RNA–Protein interactions for RNA: ENST00000299847.6

CHRFAM7A-201, Transcript of CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHRFAM7A, Length 6,220 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRFAM7A-201ENST00000299847 COL7A1Q02388 2944 aa5.81□□□□□ -1.48
CHRFAM7A-201ENST00000299847 AKAP9Q99996 3911 aa5.79□□□□□ -1.48
CHRFAM7A-201ENST00000299847 KRTAP10-5P60370 271 aa5.73□□□□□ -1.49
CHRFAM7A-201ENST00000299847 KRTAP8-1Q8IUC2 63 aa5.64□□□□□ -1.51
CHRFAM7A-201ENST00000299847 DNAH9Q9NYC9 4486 aa5.6□□□□□ -1.51
CHRFAM7A-201ENST00000299847 DNAH1Q9P2D7 4330 aa5.57□□□□□ -1.52
CHRFAM7A-201ENST00000299847 ZNF469Q96JG9 3925 aaPredicted RBP5.53□□□□□ -1.52
CHRFAM7A-201ENST00000299847 KRTAP4-1Q9BYQ7 146 aa5.52□□□□□ -1.53
CHRFAM7A-201ENST00000299847 KRTAP23-1A1A580 65 aa5.5□□□□□ -1.53
CHRFAM7A-201ENST00000299847 DNAH10Q8IVF4 4471 aa5.47□□□□□ -1.53
CHRFAM7A-201ENST00000299847 DNAH5Q8TE73 4624 aa5.45□□□□□ -1.54
CHRFAM7A-201ENST00000299847 DNAH2Q9P225 4427 aa5.43□□□□□ -1.54
CHRFAM7A-201ENST00000299847 MT1HP80294 61 aa5.43□□□□□ -1.54
CHRFAM7A-201ENST00000299847 PLECQ15149 4684 aaKnown RBP5.38□□□□□ -1.55
CHRFAM7A-201ENST00000299847 DNAH3Q8TD57 4116 aa5.34□□□□□ -1.55
CHRFAM7A-201ENST00000299847 DNAH11Q96DT5 4516 aa5.31□□□□□ -1.56
CHRFAM7A-201ENST00000299847 ANK2Q01484 3957 aa5.31□□□□□ -1.56
CHRFAM7A-201ENST00000299847 MT2AP02795 61 aa5.31□□□□□ -1.56
CHRFAM7A-201ENST00000299847 DNAH8Q96JB1 4490 aa5.3□□□□□ -1.56
CHRFAM7A-201ENST00000299847 KRTAP19-5Q3LI72 72 aa5.29□□□□□ -1.56
CHRFAM7A-201ENST00000299847 SPRR2FQ96RM1 72 aa5.28□□□□□ -1.56
CHRFAM7A-201ENST00000299847 DNAH17Q9UFH2 4485 aa5.26□□□□□ -1.57
CHRFAM7A-201ENST00000299847 MT1FP04733 61 aa5.24□□□□□ -1.57
CHRFAM7A-201ENST00000299847 FRAS1Q86XX4 4008 aa5.23□□□□□ -1.57
CHRFAM7A-201ENST00000299847 FAT2Q9NYQ8 4349 aa5.22□□□□□ -1.57
CHRFAM7A-201ENST00000299847 VPS13DQ5THJ4 4388 aa5.21□□□□□ -1.58
CHRFAM7A-201ENST00000299847 STARD9Q9P2P6 4700 aa5.19□□□□□ -1.58
CHRFAM7A-201ENST00000299847 LRP1BQ9NZR2 4599 aa5.19□□□□□ -1.58
CHRFAM7A-201ENST00000299847 KRTAP10-7P60409 375 aaPredicted RBP5.18□□□□□ -1.58
CHRFAM7A-201ENST00000299847 SPRR2GQ9BYE4 73 aa5.17□□□□□ -1.58
CHRFAM7A-201ENST00000299847 KMT2AQ03164 3969 aa5.16□□□□□ -1.58
