RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 ORMDL1Q9P0S3 153 aa7.34□□□□□ -1.23
CLN3-249ENST00000636685 LAMTOR3Q9UHA4 124 aa7.34□□□□□ -1.23
CLN3-249ENST00000636685 TRAV23DV6A0A075B6W5 121 aa7.32□□□□□ -1.24
CLN3-249ENST00000636685 TRBV7-6A0A0J9YX20 115 aa7.31□□□□□ -1.24
CLN3-249ENST00000636685 TMEM256-PLSCR3K7ERE1 68 aa7.31□□□□□ -1.24
CLN3-249ENST00000636685 GHRHP01286 108 aa7.31□□□□□ -1.24
CLN3-249ENST00000636685 LINC00575Q6W349 94 aa7.31□□□□□ -1.24
CLN3-249ENST00000636685 ZNF73O43830 326 aaPredicted RBP7.3□□□□□ -1.24
CLN3-249ENST00000636685 C6orf99Q4VX62 202 aa7.3□□□□□ -1.24
CLN3-249ENST00000636685 OBSCN-AS1Q96MR7 158 aa7.3□□□□□ -1.24
CLN3-249ENST00000636685 A0A0G2JQZ4 141 aa7.29□□□□□ -1.24
CLN3-249ENST00000636685 hADV29S1A0JD25 119 aa7.29□□□□□ -1.24
CLN3-249ENST00000636685 JMJD7-PLA2G4BH0Y9G9 81 aa7.29□□□□□ -1.24
CLN3-249ENST00000636685 MT-ATP8P03928 68 aa7.29□□□□□ -1.24
CLN3-249ENST00000636685 Q75L30 129 aa7.29□□□□□ -1.24
CLN3-249ENST00000636685 COX7BP24311 80 aa7.25□□□□□ -1.25
CLN3-249ENST00000636685 C21orf62-AS1Q17RA5 79 aa7.24□□□□□ -1.25
CLN3-249ENST00000636685 LINC00643Q86TS7 51 aa7.24□□□□□ -1.25
CLN3-249ENST00000636685 CCKP06307 115 aa7.23□□□□□ -1.25
CLN3-249ENST00000636685 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.23□□□□□ -1.25
CLN3-249ENST00000636685 DEFB105AQ8NG35 78 aa7.23□□□□□ -1.25
CLN3-249ENST00000636685 C20orf166-AS1Q96NR2 134 aa7.23□□□□□ -1.25
CLN3-249ENST00000636685 IMUPQ9GZP8 106 aa7.23□□□□□ -1.25
CLN3-249ENST00000636685 ELOF1P60002 83 aaKnown RBP7.22□□□□□ -1.25
CLN3-249ENST00000636685 PDE6GP18545 87 aa7.21□□□□□ -1.26
CLN3-249ENST00000636685 C14orf132Q9NPU4 83 aa7.21□□□□□ -1.26
CLN3-249ENST00000636685 DHRS4-AS1Q9P1J3 65 aa7.21□□□□□ -1.26
CLN3-249ENST00000636685 FAM236DA0A1B0GTK5 79 aa7.2□□□□□ -1.26
CLN3-249ENST00000636685 FAM236CP0DP71 79 aa7.2□□□□□ -1.26
CLN3-249ENST00000636685 TRBV7-7A0A0K0K1E9 115 aa7.19□□□□□ -1.26
CLN3-249ENST00000636685 RBM3P98179 157 aaKnown RBP7.19□□□□□ -1.26
CLN3-249ENST00000636685 A0A1B0GV72 72 aa7.18□□□□□ -1.26
CLN3-249ENST00000636685 Q6ZQY7 126 aa7.17□□□□□ -1.26
CLN3-249ENST00000636685 LOC110117498A0A087WWA1 95 aa7.16□□□□□ -1.26
CLN3-249ENST00000636685 DSCR8Q96T75 97 aa7.15□□□□□ -1.26
CLN3-249ENST00000636685 Q6JHZ5 121 aa7.14□□□□□ -1.27
CLN3-249ENST00000636685 Q96NJ1 140 aa7.14□□□□□ -1.27
CLN3-249ENST00000636685 NDUFV3P56181 108 aaKnown RBP7.12□□□□□ -1.27
CLN3-249ENST00000636685 Q6ZQT0 140 aa7.12□□□□□ -1.27
CLN3-249ENST00000636685 ANAPC13Q9BS18 74 aa7.12□□□□□ -1.27
CLN3-249ENST00000636685 ATP5EP2Q5VTU8 51 aa7.1□□□□□ -1.27
CLN3-249ENST00000636685 UBL5Q9BZL1 73 aa7.1□□□□□ -1.27
CLN3-249ENST00000636685 TRBV7-4A0A0J9YYF1 115 aa7.07□□□□□ -1.28
CLN3-249ENST00000636685 A8MUU9 505 aa7.07□□□□□ -1.28
CLN3-249ENST00000636685 IGFL1Q6UW32 110 aa7.07□□□□□ -1.28
CLN3-249ENST00000636685 MDN1Q9NU22 5596 aa7.06□□□□□ -1.28
CLN3-249ENST00000636685 MPLKIPQ8TAP9 179 aa7.06□□□□□ -1.28
CLN3-249ENST00000636685 IGLV5-48A0A075B6I7 105 aa7.05□□□□□ -1.28
CLN3-249ENST00000636685 A0A1B0GW54 56 aa7.05□□□□□ -1.28
CLN3-249ENST00000636685 RBM12B-AS1Q9P1G2 102 aa7.05□□□□□ -1.28
CLN3-249ENST00000636685 IGKV3D-7A0A0C4DH55 119 aa7.04□□□□□ -1.28
CLN3-249ENST00000636685 KRTAP16-1A8MUX0 517 aa7.04□□□□□ -1.28
CLN3-249ENST00000636685 HRES1P13985 223 aa7.03□□□□□ -1.28
CLN3-249ENST00000636685 Q8N9P0 234 aaPredicted RBP7.03□□□□□ -1.28
CLN3-249ENST00000636685 KMT2DO14686 5537 aa7.02□□□□□ -1.29
CLN3-249ENST00000636685 FAM236AA0A1B0GUQ0 79 aa7.02□□□□□ -1.29
CLN3-249ENST00000636685 FAM236BA0A1B0GV22 79 aa7.02□□□□□ -1.29
CLN3-249ENST00000636685 ATOX1O00244 68 aa7□□□□□ -1.29
CLN3-249ENST00000636685 HIST1H4AP62805 103 aaKnown RBP7□□□□□ -1.29
CLN3-249ENST00000636685 CXCL6P80162 114 aa6.99□□□□□ -1.29
CLN3-249ENST00000636685 Q6ZVQ6 151 aa6.99□□□□□ -1.29
CLN3-249ENST00000636685 KRTAP2-3P0C7H8 128 aa6.96□□□□□ -1.3
CLN3-249ENST00000636685 NREPQ16612 68 aa6.96□□□□□ -1.3
CLN3-249ENST00000636685 KRTAP2-4Q9BYR9 128 aa6.96□□□□□ -1.3
CLN3-249ENST00000636685 F8WEM9 126 aa6.94□□□□□ -1.3
CLN3-249ENST00000636685 UQCRQO14949 82 aa6.94□□□□□ -1.3
CLN3-249ENST00000636685 CCDC179H3BU77 68 aa6.93□□□□□ -1.3
CLN3-249ENST00000636685 COX7CP15954 63 aa6.93□□□□□ -1.3
CLN3-249ENST00000636685 NOTCH2NLQ7Z3S9 236 aa6.93□□□□□ -1.3
CLN3-249ENST00000636685 A8MWP4 228 aa6.92□□□□□ -1.3
CLN3-249ENST00000636685 KRTAP5-9P26371 169 aa6.92□□□□□ -1.3
CLN3-249ENST00000636685 A0A087WVE0 104 aa6.91□□□□□ -1.3
CLN3-249ENST00000636685 SMIM20Q8N5G0 67 aa6.91□□□□□ -1.3
CLN3-249ENST00000636685 SERP2Q8N6R1 65 aa6.91□□□□□ -1.3
CLN3-249ENST00000636685 DSCR10P59022 87 aa6.9□□□□□ -1.3
CLN3-249ENST00000636685 A0A1W2PNM2 257 aa6.89□□□□□ -1.31
CLN3-249ENST00000636685 BPY2O14599 106 aa6.88□□□□□ -1.31
CLN3-249ENST00000636685 A6NN06 94 aa6.87□□□□□ -1.31
CLN3-249ENST00000636685 TRAV7A0A075B6U4 112 aa6.84□□□□□ -1.31
CLN3-249ENST00000636685 IGKV4-1P06312 121 aa6.8□□□□□ -1.32
CLN3-249ENST00000636685 SS18L2Q9UHA2 77 aa6.78□□□□□ -1.32
CLN3-249ENST00000636685 LINC00313P59037 77 aa6.75□□□□□ -1.33
CLN3-249ENST00000636685 A0A087WSZ3 146 aa6.74□□□□□ -1.33
CLN3-249ENST00000636685 Q8N9L7 120 aa6.73□□□□□ -1.33
CLN3-249ENST00000636685 J3KT08 172 aa6.71□□□□□ -1.34
CLN3-249ENST00000636685 TMEM258P61165 79 aa6.71□□□□□ -1.34
CLN3-249ENST00000636685 C20orf197Q8N268 126 aa6.7□□□□□ -1.34
CLN3-249ENST00000636685 KRTAP2-2Q9BYT5 123 aa6.7□□□□□ -1.34
CLN3-249ENST00000636685 KRTAP2-1Q9BYU5 128 aa6.7□□□□□ -1.34
CLN3-249ENST00000636685 NDUFC1O43677 76 aa6.69□□□□□ -1.34
CLN3-249ENST00000636685 KLKP1Q107X0 134 aa6.69□□□□□ -1.34
CLN3-249ENST00000636685 OCR1Q9BZK8 76 aa6.69□□□□□ -1.34
CLN3-249ENST00000636685 MT1BP07438 61 aa6.68□□□□□ -1.34
CLN3-249ENST00000636685 LINC00472Q9H8W2 130 aa6.68□□□□□ -1.34
CLN3-249ENST00000636685 GPR98Q8WXG9 6306 aa6.67□□□□□ -1.34
CLN3-249ENST00000636685 HCG22E2RYF7 251 aa6.67□□□□□ -1.34
CLN3-249ENST00000636685 K7EQZ3 153 aa6.67□□□□□ -1.34
CLN3-249ENST00000636685 SPINK7P58062 85 aa6.67□□□□□ -1.34
CLN3-249ENST00000636685 RPS28P62857 69 aaKnown RBP6.67□□□□□ -1.34
CLN3-249ENST00000636685 KRTAP10-5P60370 271 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 183.3 ms