RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 COL7A1Q02388 2944 aa4.16□□□□□ -1.74
SCN1A-213ENST00000636759 ALMS1Q8TCU4 4167 aa4.15□□□□□ -1.74
SCN1A-213ENST00000636759 NOTCH2Q04721 2471 aa4.15□□□□□ -1.74
SCN1A-213ENST00000636759 PLECQ15149 4684 aaKnown RBP4.14□□□□□ -1.75
SCN1A-213ENST00000636759 KRTAP7-1Q8IUC3 87 aa4.14□□□□□ -1.75
SCN1A-213ENST00000636759 FBN3Q75N90 2809 aa4.13□□□□□ -1.75
SCN1A-213ENST00000636759 DNAH8Q96JB1 4490 aa4.13□□□□□ -1.75
SCN1A-213ENST00000636759 STARD9Q9P2P6 4700 aa4.12□□□□□ -1.75
SCN1A-213ENST00000636759 A0A1B0GVX0 72 aa4.12□□□□□ -1.75
SCN1A-213ENST00000636759 DMAC1Q96GE9 116 aa4.12□□□□□ -1.75
SCN1A-213ENST00000636759 KMT2AQ03164 3969 aa4.11□□□□□ -1.75
SCN1A-213ENST00000636759 ATRQ13535 2644 aa4.11□□□□□ -1.75
SCN1A-213ENST00000636759 PKD1P98161 4303 aa4.1□□□□□ -1.75
SCN1A-213ENST00000636759 K7EIL1 84 aa4.1□□□□□ -1.75
SCN1A-213ENST00000636759 DNAH17Q9UFH2 4485 aa4.09□□□□□ -1.75
SCN1A-213ENST00000636759 IGLV5-52A0A0A0MRZ9 124 aa4.09□□□□□ -1.76
SCN1A-213ENST00000636759 A8MUU9 505 aa4.09□□□□□ -1.76
SCN1A-213ENST00000636759 IGLV7-43P04211 117 aa4.09□□□□□ -1.76
SCN1A-213ENST00000636759 SPRR1BP22528 89 aa4.08□□□□□ -1.76
SCN1A-213ENST00000636759 LINC01556Q5JQF7 62 aa4.08□□□□□ -1.76
SCN1A-213ENST00000636759 TENM2Q9NT68 2774 aa4.08□□□□□ -1.76
SCN1A-213ENST00000636759 MAST4O15021 2626 aa4.08□□□□□ -1.76
SCN1A-213ENST00000636759 P0C880 135 aa4.08□□□□□ -1.76
SCN1A-213ENST00000636759 LINC00483Q53H64 154 aa4.08□□□□□ -1.76
SCN1A-213ENST00000636759 DNAH10OSP0CZ25 163 aa4.07□□□□□ -1.76
SCN1A-213ENST00000636759 SPINT4Q6UDR6 99 aa4.07□□□□□ -1.76
SCN1A-213ENST00000636759 IGLV9-49A0A0B4J1Y8 123 aa4.07□□□□□ -1.76
SCN1A-213ENST00000636759 KRTAP16-1A8MUX0 517 aa4.07□□□□□ -1.76
SCN1A-213ENST00000636759 DNAH11Q96DT5 4516 aa4.06□□□□□ -1.76
SCN1A-213ENST00000636759 SSBP3-AS1Q7Z2R9 100 aa4.06□□□□□ -1.76
SCN1A-213ENST00000636759 NOTCH2NLQ7Z3S9 236 aa4.06□□□□□ -1.76
SCN1A-213ENST00000636759 Q5W150 140 aa4.06□□□□□ -1.76
SCN1A-213ENST00000636759 Q96NJ1 140 aa4.05□□□□□ -1.76
SCN1A-213ENST00000636759 K7ERS5 55 aa4.04□□□□□ -1.76
SCN1A-213ENST00000636759 FAT2Q9NYQ8 4349 aa4.04□□□□□ -1.76
SCN1A-213ENST00000636759 SRRM2Q9UQ35 2752 aaKnown RBP4.04□□□□□ -1.76
SCN1A-213ENST00000636759 SPINK6Q6UWN8 80 aa4.03□□□□□ -1.76
SCN1A-213ENST00000636759 LINC00304Q8N9R0 145 aa4.03□□□□□ -1.76
SCN1A-213ENST00000636759 FLG2Q5D862 2391 aaPredicted RBP4.03□□□□□ -1.76
SCN1A-213ENST00000636759 NDUFAF8A1L188 74 aa4.03□□□□□ -1.76
SCN1A-213ENST00000636759 CASC10Q5T4H9 136 aa4.03□□□□□ -1.76
SCN1A-213ENST00000636759 CRIPTQ9P021 101 aa4.03□□□□□ -1.76
SCN1A-213ENST00000636759 DNAH5Q8TE73 4624 aa4.02□□□□□ -1.77
SCN1A-213ENST00000636759 SPINK1P00995 79 aa4.02□□□□□ -1.77
SCN1A-213ENST00000636759 FAM229AH3BQW9 127 aa4.01□□□□□ -1.77
SCN1A-213ENST00000636759 C20orf166-AS1Q96NR2 134 aa4.01□□□□□ -1.77
SCN1A-213ENST00000636759 STAB1Q9NY15 2570 aa4□□□□□ -1.77
SCN1A-213ENST00000636759 LY6G6CO95867 125 aa4□□□□□ -1.77
SCN1A-213ENST00000636759 NUPR2A6NF83 97 aa3.99□□□□□ -1.77
SCN1A-213ENST00000636759 KRTAP13-3Q3SY46 172 aa3.99□□□□□ -1.77
SCN1A-213ENST00000636759 FLNBO75369 2602 aaKnown RBP3.98□□□□□ -1.77
SCN1A-213ENST00000636759 KRTAP11-1Q8IUC1 163 aa3.97□□□□□ -1.77
SCN1A-213ENST00000636759 VPS13BQ7Z7G8 4022 aa3.97□□□□□ -1.77
SCN1A-213ENST00000636759 IGKV2-30P06310 120 aa3.97□□□□□ -1.77
SCN1A-213ENST00000636759 HYDINQ4G0P3 5121 aa3.97□□□□□ -1.77
SCN1A-213ENST00000636759 IGKV2D-30A0A075B6S6 120 aa3.96□□□□□ -1.77
SCN1A-213ENST00000636759 APLNQ9ULZ1 77 aa3.96□□□□□ -1.77
SCN1A-213ENST00000636759 PKHD1P08F94 4074 aa3.95□□□□□ -1.78
SCN1A-213ENST00000636759 DNHD1Q96M86 4753 aa3.95□□□□□ -1.78
SCN1A-213ENST00000636759 H0YAA0 97 aa3.95□□□□□ -1.78
SCN1A-213ENST00000636759 NBEAL1Q6ZS30 2694 aa3.95□□□□□ -1.78
SCN1A-213ENST00000636759 KRTAP1-5Q9BYS1 174 aa3.95□□□□□ -1.78
SCN1A-213ENST00000636759 A0A1B0GU33 70 aa3.94□□□□□ -1.78
SCN1A-213ENST00000636759 PANO1I0J062 215 aa3.94□□□□□ -1.78
SCN1A-213ENST00000636759 PSORS1C2Q9UIG4 136 aa3.94□□□□□ -1.78
SCN1A-213ENST00000636759 CHTF8P0CG12 524 aa3.94□□□□□ -1.78
SCN1A-213ENST00000636759 Q6ZSA8 131 aa3.93□□□□□ -1.78
SCN1A-213ENST00000636759 C14orf177Q52M58 125 aa3.93□□□□□ -1.78
SCN1A-213ENST00000636759 COL6A5A8TX70 2615 aa3.92□□□□□ -1.78
SCN1A-213ENST00000636759 LUZP6Q538Z0 58 aa3.91□□□□□ -1.78
SCN1A-213ENST00000636759 A0A087WTM6 91 aa3.91□□□□□ -1.78
SCN1A-213ENST00000636759 KRTAP13-1Q8IUC0 172 aa3.91□□□□□ -1.78
SCN1A-213ENST00000636759 NOTCH1P46531 2555 aa3.89□□□□□ -1.79
SCN1A-213ENST00000636759 PKHD1L1Q86WI1 4243 aa3.89□□□□□ -1.79
SCN1A-213ENST00000636759 Q6ZRN7 208 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-213ENST00000636759 J3QL48 77 aa3.89□□□□□ -1.79
SCN1A-213ENST00000636759 H1FX-AS1Q4G0G2 97 aa3.88□□□□□ -1.79
SCN1A-213ENST00000636759 WWC2-AS2Q96NR7 200 aa3.88□□□□□ -1.79
SCN1A-213ENST00000636759 SACSQ9NZJ4 4579 aa3.87□□□□□ -1.79
SCN1A-213ENST00000636759 CIRBP-AS1Q8TBR5 109 aa3.87□□□□□ -1.79
SCN1A-213ENST00000636759 Q8N1X5 172 aa3.87□□□□□ -1.79
SCN1A-213ENST00000636759 ANAPC11Q9NYG5 84 aa3.86□□□□□ -1.79
SCN1A-213ENST00000636759 NBDYA0A0U1RRE5 68 aa3.86□□□□□ -1.79
SCN1A-213ENST00000636759 MEGF8Q7Z7M0 2845 aa3.85□□□□□ -1.79
SCN1A-213ENST00000636759 UBE2DNLQ8IWF7 75 aa3.85□□□□□ -1.79
SCN1A-213ENST00000636759 KRTAP21-3Q3LHN1 58 aa3.84□□□□□ -1.79
SCN1A-213ENST00000636759 KRTAP15-1Q3LI76 137 aa3.84□□□□□ -1.79
SCN1A-213ENST00000636759 TYMSOSQ8TAI1 123 aa3.83□□□□□ -1.8
SCN1A-213ENST00000636759 STAB2Q8WWQ8 2551 aa3.83□□□□□ -1.8
SCN1A-213ENST00000636759 MGAM2Q2M2H8 2515 aa3.81□□□□□ -1.8
SCN1A-213ENST00000636759 LRP1BQ9NZR2 4599 aa3.8□□□□□ -1.8
SCN1A-213ENST00000636759 TPRXLQ17RH7 258 aa3.8□□□□□ -1.8
SCN1A-213ENST00000636759 SPACA4Q8TDM5 124 aa3.79□□□□□ -1.8
SCN1A-213ENST00000636759 RPL37P61927 97 aaKnown RBP3.79□□□□□ -1.8
SCN1A-213ENST00000636759 C10orf95Q9H7T3 257 aa3.78□□□□□ -1.8
SCN1A-213ENST00000636759 APOBP04114 4563 aaKnown RBP3.78□□□□□ -1.8
SCN1A-213ENST00000636759 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.77□□□□□ -1.81
SCN1A-213ENST00000636759 DMBT1Q9UGM3 2413 aaPredicted RBP3.77□□□□□ -1.81
SCN1A-213ENST00000636759 SEC61BP60468 96 aaKnown RBP3.75□□□□□ -1.81
SCN1A-213ENST00000636759 COX6B2Q6YFQ2 88 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 123 ms