CHRFAM7A-201ENST00000299847 LCE3CQ5T5A8 94 aa5.13□□□□□ -1.59
CHRFAM7A-201ENST00000299847 VPS13BQ7Z7G8 4022 aa5.13□□□□□ -1.59
CHRFAM7A-201ENST00000299847 FAT1Q14517 4588 aa5.11□□□□□ -1.59
CHRFAM7A-201ENST00000299847 DYNC2H1Q8NCM8 4307 aaKnown RBP5.11□□□□□ -1.59
CHRFAM7A-201ENST00000299847 DYNC1H1Q14204 4646 aaKnown RBP5.1□□□□□ -1.59
CHRFAM7A-201ENST00000299847 SACSQ9NZJ4 4579 aa5.09□□□□□ -1.59
CHRFAM7A-201ENST00000299847 PRKDCP78527 4128 aaKnown RBP5.06□□□□□ -1.6
CHRFAM7A-201ENST00000299847 DNAH7Q8WXX0 4024 aa5.03□□□□□ -1.6
CHRFAM7A-201ENST00000299847 CMYA5Q8N3K9 4069 aa4.99□□□□□ -1.61
CHRFAM7A-201ENST00000299847 LCE3BQ5TA77 95 aa4.99□□□□□ -1.61
CHRFAM7A-201ENST00000299847 LYSTQ99698 3801 aa4.98□□□□□ -1.61
CHRFAM7A-201ENST00000299847 SPRR2EP22531 72 aa4.98□□□□□ -1.61
CHRFAM7A-201ENST00000299847 SPRR2BP35325 72 aa4.98□□□□□ -1.61
CHRFAM7A-201ENST00000299847 SPRR2AP35326 72 aa4.98□□□□□ -1.61
CHRFAM7A-201ENST00000299847 APOBP04114 4563 aaKnown RBP4.95□□□□□ -1.62
CHRFAM7A-201ENST00000299847 DNHD1Q96M86 4753 aa4.93□□□□□ -1.62
CHRFAM7A-201ENST00000299847 RYR1P21817 5038 aa4.91□□□□□ -1.62
CHRFAM7A-201ENST00000299847 DNAH6Q9C0G6 4158 aa4.9□□□□□ -1.62
CHRFAM7A-201ENST00000299847 MT1GP13640 62 aa4.9□□□□□ -1.63
CHRFAM7A-201ENST00000299847 KRTAP17-1Q9BYP8 105 aa4.87□□□□□ -1.63
CHRFAM7A-201ENST00000299847 SPRR2DP22532 72 aa4.79□□□□□ -1.64
CHRFAM7A-201ENST00000299847 KRTAP4-8A0A0G2JLE6 195 aa4.79□□□□□ -1.64
CHRFAM7A-201ENST00000299847 KRTAP19-1Q8IUB9 90 aa4.79□□□□□ -1.64
CHRFAM7A-201ENST00000299847 KRTAP4-8Q9BYQ9 185 aa4.79□□□□□ -1.64
CHRFAM7A-201ENST00000299847 HECTD4Q9Y4D8 3996 aa4.79□□□□□ -1.64
CHRFAM7A-201ENST00000299847 MT1XP80297 61 aa4.78□□□□□ -1.64
CHRFAM7A-201ENST00000299847 FAT3Q8TDW7 4589 aa4.77□□□□□ -1.65
CHRFAM7A-201ENST00000299847 KRTAP12-4P60329 112 aa4.73□□□□□ -1.65
CHRFAM7A-201ENST00000299847 RYR3Q15413 4870 aa4.71□□□□□ -1.66
CHRFAM7A-201ENST00000299847 LCE2BO14633 110 aa4.71□□□□□ -1.66
CHRFAM7A-201ENST00000299847 KRTAP19-8Q3LI54 63 aa4.71□□□□□ -1.66
CHRFAM7A-201ENST00000299847 MYCBP2O75592 4640 aa4.7□□□□□ -1.66
CHRFAM7A-201ENST00000299847 MT1BP07438 61 aa4.67□□□□□ -1.66
CHRFAM7A-201ENST00000299847 LPAP08519 4548 aa4.66□□□□□ -1.66
CHRFAM7A-201ENST00000299847 LRP1Q07954 4544 aaKnown RBP4.65□□□□□ -1.67
CHRFAM7A-201ENST00000299847 KRTAP9-8Q9BYQ0 159 aa4.61□□□□□ -1.67
CHRFAM7A-201ENST00000299847 KRTAP4-7Q9BYR0 210 aa4.59□□□□□ -1.68
CHRFAM7A-201ENST00000299847 HSPG2P98160 4391 aa4.58□□□□□ -1.68
CHRFAM7A-201ENST00000299847 PKD1P98161 4303 aa4.54□□□□□ -1.68
CHRFAM7A-201ENST00000299847 LCE3DQ9BYE3 92 aa4.53□□□□□ -1.68
CHRFAM7A-201ENST00000299847 KRTAP19-4Q3LI73 84 aa4.52□□□□□ -1.69
CHRFAM7A-201ENST00000299847 KRTAP9-3Q9BYQ3 159 aa4.51□□□□□ -1.69
CHRFAM7A-201ENST00000299847 SPRR5A0A1B0GTR4 108 aa4.49□□□□□ -1.69
CHRFAM7A-201ENST00000299847 PKHD1L1Q86WI1 4243 aa4.47□□□□□ -1.69
CHRFAM7A-201ENST00000299847 LCE2CQ5TA81 110 aa4.46□□□□□ -1.69
CHRFAM7A-201ENST00000299847 LCE3EQ5T5B0 92 aa4.42□□□□□ -1.7
CHRFAM7A-201ENST00000299847 HYDINQ4G0P3 5121 aa4.42□□□□□ -1.7
CHRFAM7A-201ENST00000299847 PKHD1P08F94 4074 aa4.4□□□□□ -1.7
CHRFAM7A-201ENST00000299847 TNXBP22105 4242 aa4.38□□□□□ -1.71
CHRFAM7A-201ENST00000299847 MT4P47944 62 aa4.37□□□□□ -1.71
CHRFAM7A-201ENST00000299847 LOC100996750A0A140TA64 210 aa4.37□□□□□ -1.71
CHRFAM7A-201ENST00000299847 LCE2DQ5TA82 110 aaPredicted RBP4.37□□□□□ -1.71
CHRFAM7A-201ENST00000299847 KRTAP19-3Q7Z4W3 81 aa4.37□□□□□ -1.71
CHRFAM7A-201ENST00000299847 RYR2Q92736 4967 aa4.35□□□□□ -1.71
CHRFAM7A-201ENST00000299847 MT1LQ93083 61 aa4.34□□□□□ -1.71
CHRFAM7A-201ENST00000299847 LRP2P98164 4655 aa4.33□□□□□ -1.72
CHRFAM7A-201ENST00000299847 HERC1Q15751 4861 aa4.31□□□□□ -1.72
CHRFAM7A-201ENST00000299847 KRTAP4-3Q9BYR4 195 aa4.3□□□□□ -1.72
CHRFAM7A-201ENST00000299847 MT1EP04732 61 aa4.29□□□□□ -1.72
CHRFAM7A-201ENST00000299847 KIAA1109Q2LD37 5005 aa4.27□□□□□ -1.73
CHRFAM7A-201ENST00000299847 PRM1P04553 51 aa4.25□□□□□ -1.73
CHRFAM7A-201ENST00000299847 LCE1BQ5T7P3 118 aa4.21□□□□□ -1.74
CHRFAM7A-201ENST00000299847 MT1MQ8N339 61 aa4.19□□□□□ -1.74
CHRFAM7A-201ENST00000299847 HERC2O95714 4834 aa4.18□□□□□ -1.74
CHRFAM7A-201ENST00000299847 LCE1DQ5T752 114 aa4.16□□□□□ -1.74
CHRFAM7A-201ENST00000299847 KRTAP19-2Q3LHN2 52 aa4.15□□□□□ -1.75
CHRFAM7A-201ENST00000299847 FLGP20930 4061 aaPredicted RBP4.15□□□□□ -1.75
CHRFAM7A-201ENST00000299847 MUC17Q685J3 4493 aa4.14□□□□□ -1.75
CHRFAM7A-201ENST00000299847 KMT2CQ8NEZ4 4911 aaKnown RBP4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms