RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 HUWE1Q7Z6Z7 4374 aaKnown RBP5.62□□□□□ -1.51
SF3A1-201ENST00000215793 KRTAP8-1Q8IUC2 63 aa5.56□□□□□ -1.52
SF3A1-201ENST00000215793 DNAH5Q8TE73 4624 aa5.49□□□□□ -1.53
SF3A1-201ENST00000215793 KRTAP10-5P60370 271 aa5.49□□□□□ -1.53
SF3A1-201ENST00000215793 ALMS1Q8TCU4 4167 aa5.47□□□□□ -1.53
SF3A1-201ENST00000215793 ZNF469Q96JG9 3925 aaPredicted RBP5.44□□□□□ -1.54
SF3A1-201ENST00000215793 PLECQ15149 4684 aaKnown RBP5.43□□□□□ -1.54
SF3A1-201ENST00000215793 KRTAP4-1Q9BYQ7 146 aa5.41□□□□□ -1.54
SF3A1-201ENST00000215793 MT1HP80294 61 aa5.38□□□□□ -1.55
SF3A1-201ENST00000215793 SPRR2GQ9BYE4 73 aa5.38□□□□□ -1.55
SF3A1-201ENST00000215793 DNAH10Q8IVF4 4471 aa5.36□□□□□ -1.55
SF3A1-201ENST00000215793 MT2AP02795 61 aa5.35□□□□□ -1.55
SF3A1-201ENST00000215793 FAT1Q14517 4588 aa5.34□□□□□ -1.55
SF3A1-201ENST00000215793 DNAH9Q9NYC9 4486 aa5.32□□□□□ -1.56
SF3A1-201ENST00000215793 DNAH11Q96DT5 4516 aa5.29□□□□□ -1.56
SF3A1-201ENST00000215793 CSMD3Q7Z407 3707 aa5.27□□□□□ -1.57
SF3A1-201ENST00000215793 DNAH1Q9P2D7 4330 aa5.22□□□□□ -1.57
SF3A1-201ENST00000215793 MT1FP04733 61 aa5.21□□□□□ -1.57
SF3A1-201ENST00000215793 DNAH2Q9P225 4427 aa5.21□□□□□ -1.57
SF3A1-201ENST00000215793 KRTAP19-4Q3LI73 84 aa5.19□□□□□ -1.58
SF3A1-201ENST00000215793 DNHD1Q96M86 4753 aa5.16□□□□□ -1.58
SF3A1-201ENST00000215793 KRTAP10-7P60409 375 aaPredicted RBP5.16□□□□□ -1.58
SF3A1-201ENST00000215793 KRTAP19-5Q3LI72 72 aa5.16□□□□□ -1.58
SF3A1-201ENST00000215793 DYNC1H1Q14204 4646 aaKnown RBP5.14□□□□□ -1.59
SF3A1-201ENST00000215793 SPRR2FQ96RM1 72 aa5.13□□□□□ -1.59
SF3A1-201ENST00000215793 LCE3CQ5T5A8 94 aa5.13□□□□□ -1.59
SF3A1-201ENST00000215793 RYR1P21817 5038 aa5.12□□□□□ -1.59
SF3A1-201ENST00000215793 DNAH8Q96JB1 4490 aa5.12□□□□□ -1.59
SF3A1-201ENST00000215793 DNAH17Q9UFH2 4485 aa5.1□□□□□ -1.59
SF3A1-201ENST00000215793 VPS13DQ5THJ4 4388 aa5.08□□□□□ -1.6
SF3A1-201ENST00000215793 SACSQ9NZJ4 4579 aa5.07□□□□□ -1.6
SF3A1-201ENST00000215793 LRP1BQ9NZR2 4599 aa5.06□□□□□ -1.6
SF3A1-201ENST00000215793 ANK2Q01484 3957 aa5.05□□□□□ -1.6
SF3A1-201ENST00000215793 KRTAP19-8Q3LI54 63 aa4.99□□□□□ -1.61
SF3A1-201ENST00000215793 KRTAP19-1Q8IUB9 90 aa4.94□□□□□ -1.62
SF3A1-201ENST00000215793 CMYA5Q8N3K9 4069 aa4.94□□□□□ -1.62
SF3A1-201ENST00000215793 APOBP04114 4563 aaKnown RBP4.94□□□□□ -1.62
SF3A1-201ENST00000215793 LYSTQ99698 3801 aa4.93□□□□□ -1.62
SF3A1-201ENST00000215793 FAT2Q9NYQ8 4349 aa4.92□□□□□ -1.62
SF3A1-201ENST00000215793 DYNC2H1Q8NCM8 4307 aaKnown RBP4.9□□□□□ -1.63
SF3A1-201ENST00000215793 DNAH3Q8TD57 4116 aa4.88□□□□□ -1.63
SF3A1-201ENST00000215793 STARD9Q9P2P6 4700 aa4.87□□□□□ -1.63
SF3A1-201ENST00000215793 FAT3Q8TDW7 4589 aa4.84□□□□□ -1.63
SF3A1-201ENST00000215793 LRP1Q07954 4544 aaKnown RBP4.84□□□□□ -1.64
SF3A1-201ENST00000215793 RYR3Q15413 4870 aa4.82□□□□□ -1.64
SF3A1-201ENST00000215793 MT1XP80297 61 aa4.81□□□□□ -1.64
SF3A1-201ENST00000215793 KIAA1109Q2LD37 5005 aa4.79□□□□□ -1.64
SF3A1-201ENST00000215793 DNAH7Q8WXX0 4024 aa4.78□□□□□ -1.64
SF3A1-201ENST00000215793 SPRR2EP22531 72 aa4.77□□□□□ -1.65
SF3A1-201ENST00000215793 SPRR2BP35325 72 aa4.77□□□□□ -1.65
SF3A1-201ENST00000215793 SPRR2AP35326 72 aa4.77□□□□□ -1.65
SF3A1-201ENST00000215793 MYCBP2O75592 4640 aa4.77□□□□□ -1.65
SF3A1-201ENST00000215793 MT1BP07438 61 aa4.76□□□□□ -1.65
SF3A1-201ENST00000215793 VPS13BQ7Z7G8 4022 aa4.74□□□□□ -1.65
SF3A1-201ENST00000215793 LCE3BQ5TA77 95 aa4.72□□□□□ -1.65
SF3A1-201ENST00000215793 FRAS1Q86XX4 4008 aa4.71□□□□□ -1.65
SF3A1-201ENST00000215793 KRTAP9-8Q9BYQ0 159 aa4.7□□□□□ -1.66
SF3A1-201ENST00000215793 MT1GP13640 62 aa4.68□□□□□ -1.66
SF3A1-201ENST00000215793 KRTAP12-4P60329 112 aa4.68□□□□□ -1.66
SF3A1-201ENST00000215793 KRTAP17-1Q9BYP8 105 aa4.68□□□□□ -1.66
SF3A1-201ENST00000215793 RYR2Q92736 4967 aa4.67□□□□□ -1.66
SF3A1-201ENST00000215793 HECTD4Q9Y4D8 3996 aa4.66□□□□□ -1.66
SF3A1-201ENST00000215793 SPRR5A0A1B0GTR4 108 aa4.66□□□□□ -1.66
SF3A1-201ENST00000215793 PRKDCP78527 4128 aaKnown RBP4.65□□□□□ -1.66
SF3A1-201ENST00000215793 LCE2BO14633 110 aa4.64□□□□□ -1.67
SF3A1-201ENST00000215793 SPRR2DP22532 72 aa4.62□□□□□ -1.67
SF3A1-201ENST00000215793 KRTAP9-3Q9BYQ3 159 aa4.61□□□□□ -1.67
SF3A1-201ENST00000215793 KRTAP4-8A0A0G2JLE6 195 aa4.6□□□□□ -1.67
SF3A1-201ENST00000215793 KRTAP4-8Q9BYQ9 185 aa4.6□□□□□ -1.67
SF3A1-201ENST00000215793 HERC1Q15751 4861 aa4.58□□□□□ -1.68
SF3A1-201ENST00000215793 LCE2CQ5TA81 110 aa4.58□□□□□ -1.68
SF3A1-201ENST00000215793 KMT2AQ03164 3969 aa4.58□□□□□ -1.68
SF3A1-201ENST00000215793 LCE3DQ9BYE3 92 aa4.55□□□□□ -1.68
SF3A1-201ENST00000215793 HERC2O95714 4834 aa4.52□□□□□ -1.69
SF3A1-201ENST00000215793 PKD1P98161 4303 aa4.51□□□□□ -1.69
SF3A1-201ENST00000215793 PCLOQ9Y6V0 5065 aa4.51□□□□□ -1.69
SF3A1-201ENST00000215793 DNAH6Q9C0G6 4158 aa4.49□□□□□ -1.69
SF3A1-201ENST00000215793 LCE3EQ5T5B0 92 aa4.49□□□□□ -1.69
SF3A1-201ENST00000215793 HSPG2P98160 4391 aa4.48□□□□□ -1.69
SF3A1-201ENST00000215793 KRTAP19-3Q7Z4W3 81 aa4.46□□□□□ -1.69
SF3A1-201ENST00000215793 LRP2P98164 4655 aa4.43□□□□□ -1.7
SF3A1-201ENST00000215793 MT1LQ93083 61 aa4.43□□□□□ -1.7
SF3A1-201ENST00000215793 SYNE1Q8NF91 8797 aaKnown RBP4.4□□□□□ -1.7
SF3A1-201ENST00000215793 EPPK1P58107 5090 aaKnown RBP4.4□□□□□ -1.71
SF3A1-201ENST00000215793 BIRC6Q9NR09 4857 aa4.39□□□□□ -1.71
SF3A1-201ENST00000215793 MT1EP04732 61 aa4.36□□□□□ -1.71
SF3A1-201ENST00000215793 KRTAP19-2Q3LHN2 52 aa4.33□□□□□ -1.72
SF3A1-201ENST00000215793 KRTAP4-7Q9BYR0 210 aa4.32□□□□□ -1.72
SF3A1-201ENST00000215793 HYDINQ4G0P3 5121 aa4.26□□□□□ -1.73
SF3A1-201ENST00000215793 LCE2DQ5TA82 110 aaPredicted RBP4.26□□□□□ -1.73
SF3A1-201ENST00000215793 MT3P25713 68 aa4.24□□□□□ -1.73
SF3A1-201ENST00000215793 PKHD1L1Q86WI1 4243 aa4.24□□□□□ -1.73
SF3A1-201ENST00000215793 MT1MQ8N339 61 aa4.23□□□□□ -1.73
SF3A1-201ENST00000215793 KMT2CQ8NEZ4 4911 aaKnown RBP4.23□□□□□ -1.73
SF3A1-201ENST00000215793 MUC17Q685J3 4493 aa4.22□□□□□ -1.73
SF3A1-201ENST00000215793 KRTAP19-6Q3LI70 58 aa4.19□□□□□ -1.74
SF3A1-201ENST00000215793 PKHD1P08F94 4074 aa4.17□□□□□ -1.74
SF3A1-201ENST00000215793 ABCA13Q86UQ4 5058 aa4.15□□□□□ -1.75
SF3A1-201ENST00000215793 FLGP20930 4061 aaPredicted RBP4.12□□□□□ -1.75
SF3A1-201ENST00000215793 LPAP08519 4548 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms