RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 DNAH1Q9P2D7 4330 aa4.6□□□□□ -1.67
CHD3-201ENST00000330494 DNAH10Q8IVF4 4471 aa4.6□□□□□ -1.67
CHD3-201ENST00000330494 LYSTQ99698 3801 aa4.57□□□□□ -1.68
CHD3-201ENST00000330494 KRTAP3-2Q9BYR7 98 aa4.56□□□□□ -1.68
CHD3-201ENST00000330494 ANK2Q01484 3957 aa4.5□□□□□ -1.69
CHD3-201ENST00000330494 CMYA5Q8N3K9 4069 aa4.5□□□□□ -1.69
CHD3-201ENST00000330494 KMT2AQ03164 3969 aa4.5□□□□□ -1.69
CHD3-201ENST00000330494 KRTAP10-12P60413 245 aa4.49□□□□□ -1.69
CHD3-201ENST00000330494 PLECQ15149 4684 aaKnown RBP4.48□□□□□ -1.69
CHD3-201ENST00000330494 LORP23490 312 aaPredicted RBP4.47□□□□□ -1.69
CHD3-201ENST00000330494 DNAH3Q8TD57 4116 aa4.46□□□□□ -1.69
CHD3-201ENST00000330494 DNAH2Q9P225 4427 aa4.45□□□□□ -1.7
CHD3-201ENST00000330494 DNAH11Q96DT5 4516 aa4.4□□□□□ -1.7
CHD3-201ENST00000330494 DNAH5Q8TE73 4624 aa4.38□□□□□ -1.71
CHD3-201ENST00000330494 LCE3AQ5TA76 89 aa4.38□□□□□ -1.71
CHD3-201ENST00000330494 PRKDCP78527 4128 aaKnown RBP4.38□□□□□ -1.71
CHD3-201ENST00000330494 STARD9Q9P2P6 4700 aa4.38□□□□□ -1.71
CHD3-201ENST00000330494 VPS13DQ5THJ4 4388 aa4.36□□□□□ -1.71
CHD3-201ENST00000330494 VPS13BQ7Z7G8 4022 aa4.35□□□□□ -1.71
CHD3-201ENST00000330494 KRTAP12-3P60328 96 aa4.34□□□□□ -1.72
CHD3-201ENST00000330494 FAT2Q9NYQ8 4349 aa4.33□□□□□ -1.72
CHD3-201ENST00000330494 KRTAP4-1Q9BYQ7 146 aa4.33□□□□□ -1.72
CHD3-201ENST00000330494 DNAH17Q9UFH2 4485 aa4.31□□□□□ -1.72
CHD3-201ENST00000330494 DNAH7Q8WXX0 4024 aa4.29□□□□□ -1.72
CHD3-201ENST00000330494 LRP1BQ9NZR2 4599 aa4.28□□□□□ -1.72
CHD3-201ENST00000330494 DYNC2H1Q8NCM8 4307 aaKnown RBP4.26□□□□□ -1.73
CHD3-201ENST00000330494 DNAH8Q96JB1 4490 aa4.25□□□□□ -1.73
CHD3-201ENST00000330494 FAT1Q14517 4588 aa4.23□□□□□ -1.73
CHD3-201ENST00000330494 KRTAP8-1Q8IUC2 63 aa4.21□□□□□ -1.74
CHD3-201ENST00000330494 DNAH6Q9C0G6 4158 aa4.21□□□□□ -1.74
CHD3-201ENST00000330494 MT1HP80294 61 aa4.21□□□□□ -1.74
CHD3-201ENST00000330494 DNHD1Q96M86 4753 aa4.2□□□□□ -1.74
CHD3-201ENST00000330494 KRTAP10-5P60370 271 aa4.19□□□□□ -1.74
CHD3-201ENST00000330494 HECTD4Q9Y4D8 3996 aa4.15□□□□□ -1.74
CHD3-201ENST00000330494 DYNC1H1Q14204 4646 aaKnown RBP4.14□□□□□ -1.75
CHD3-201ENST00000330494 KRTAP23-1A1A580 65 aa4.13□□□□□ -1.75
CHD3-201ENST00000330494 SACSQ9NZJ4 4579 aa4.12□□□□□ -1.75
CHD3-201ENST00000330494 MT2AP02795 61 aa4.1□□□□□ -1.75
CHD3-201ENST00000330494 KRTAP10-7P60409 375 aaPredicted RBP4.06□□□□□ -1.76
CHD3-201ENST00000330494 MT1FP04733 61 aa4.05□□□□□ -1.76
CHD3-201ENST00000330494 KRTAP17-1Q9BYP8 105 aa4.04□□□□□ -1.76
CHD3-201ENST00000330494 RYR1P21817 5038 aa3.99□□□□□ -1.77
CHD3-201ENST00000330494 SPRR2GQ9BYE4 73 aa3.99□□□□□ -1.77
CHD3-201ENST00000330494 APOBP04114 4563 aaKnown RBP3.98□□□□□ -1.77
CHD3-201ENST00000330494 FAT3Q8TDW7 4589 aa3.98□□□□□ -1.77
CHD3-201ENST00000330494 SPRR2FQ96RM1 72 aa3.97□□□□□ -1.77
CHD3-201ENST00000330494 PKHD1P08F94 4074 aa3.96□□□□□ -1.78
CHD3-201ENST00000330494 KRTAP19-5Q3LI72 72 aa3.95□□□□□ -1.78
CHD3-201ENST00000330494 MYCBP2O75592 4640 aa3.95□□□□□ -1.78
CHD3-201ENST00000330494 LRP1Q07954 4544 aaKnown RBP3.95□□□□□ -1.78
CHD3-201ENST00000330494 HSPG2P98160 4391 aa3.89□□□□□ -1.79
CHD3-201ENST00000330494 LPAP08519 4548 aa3.89□□□□□ -1.79
CHD3-201ENST00000330494 LCE3CQ5T5A8 94 aa3.8□□□□□ -1.8
CHD3-201ENST00000330494 SPRR5A0A1B0GTR4 108 aa3.79□□□□□ -1.8
CHD3-201ENST00000330494 HYDINQ4G0P3 5121 aa3.78□□□□□ -1.8
CHD3-201ENST00000330494 RYR3Q15413 4870 aa3.77□□□□□ -1.81
CHD3-201ENST00000330494 KRTAP19-1Q8IUB9 90 aa3.76□□□□□ -1.81
CHD3-201ENST00000330494 PKD1P98161 4303 aa3.75□□□□□ -1.81
CHD3-201ENST00000330494 SPRR2EP22531 72 aa3.74□□□□□ -1.81
CHD3-201ENST00000330494 SPRR2BP35325 72 aa3.74□□□□□ -1.81
CHD3-201ENST00000330494 SPRR2AP35326 72 aa3.74□□□□□ -1.81
CHD3-201ENST00000330494 TNXBP22105 4242 aa3.71□□□□□ -1.82
CHD3-201ENST00000330494 MT1XP80297 61 aa3.69□□□□□ -1.82
CHD3-201ENST00000330494 LRP2P98164 4655 aa3.68□□□□□ -1.82
CHD3-201ENST00000330494 KRTAP4-8A0A0G2JLE6 195 aa3.68□□□□□ -1.82
CHD3-201ENST00000330494 KRTAP4-8Q9BYQ9 185 aa3.68□□□□□ -1.82
CHD3-201ENST00000330494 RYR2Q92736 4967 aa3.68□□□□□ -1.82
CHD3-201ENST00000330494 PKHD1L1Q86WI1 4243 aa3.68□□□□□ -1.82
CHD3-201ENST00000330494 KRTAP9-8Q9BYQ0 159 aa3.67□□□□□ -1.82
CHD3-201ENST00000330494 LCE3BQ5TA77 95 aa3.67□□□□□ -1.82
CHD3-201ENST00000330494 KRTAP19-8Q3LI54 63 aa3.67□□□□□ -1.82
CHD3-201ENST00000330494 MT1BP07438 61 aa3.64□□□□□ -1.83
CHD3-201ENST00000330494 MT1GP13640 62 aa3.64□□□□□ -1.83
CHD3-201ENST00000330494 LCE2CQ5TA81 110 aa3.61□□□□□ -1.83
CHD3-201ENST00000330494 KIAA1109Q2LD37 5005 aa3.6□□□□□ -1.83
CHD3-201ENST00000330494 SPRR2DP22532 72 aa3.6□□□□□ -1.83
CHD3-201ENST00000330494 KRTAP9-3Q9BYQ3 159 aa3.57□□□□□ -1.84
CHD3-201ENST00000330494 LCE2BO14633 110 aa3.55□□□□□ -1.84
CHD3-201ENST00000330494 KRTAP12-4P60329 112 aa3.54□□□□□ -1.84
CHD3-201ENST00000330494 HERC2O95714 4834 aa3.49□□□□□ -1.85
CHD3-201ENST00000330494 FLGP20930 4061 aaPredicted RBP3.49□□□□□ -1.85
CHD3-201ENST00000330494 BIRC6Q9NR09 4857 aa3.48□□□□□ -1.85
CHD3-201ENST00000330494 KMT2CQ8NEZ4 4911 aaKnown RBP3.48□□□□□ -1.85
CHD3-201ENST00000330494 KRTAP4-7Q9BYR0 210 aa3.47□□□□□ -1.85
CHD3-201ENST00000330494 KRTAP19-2Q3LHN2 52 aa3.4□□□□□ -1.86
CHD3-201ENST00000330494 KRTAP19-4Q3LI73 84 aa3.38□□□□□ -1.87
CHD3-201ENST00000330494 MT4P47944 62 aa3.34□□□□□ -1.88
CHD3-201ENST00000330494 KRTAP19-3Q7Z4W3 81 aa3.34□□□□□ -1.88
CHD3-201ENST00000330494 LCE2DQ5TA82 110 aaPredicted RBP3.33□□□□□ -1.88
CHD3-201ENST00000330494 EPPK1P58107 5090 aaKnown RBP3.32□□□□□ -1.88
CHD3-201ENST00000330494 MT1LQ93083 61 aa3.31□□□□□ -1.88
CHD3-201ENST00000330494 LOC100996750A0A140TA64 210 aa3.3□□□□□ -1.88
CHD3-201ENST00000330494 LCE3DQ9BYE3 92 aa3.3□□□□□ -1.88
CHD3-201ENST00000330494 HERC1Q15751 4861 aa3.3□□□□□ -1.88
CHD3-201ENST00000330494 MT1EP04732 61 aa3.3□□□□□ -1.88
CHD3-201ENST00000330494 MUC17Q685J3 4493 aa3.3□□□□□ -1.88
CHD3-201ENST00000330494 KRTAP9-2Q9BYQ4 174 aa3.29□□□□□ -1.88
CHD3-201ENST00000330494 ABCA13Q86UQ4 5058 aa3.29□□□□□ -1.88
CHD3-201ENST00000330494 KRTAP4-3Q9BYR4 195 aa3.29□□□□□ -1.88
CHD3-201ENST00000330494 PCLOQ9Y6V0 5065 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms