RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 ALMS1Q8TCU4 4167 aa7.96□□□□□ -1.13
SMARCC1-201ENST00000254480 DNAH9Q9NYC9 4486 aa7.9□□□□□ -1.15
SMARCC1-201ENST00000254480 DNAH5Q8TE73 4624 aa7.84□□□□□ -1.15
SMARCC1-201ENST00000254480 INE1O15225 51 aa7.83□□□□□ -1.16
SMARCC1-201ENST00000254480 DNAH1Q9P2D7 4330 aa7.77□□□□□ -1.16
SMARCC1-201ENST00000254480 AKAP9Q99996 3911 aa7.77□□□□□ -1.17
SMARCC1-201ENST00000254480 KRTAP8-1Q8IUC2 63 aa7.76□□□□□ -1.17
SMARCC1-201ENST00000254480 KRTAP4-1Q9BYQ7 146 aa7.74□□□□□ -1.17
SMARCC1-201ENST00000254480 KRTAP10-5P60370 271 aa7.74□□□□□ -1.17
SMARCC1-201ENST00000254480 PLECQ15149 4684 aaKnown RBP7.66□□□□□ -1.18
SMARCC1-201ENST00000254480 DNAH11Q96DT5 4516 aa7.66□□□□□ -1.18
SMARCC1-201ENST00000254480 DNAH10Q8IVF4 4471 aa7.62□□□□□ -1.19
SMARCC1-201ENST00000254480 MT1HP80294 61 aa7.57□□□□□ -1.2
SMARCC1-201ENST00000254480 KRTAP23-1A1A580 65 aa7.55□□□□□ -1.2
SMARCC1-201ENST00000254480 DNAH2Q9P225 4427 aa7.52□□□□□ -1.21
SMARCC1-201ENST00000254480 DNHD1Q96M86 4753 aa7.52□□□□□ -1.21
SMARCC1-201ENST00000254480 FAT1Q14517 4588 aa7.49□□□□□ -1.21
SMARCC1-201ENST00000254480 MT2AP02795 61 aa7.44□□□□□ -1.22
SMARCC1-201ENST00000254480 LRP1BQ9NZR2 4599 aa7.4□□□□□ -1.22
SMARCC1-201ENST00000254480 DYNC1H1Q14204 4646 aaKnown RBP7.37□□□□□ -1.23
SMARCC1-201ENST00000254480 DNAH17Q9UFH2 4485 aa7.37□□□□□ -1.23
SMARCC1-201ENST00000254480 DNAH8Q96JB1 4490 aa7.37□□□□□ -1.23
SMARCC1-201ENST00000254480 VPS13DQ5THJ4 4388 aa7.36□□□□□ -1.23
SMARCC1-201ENST00000254480 STARD9Q9P2P6 4700 aa7.34□□□□□ -1.23
SMARCC1-201ENST00000254480 MT1FP04733 61 aa7.33□□□□□ -1.24
SMARCC1-201ENST00000254480 RYR1P21817 5038 aa7.32□□□□□ -1.24
SMARCC1-201ENST00000254480 SPRR2FQ96RM1 72 aa7.3□□□□□ -1.24
SMARCC1-201ENST00000254480 ANK2Q01484 3957 aa7.29□□□□□ -1.24
SMARCC1-201ENST00000254480 FAT2Q9NYQ8 4349 aa7.28□□□□□ -1.24
SMARCC1-201ENST00000254480 VPS13BQ7Z7G8 4022 aa7.26□□□□□ -1.25
SMARCC1-201ENST00000254480 SACSQ9NZJ4 4579 aa7.25□□□□□ -1.25
SMARCC1-201ENST00000254480 KRTAP19-5Q3LI72 72 aa7.25□□□□□ -1.25
SMARCC1-201ENST00000254480 SPRR2GQ9BYE4 73 aa7.23□□□□□ -1.25
SMARCC1-201ENST00000254480 KMT2AQ03164 3969 aa7.23□□□□□ -1.25
SMARCC1-201ENST00000254480 DNAH3Q8TD57 4116 aa7.19□□□□□ -1.26
SMARCC1-201ENST00000254480 LYSTQ99698 3801 aa7.17□□□□□ -1.26
SMARCC1-201ENST00000254480 PRKDCP78527 4128 aaKnown RBP7.16□□□□□ -1.26
SMARCC1-201ENST00000254480 DYNC2H1Q8NCM8 4307 aaKnown RBP7.13□□□□□ -1.27
SMARCC1-201ENST00000254480 KRTAP10-7P60409 375 aaPredicted RBP7.11□□□□□ -1.27
SMARCC1-201ENST00000254480 APOBP04114 4563 aaKnown RBP7.09□□□□□ -1.27
SMARCC1-201ENST00000254480 FRAS1Q86XX4 4008 aa7.04□□□□□ -1.28
SMARCC1-201ENST00000254480 MYCBP2O75592 4640 aa7.01□□□□□ -1.29
SMARCC1-201ENST00000254480 LCE3CQ5T5A8 94 aa7.01□□□□□ -1.29
SMARCC1-201ENST00000254480 KRTAP17-1Q9BYP8 105 aa6.99□□□□□ -1.29
SMARCC1-201ENST00000254480 FAT3Q8TDW7 4589 aa6.87□□□□□ -1.31
SMARCC1-201ENST00000254480 RYR3Q15413 4870 aa6.86□□□□□ -1.31
SMARCC1-201ENST00000254480 SPRR2EP22531 72 aa6.82□□□□□ -1.32
SMARCC1-201ENST00000254480 SPRR2BP35325 72 aa6.82□□□□□ -1.32
SMARCC1-201ENST00000254480 SPRR2AP35326 72 aa6.82□□□□□ -1.32
SMARCC1-201ENST00000254480 DNAH6Q9C0G6 4158 aa6.81□□□□□ -1.32
SMARCC1-201ENST00000254480 LRP1Q07954 4544 aaKnown RBP6.8□□□□□ -1.32
SMARCC1-201ENST00000254480 KRTAP19-1Q8IUB9 90 aa6.78□□□□□ -1.32
SMARCC1-201ENST00000254480 LCE3BQ5TA77 95 aa6.77□□□□□ -1.33
SMARCC1-201ENST00000254480 DNAH7Q8WXX0 4024 aa6.75□□□□□ -1.33
SMARCC1-201ENST00000254480 CMYA5Q8N3K9 4069 aa6.72□□□□□ -1.33
SMARCC1-201ENST00000254480 MT1GP13640 62 aa6.69□□□□□ -1.34
SMARCC1-201ENST00000254480 KIAA1109Q2LD37 5005 aa6.69□□□□□ -1.34
SMARCC1-201ENST00000254480 KRTAP4-8A0A0G2JLE6 195 aa6.67□□□□□ -1.34
SMARCC1-201ENST00000254480 KRTAP4-8Q9BYQ9 185 aa6.67□□□□□ -1.34
SMARCC1-201ENST00000254480 MT1XP80297 61 aa6.67□□□□□ -1.34
SMARCC1-201ENST00000254480 KRTAP19-8Q3LI54 63 aa6.64□□□□□ -1.35
SMARCC1-201ENST00000254480 HECTD4Q9Y4D8 3996 aa6.58□□□□□ -1.36
SMARCC1-201ENST00000254480 MT1BP07438 61 aa6.58□□□□□ -1.36
SMARCC1-201ENST00000254480 SPRR2DP22532 72 aa6.57□□□□□ -1.36
SMARCC1-201ENST00000254480 KRTAP9-8Q9BYQ0 159 aa6.54□□□□□ -1.36
SMARCC1-201ENST00000254480 LPAP08519 4548 aa6.52□□□□□ -1.37
SMARCC1-201ENST00000254480 LCE2BO14633 110 aa6.49□□□□□ -1.37
SMARCC1-201ENST00000254480 LRP2P98164 4655 aa6.47□□□□□ -1.37
SMARCC1-201ENST00000254480 HSPG2P98160 4391 aa6.45□□□□□ -1.38
SMARCC1-201ENST00000254480 KRTAP12-4P60329 112 aa6.43□□□□□ -1.38
SMARCC1-201ENST00000254480 RYR2Q92736 4967 aa6.4□□□□□ -1.39
SMARCC1-201ENST00000254480 LCE2CQ5TA81 110 aa6.39□□□□□ -1.39
SMARCC1-201ENST00000254480 KRTAP9-3Q9BYQ3 159 aa6.38□□□□□ -1.39
SMARCC1-201ENST00000254480 HYDINQ4G0P3 5121 aa6.37□□□□□ -1.39
SMARCC1-201ENST00000254480 HERC2O95714 4834 aa6.36□□□□□ -1.39
SMARCC1-201ENST00000254480 PKHD1P08F94 4074 aa6.36□□□□□ -1.39
SMARCC1-201ENST00000254480 PKD1P98161 4303 aa6.35□□□□□ -1.39
SMARCC1-201ENST00000254480 KRTAP4-7Q9BYR0 210 aa6.33□□□□□ -1.4
SMARCC1-201ENST00000254480 KRTAP19-4Q3LI73 84 aa6.32□□□□□ -1.4
SMARCC1-201ENST00000254480 PCLOQ9Y6V0 5065 aa6.22□□□□□ -1.41
SMARCC1-201ENST00000254480 LCE3DQ9BYE3 92 aa6.18□□□□□ -1.42
SMARCC1-201ENST00000254480 PKHD1L1Q86WI1 4243 aa6.18□□□□□ -1.42
SMARCC1-201ENST00000254480 KRTAP19-3Q7Z4W3 81 aa6.1□□□□□ -1.43
SMARCC1-201ENST00000254480 HERC1Q15751 4861 aa6.09□□□□□ -1.43
SMARCC1-201ENST00000254480 BIRC6Q9NR09 4857 aa6.09□□□□□ -1.43
SMARCC1-201ENST00000254480 KMT2CQ8NEZ4 4911 aaKnown RBP6.07□□□□□ -1.44
SMARCC1-201ENST00000254480 MT1LQ93083 61 aa6.04□□□□□ -1.44
SMARCC1-201ENST00000254480 LCE3EQ5T5B0 92 aa6.03□□□□□ -1.44
SMARCC1-201ENST00000254480 LCE2DQ5TA82 110 aaPredicted RBP6.02□□□□□ -1.45
SMARCC1-201ENST00000254480 SPRR5A0A1B0GTR4 108 aa6.02□□□□□ -1.45
SMARCC1-201ENST00000254480 TNXBP22105 4242 aa6□□□□□ -1.45
SMARCC1-201ENST00000254480 MT4P47944 62 aa6□□□□□ -1.45
SMARCC1-201ENST00000254480 MT1EP04732 61 aa5.99□□□□□ -1.45
SMARCC1-201ENST00000254480 LOC100996750A0A140TA64 210 aa5.99□□□□□ -1.45
SMARCC1-201ENST00000254480 KRTAP19-2Q3LHN2 52 aa5.99□□□□□ -1.45
SMARCC1-201ENST00000254480 KRTAP4-3Q9BYR4 195 aa5.94□□□□□ -1.46
SMARCC1-201ENST00000254480 FSIP2Q5CZC0 6907 aa5.92□□□□□ -1.46
SMARCC1-201ENST00000254480 EPPK1P58107 5090 aaKnown RBP5.9□□□□□ -1.47
SMARCC1-201ENST00000254480 FLGP20930 4061 aaPredicted RBP5.84□□□□□ -1.47
SMARCC1-201ENST00000254480 MT1MQ8N339 61 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms