161 4303 aa5.38□□□□□ -1.55
COL2A1-202ENST00000380518 HSPG2P98160 4391 aa5.35□□□□□ -1.55
COL2A1-202ENST00000380518 LCE3DQ9BYE3 92 aa5.34□□□□□ -1.55
COL2A1-202ENST00000380518 PCLOQ9Y6V0 5065 aa5.34□□□□□ -1.55
COL2A1-202ENST00000380518 LRP2P98164 4655 aa5.33□□□□□ -1.56
COL2A1-202ENST00000380518 PKHD1P08F94 4074 aa5.33□□□□□ -1.56
COL2A1-202ENST00000380518 LCE3EQ5T5B0 92 aa5.27□□□□□ -1.57
COL2A1-202ENST00000380518 KRTAP19-3Q7Z4W3 81 aa5.27□□□□□ -1.57
COL2A1-202ENST00000380518 MT1LQ93083 61 aa5.23□□□□□ -1.57
COL2A1-202ENST00000380518 BIRC6Q9NR09 4857 aa5.23□□□□□ -1.57
COL2A1-202ENST00000380518 KRTAP19-2Q3LHN2 52 aa5.2□□□□□ -1.58
COL2A1-202ENST00000380518 MT1EP04732 61 aa5.18□□□□□ -1.58
COL2A1-202ENST00000380518 KRTAP4-7Q9BYR0 210 aa5.18□□□□□ -1.58
COL2A1-202ENST00000380518 EPPK1P58107 5090 aaKnown RBP5.16□□□□□ -1.58
COL2A1-202ENST00000380518 SYNE1Q8NF91 8797 aaKnown RBP5.15□□□□□ -1.58
COL2A1-202ENST00000380518 KMT2CQ8NEZ4 4911 aaKnown RBP5.11□□□□□ -1.59
COL2A1-202ENST00000380518 LPAP08519 4548 aa5.07□□□□□ -1.6
COL2A1-202ENST00000380518 PKHD1L1Q86WI1 4243 aa5.06□□□□□ -1.6
COL2A1-202ENST00000380518 MUC17Q685J3 4493 aa5.06□□□□□ -1.6
COL2A1-202ENST00000380518 MT1MQ8N339 61 aa5.02□□□□□ -1.61
COL2A1-202ENST00000380518 TNXBP22105 4242 aa4.99□□□□□ -1.61
COL2A1-202ENST00000380518 LCE2DQ5TA82 110 aaPredicted RBP4.98□□□□□ -1.61
COL2A1-202ENST00000380518 MT3P25713 68 aa4.96□□□□□ -1.61
COL2A1-202ENST00000380518 ABCA13Q86UQ4 5058 aa4.96□□□□□ -1.61
COL2A1-202ENST00000380518 KRTAP19-6Q3LI70 58 aa4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms