RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 P0C880 135 aa6.45□□□□□ -1.38
LIG1-220ENST00000601091 FAM229AH3BQW9 127 aa6.44□□□□□ -1.38
LIG1-220ENST00000601091 KMT2BQ9UMN6 2715 aaPredicted RBP6.44□□□□□ -1.38
LIG1-220ENST00000601091 SSBP3-AS1Q7Z2R9 100 aa6.43□□□□□ -1.38
LIG1-220ENST00000601091 STAB2Q8WWQ8 2551 aa6.43□□□□□ -1.38
LIG1-220ENST00000601091 NOTCH2NLQ7Z3S9 236 aa6.42□□□□□ -1.38
LIG1-220ENST00000601091 KRTAP1-5Q9BYS1 174 aa6.42□□□□□ -1.38
LIG1-220ENST00000601091 IGLV8-61A0A075B6I0 122 aa6.41□□□□□ -1.38
LIG1-220ENST00000601091 CRIPTQ9P021 101 aa6.41□□□□□ -1.38
LIG1-220ENST00000601091 A0A087WTM6 91 aa6.4□□□□□ -1.38
LIG1-220ENST00000601091 LINC00483Q53H64 154 aa6.4□□□□□ -1.38
LIG1-220ENST00000601091 KRTAP25-1Q3LHN0 102 aa6.4□□□□□ -1.39
LIG1-220ENST00000601091 UQCR11O14957 56 aa6.39□□□□□ -1.39
LIG1-220ENST00000601091 ZNF861PO60384 105 aa6.39□□□□□ -1.39
LIG1-220ENST00000601091 MRPL34Q9BQ48 92 aaKnown RBP6.39□□□□□ -1.39
LIG1-220ENST00000601091 SPRR1BP22528 89 aa6.38□□□□□ -1.39
LIG1-220ENST00000601091 A0A1B0GVX0 72 aa6.37□□□□□ -1.39
LIG1-220ENST00000601091 KRTAP7-1Q8IUC3 87 aa6.37□□□□□ -1.39
LIG1-220ENST00000601091 PSORS1C2Q9UIG4 136 aa6.37□□□□□ -1.39
LIG1-220ENST00000601091 ANAPC11Q9NYG5 84 aa6.36□□□□□ -1.39
LIG1-220ENST00000601091 DMBT1Q9UGM3 2413 aaPredicted RBP6.35□□□□□ -1.39
LIG1-220ENST00000601091 LCE6AA0A183 80 aa6.34□□□□□ -1.39
LIG1-220ENST00000601091 LINC00472Q9H8W2 130 aa6.34□□□□□ -1.39
LIG1-220ENST00000601091 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.34□□□□□ -1.39
LIG1-220ENST00000601091 A8MUU9 505 aa6.33□□□□□ -1.4
LIG1-220ENST00000601091 ACYP2P14621 99 aa6.32□□□□□ -1.4
LIG1-220ENST00000601091 SPACA4Q8TDM5 124 aa6.32□□□□□ -1.4
LIG1-220ENST00000601091 A0A087X002 238 aa6.32□□□□□ -1.4
LIG1-220ENST00000601091 MMP24-AS1A0A0U1RRL7 71 aa6.3□□□□□ -1.4
LIG1-220ENST00000601091 ANK3Q12955 4377 aaKnown RBP6.29□□□□□ -1.4
LIG1-220ENST00000601091 IGLV7-46A0A075B6I9 117 aa6.29□□□□□ -1.4
LIG1-220ENST00000601091 IGLV7-43P04211 117 aa6.29□□□□□ -1.4
LIG1-220ENST00000601091 DMAC1Q96GE9 116 aa6.28□□□□□ -1.4
LIG1-220ENST00000601091 KRTAP29-1A8MX34 341 aaPredicted RBP6.27□□□□□ -1.41
LIG1-220ENST00000601091 IGKV2D-30A0A075B6S6 120 aa6.26□□□□□ -1.41
LIG1-220ENST00000601091 IGKV2-30P06310 120 aa6.26□□□□□ -1.41
LIG1-220ENST00000601091 SPATA8Q6RVD6 105 aa6.26□□□□□ -1.41
LIG1-220ENST00000601091 KRTAP11-1Q8IUC1 163 aa6.25□□□□□ -1.41
LIG1-220ENST00000601091 PANO1I0J062 215 aa6.25□□□□□ -1.41
LIG1-220ENST00000601091 HRES1P13985 223 aa6.24□□□□□ -1.41
LIG1-220ENST00000601091 PLAC8Q9NZF1 115 aa6.24□□□□□ -1.41
LIG1-220ENST00000601091 WWC2-AS2Q96NR7 200 aa6.22□□□□□ -1.41
LIG1-220ENST00000601091 TYMSOSQ8TAI1 123 aa6.2□□□□□ -1.42
LIG1-220ENST00000601091 SPINK1P00995 79 aa6.19□□□□□ -1.42
LIG1-220ENST00000601091 Q6ZRN7 208 aaPredicted RBP6.16□□□□□ -1.42
LIG1-220ENST00000601091 Q96NJ1 140 aa6.16□□□□□ -1.42
LIG1-220ENST00000601091 KRTAP13-1Q8IUC0 172 aa6.14□□□□□ -1.43
LIG1-220ENST00000601091 TGP01266 2768 aa6.12□□□□□ -1.43
LIG1-220ENST00000601091 ANK2Q01484 3957 aa6.09□□□□□ -1.44
LIG1-220ENST00000601091 LINC00304Q8N9R0 145 aa6.08□□□□□ -1.44
LIG1-220ENST00000601091 Q5W150 140 aa6.08□□□□□ -1.44
LIG1-220ENST00000601091 DNAH10Q8IVF4 4471 aa6.05□□□□□ -1.44
LIG1-220ENST00000601091 CAMK2N1Q7Z7J9 78 aa6.04□□□□□ -1.44
LIG1-220ENST00000601091 FBN3Q75N90 2809 aa6.03□□□□□ -1.44
LIG1-220ENST00000601091 KRTAP10-2P60368 255 aa6.02□□□□□ -1.45
LIG1-220ENST00000601091 LYSTQ99698 3801 aa6.01□□□□□ -1.45
LIG1-220ENST00000601091 SMR3BP02814 79 aaPredicted RBP6□□□□□ -1.45
LIG1-220ENST00000601091 KRTAP10-1P60331 282 aa5.98□□□□□ -1.45
LIG1-220ENST00000601091 Q8N1X5 172 aa5.98□□□□□ -1.45
LIG1-220ENST00000601091 C9orf92A6NGG3 77 aa5.97□□□□□ -1.45
LIG1-220ENST00000601091 KRTAP13-2Q52LG2 175 aa5.9□□□□□ -1.47
LIG1-220ENST00000601091 KRTAP15-1Q3LI76 137 aa5.87□□□□□ -1.47
LIG1-220ENST00000601091 MEGF8Q7Z7M0 2845 aa5.85□□□□□ -1.47
LIG1-220ENST00000601091 DNAH9Q9NYC9 4486 aa5.81□□□□□ -1.48
LIG1-220ENST00000601091 A0A1B0GU33 70 aa5.8□□□□□ -1.48
LIG1-220ENST00000601091 Q6ZSA8 131 aa5.79□□□□□ -1.48
LIG1-220ENST00000601091 C10orf95Q9H7T3 257 aa5.79□□□□□ -1.48
LIG1-220ENST00000601091 HUWE1Q7Z6Z7 4374 aaKnown RBP5.79□□□□□ -1.48
LIG1-220ENST00000601091 FRAS1Q86XX4 4008 aa5.76□□□□□ -1.49
LIG1-220ENST00000601091 RPS29P62273 56 aaKnown RBP5.76□□□□□ -1.49
LIG1-220ENST00000601091 KRTAP1-4P0C5Y4 121 aa5.75□□□□□ -1.49
LIG1-220ENST00000601091 DNAH7Q8WXX0 4024 aa5.73□□□□□ -1.49
LIG1-220ENST00000601091 A0A0D9SG42 100 aa5.73□□□□□ -1.49
LIG1-220ENST00000601091 KRTAP13-3Q3SY46 172 aa5.73□□□□□ -1.49
LIG1-220ENST00000601091 PLECQ15149 4684 aaKnown RBP5.68□□□□□ -1.5
LIG1-220ENST00000601091 DNAH1Q9P2D7 4330 aa5.68□□□□□ -1.5
LIG1-220ENST00000601091 H0YAA0 97 aa5.68□□□□□ -1.5
LIG1-220ENST00000601091 CMYA5Q8N3K9 4069 aa5.67□□□□□ -1.5
LIG1-220ENST00000601091 TPRXLQ17RH7 258 aa5.67□□□□□ -1.5
LIG1-220ENST00000601091 COX6B2Q6YFQ2 88 aa5.66□□□□□ -1.5
LIG1-220ENST00000601091 H1FX-AS1Q4G0G2 97 aa5.64□□□□□ -1.51
LIG1-220ENST00000601091 R4GN34 69 aa5.61□□□□□ -1.51
LIG1-220ENST00000601091 DNAH8Q96JB1 4490 aa5.6□□□□□ -1.51
LIG1-220ENST00000601091 KMT2AQ03164 3969 aa5.6□□□□□ -1.51
LIG1-220ENST00000601091 S4R3F8 94 aa5.58□□□□□ -1.52
LIG1-220ENST00000601091 Q5VSD8 79 aa5.57□□□□□ -1.52
LIG1-220ENST00000601091 DNAH17Q9UFH2 4485 aa5.55□□□□□ -1.52
LIG1-220ENST00000601091 RPL37P61927 97 aaKnown RBP5.54□□□□□ -1.52
LIG1-220ENST00000601091 STARD9Q9P2P6 4700 aa5.53□□□□□ -1.52
LIG1-220ENST00000601091 KRTAP21-3Q3LHN1 58 aa5.53□□□□□ -1.52
LIG1-220ENST00000601091 DNAH11Q96DT5 4516 aa5.53□□□□□ -1.52
LIG1-220ENST00000601091 KRTAP23-1A1A580 65 aa5.52□□□□□ -1.53
LIG1-220ENST00000601091 DNHD1Q96M86 4753 aa5.5□□□□□ -1.53
LIG1-220ENST00000601091 DNAH6Q9C0G6 4158 aa5.48□□□□□ -1.53
LIG1-220ENST00000601091 PLAC4Q8WY50 150 aa5.48□□□□□ -1.53
LIG1-220ENST00000601091 ALMS1Q8TCU4 4167 aa5.47□□□□□ -1.53
LIG1-220ENST00000601091 LRP1BQ9NZR2 4599 aa5.44□□□□□ -1.54
LIG1-220ENST00000601091 PRKDCP78527 4128 aaKnown RBP5.43□□□□□ -1.54
LIG1-220ENST00000601091 DNAH3Q8TD57 4116 aa5.43□□□□□ -1.54
LIG1-220ENST00000601091 HECTD4Q9Y4D8 3996 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms