RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 HRES1P13985 223 aa4.27□□□□□ -1.73
SHKBP1-220ENST00000599716 UBE2V1Q13404 147 aa4.27□□□□□ -1.73
SHKBP1-220ENST00000599716 NOTCH2NLQ7Z3S9 236 aa4.27□□□□□ -1.73
SHKBP1-220ENST00000599716 K7ERU9 68 aa4.26□□□□□ -1.73
SHKBP1-220ENST00000599716 SIGMAR1Q99720 223 aa4.26□□□□□ -1.73
SHKBP1-220ENST00000599716 BATFQ16520 125 aa4.25□□□□□ -1.73
SHKBP1-220ENST00000599716 SPATA45Q537H7 98 aa4.25□□□□□ -1.73
SHKBP1-220ENST00000599716 MPLKIPQ8TAP9 179 aa4.25□□□□□ -1.73
SHKBP1-220ENST00000599716 FAM218AQ96MZ4 157 aa4.25□□□□□ -1.73
SHKBP1-220ENST00000599716 A0A1B0GV72 72 aa4.24□□□□□ -1.73
SHKBP1-220ENST00000599716 TMEM238LA0A1B0GVL6 79 aa4.24□□□□□ -1.73
SHKBP1-220ENST00000599716 DEFB116Q30KQ4 102 aa4.24□□□□□ -1.73
SHKBP1-220ENST00000599716 VPS25Q9BRG1 176 aa4.24□□□□□ -1.73
SHKBP1-220ENST00000599716 SS18L2Q9UHA2 77 aa4.24□□□□□ -1.73
SHKBP1-220ENST00000599716 PAM16Q9Y3D7 125 aa4.24□□□□□ -1.73
SHKBP1-220ENST00000599716 SCGB1A1P11684 91 aa4.23□□□□□ -1.73
SHKBP1-220ENST00000599716 NDUFV3P56181 108 aaKnown RBP4.23□□□□□ -1.73
SHKBP1-220ENST00000599716 TEN1Q86WV5 123 aa4.23□□□□□ -1.73
SHKBP1-220ENST00000599716 A0A1W2PNM2 257 aa4.22□□□□□ -1.73
SHKBP1-220ENST00000599716 LINC00313P59037 77 aa4.22□□□□□ -1.73
SHKBP1-220ENST00000599716 BVES-AS1Q5T3Y7 98 aa4.22□□□□□ -1.73
SHKBP1-220ENST00000599716 PPDPFLQ8WWR9 84 aa4.22□□□□□ -1.73
SHKBP1-220ENST00000599716 RBM12B-AS1Q9P1G2 102 aa4.22□□□□□ -1.73
SHKBP1-220ENST00000599716 IGKV4-1P06312 121 aa4.21□□□□□ -1.74
SHKBP1-220ENST00000599716 HIST1H4GQ99525 98 aa4.21□□□□□ -1.74
SHKBP1-220ENST00000599716 H3BMG7 143 aa4.2□□□□□ -1.74
SHKBP1-220ENST00000599716 GTF2H5Q6ZYL4 71 aa4.2□□□□□ -1.74
SHKBP1-220ENST00000599716 FABP2P12104 132 aa4.19□□□□□ -1.74
SHKBP1-220ENST00000599716 IGHV6-1A0A0B4J1U7 121 aa4.18□□□□□ -1.74
SHKBP1-220ENST00000599716 MTURNQ8N3F0 131 aa4.18□□□□□ -1.74
SHKBP1-220ENST00000599716 Q8N9P0 234 aaPredicted RBP4.17□□□□□ -1.74
SHKBP1-220ENST00000599716 J3QR89 54 aa4.16□□□□□ -1.74
SHKBP1-220ENST00000599716 RAB37Q96AX2 223 aa4.16□□□□□ -1.74
SHKBP1-220ENST00000599716 TAX1BP3O14907 124 aa4.15□□□□□ -1.75
SHKBP1-220ENST00000599716 LINC00472Q9H8W2 130 aa4.14□□□□□ -1.75
SHKBP1-220ENST00000599716 H0YGX0 51 aa4.13□□□□□ -1.75
SHKBP1-220ENST00000599716 COX8AP10176 69 aa4.13□□□□□ -1.75
SHKBP1-220ENST00000599716 KRTAP5-9P26371 169 aa4.13□□□□□ -1.75
SHKBP1-220ENST00000599716 SPINK7P58062 85 aa4.13□□□□□ -1.75
SHKBP1-220ENST00000599716 ANKRD29Q8N6D5 301 aa4.13□□□□□ -1.75
SHKBP1-220ENST00000599716 C9orf118A6NHY6 69 aa4.12□□□□□ -1.75
SHKBP1-220ENST00000599716 K7EP34 96 aa4.12□□□□□ -1.75
SHKBP1-220ENST00000599716 HSD52Q0P140 79 aa4.12□□□□□ -1.75
SHKBP1-220ENST00000599716 A0A0B4J2C4 111 aa4.11□□□□□ -1.75
SHKBP1-220ENST00000599716 TRIAP1O43715 76 aa4.11□□□□□ -1.75
SHKBP1-220ENST00000599716 SNCGO76070 127 aa4.11□□□□□ -1.75
SHKBP1-220ENST00000599716 ZCCHC13Q8WW36 166 aaKnown RBP4.11□□□□□ -1.75
SHKBP1-220ENST00000599716 TRBV7-4A0A0J9YYF1 115 aa4.1□□□□□ -1.75
SHKBP1-220ENST00000599716 CCKP06307 115 aa4.1□□□□□ -1.75
SHKBP1-220ENST00000599716 C2orf91Q6ZV80 131 aa4.1□□□□□ -1.75
SHKBP1-220ENST00000599716 WFDC13Q8IUB5 93 aa4.1□□□□□ -1.75
SHKBP1-220ENST00000599716 KRTAP2-2Q9BYT5 123 aa4.1□□□□□ -1.75
SHKBP1-220ENST00000599716 KRTAP2-1Q9BYU5 128 aa4.1□□□□□ -1.75
SHKBP1-220ENST00000599716 A0A1B0GVX0 72 aa4.09□□□□□ -1.75
SHKBP1-220ENST00000599716 TRACP01848 142 aa4.09□□□□□ -1.75
SHKBP1-220ENST00000599716 A0A1W2PPM0 123 aa4.08□□□□□ -1.76
SHKBP1-220ENST00000599716 A8MWP4 228 aa4.08□□□□□ -1.76
SHKBP1-220ENST00000599716 FXYD2P54710 66 aa4.08□□□□□ -1.76
SHKBP1-220ENST00000599716 A0A1B0GX51 115 aa4.07□□□□□ -1.76
SHKBP1-220ENST00000599716 F8W1H4 67 aa4.07□□□□□ -1.76
SHKBP1-220ENST00000599716 LYRM7Q5U5X0 104 aa4.07□□□□□ -1.76
SHKBP1-220ENST00000599716 HIGD1BQ9P298 99 aa4.07□□□□□ -1.76
SHKBP1-220ENST00000599716 PRO1854Q9UHT4 67 aa4.07□□□□□ -1.76
SHKBP1-220ENST00000599716 SPCS1Q9Y6A9 102 aa4.07□□□□□ -1.76
SHKBP1-220ENST00000599716 K7ERJ3 54 aa4.06□□□□□ -1.76
SHKBP1-220ENST00000599716 CEND1Q8N111 149 aa4.06□□□□□ -1.76
SHKBP1-220ENST00000599716 ORMDL1Q9P0S3 153 aa4.06□□□□□ -1.76
SHKBP1-220ENST00000599716 C8orf87E5RJ46 101 aa4.05□□□□□ -1.76
SHKBP1-220ENST00000599716 H3BS24 57 aa4.05□□□□□ -1.76
SHKBP1-220ENST00000599716 DNAL4O96015 105 aa4.05□□□□□ -1.76
SHKBP1-220ENST00000599716 PSMB2P49721 201 aa4.03□□□□□ -1.76
SHKBP1-220ENST00000599716 TMEM256-PLSCR3K7ERE1 68 aa4.01□□□□□ -1.77
SHKBP1-220ENST00000599716 C8orf17Q9NRJ1 99 aa4□□□□□ -1.77
SHKBP1-220ENST00000599716 DSTQ03001 7570 aaKnown RBP3.99□□□□□ -1.77
SHKBP1-220ENST00000599716 IGKV3D-7A0A0C4DH55 119 aa3.98□□□□□ -1.77
SHKBP1-220ENST00000599716 RBM3P98179 157 aaKnown RBP3.98□□□□□ -1.77
SHKBP1-220ENST00000599716 H1FX-AS1Q4G0G2 97 aa3.98□□□□□ -1.77
SHKBP1-220ENST00000599716 Q6ZQT0 140 aa3.97□□□□□ -1.77
SHKBP1-220ENST00000599716 DSCR8Q96T75 97 aa3.97□□□□□ -1.77
SHKBP1-220ENST00000599716 A6NN06 94 aa3.96□□□□□ -1.78
SHKBP1-220ENST00000599716 J3KT08 172 aa3.96□□□□□ -1.78
SHKBP1-220ENST00000599716 NDUFB1O75438 58 aa3.96□□□□□ -1.78
SHKBP1-220ENST00000599716 Q6ZVQ6 151 aa3.96□□□□□ -1.78
SHKBP1-220ENST00000599716 ANAPC13Q9BS18 74 aa3.96□□□□□ -1.78
SHKBP1-220ENST00000599716 H3BQ85 93 aa3.95□□□□□ -1.78
SHKBP1-220ENST00000599716 MT1BP07438 61 aa3.95□□□□□ -1.78
SHKBP1-220ENST00000599716 COX6CP09669 75 aa3.95□□□□□ -1.78
SHKBP1-220ENST00000599716 ETDBQ3ZM63 59 aa3.95□□□□□ -1.78
SHKBP1-220ENST00000599716 C9JAW5 83 aa3.94□□□□□ -1.78
SHKBP1-220ENST00000599716 PRO0461Q9UI25 63 aa3.94□□□□□ -1.78
SHKBP1-220ENST00000599716 IGKV2D-30A0A075B6S6 120 aa3.93□□□□□ -1.78
SHKBP1-220ENST00000599716 IGKV2-30P06310 120 aa3.93□□□□□ -1.78
SHKBP1-220ENST00000599716 BAALC-AS2P0C853 105 aa3.93□□□□□ -1.78
SHKBP1-220ENST00000599716 SCGB1C2P0DMR2 95 aa3.93□□□□□ -1.78
SHKBP1-220ENST00000599716 NAA38Q9BRA0 125 aaKnown RBP3.93□□□□□ -1.78
SHKBP1-220ENST00000599716 MMP24-AS1A0A0U1RRL7 71 aa3.92□□□□□ -1.78
SHKBP1-220ENST00000599716 NDUFS5O43920 106 aa3.91□□□□□ -1.78
SHKBP1-220ENST00000599716 SPRR2EP22531 72 aa3.91□□□□□ -1.78
SHKBP1-220ENST00000599716 SPRR2BP35325 72 aa3.91□□□□□ -1.78
SHKBP1-220ENST00000599716 SPRR2AP35326 72 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 1230.9 ms