RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 ATP11AUNQ6ZP68 121 aa8.63□□□□□ -1.03
VPS35-210ENST00000568784 Q5W150 140 aa8.62□□□□□ -1.03
VPS35-210ENST00000568784 FBN3Q75N90 2809 aa8.61□□□□□ -1.03
VPS35-210ENST00000568784 IGKV2D-30A0A075B6S6 120 aa8.61□□□□□ -1.03
VPS35-210ENST00000568784 IGKV2-30P06310 120 aa8.61□□□□□ -1.03
VPS35-210ENST00000568784 Q6ZRN7 208 aaPredicted RBP8.61□□□□□ -1.03
VPS35-210ENST00000568784 HUWE1Q7Z6Z7 4374 aaKnown RBP8.6□□□□□ -1.03
VPS35-210ENST00000568784 KTN1-AS1Q86SY8 53 aa8.59□□□□□ -1.03
VPS35-210ENST00000568784 CDC42SE1Q9NRR8 79 aa8.59□□□□□ -1.03
VPS35-210ENST00000568784 C1orf134Q5TEV5 83 aa8.58□□□□□ -1.04
VPS35-210ENST00000568784 Q6ZR54 194 aa8.58□□□□□ -1.04
VPS35-210ENST00000568784 LINC01558Q9Y6Z2 57 aa8.58□□□□□ -1.04
VPS35-210ENST00000568784 ACYP2P14621 99 aa8.57□□□□□ -1.04
VPS35-210ENST00000568784 SPINK1P00995 79 aa8.57□□□□□ -1.04
VPS35-210ENST00000568784 LINC00313P59037 77 aa8.56□□□□□ -1.04
VPS35-210ENST00000568784 IGLV7-43P04211 117 aa8.55□□□□□ -1.04
VPS35-210ENST00000568784 LINC00483Q53H64 154 aa8.54□□□□□ -1.04
VPS35-210ENST00000568784 A0A1B0GU69 56 aa8.53□□□□□ -1.04
VPS35-210ENST00000568784 RBM12B-AS1Q9P1G2 102 aa8.52□□□□□ -1.05
VPS35-210ENST00000568784 MEGF8Q7Z7M0 2845 aa8.5□□□□□ -1.05
VPS35-210ENST00000568784 C4orf48Q5BLP8 95 aa8.5□□□□□ -1.05
VPS35-210ENST00000568784 PLAC8Q9NZF1 115 aa8.49□□□□□ -1.05
VPS35-210ENST00000568784 DNAH9Q9NYC9 4486 aa8.47□□□□□ -1.05
VPS35-210ENST00000568784 ASB16-AS1Q495Z4 193 aa8.47□□□□□ -1.05
VPS35-210ENST00000568784 PRAC1Q96KF2 57 aa8.46□□□□□ -1.05
VPS35-210ENST00000568784 FAM229AH3BQW9 127 aa8.46□□□□□ -1.06
VPS35-210ENST00000568784 C7orf65Q6ZTY9 151 aa8.45□□□□□ -1.06
VPS35-210ENST00000568784 A6NN06 94 aa8.43□□□□□ -1.06
VPS35-210ENST00000568784 C8orf87E5RJ46 101 aa8.43□□□□□ -1.06
VPS35-210ENST00000568784 SSBP3-AS1Q7Z2R9 100 aa8.43□□□□□ -1.06
VPS35-210ENST00000568784 KRTAP10-2P60368 255 aa8.4□□□□□ -1.07
VPS35-210ENST00000568784 CMYA5Q8N3K9 4069 aa8.38□□□□□ -1.07
VPS35-210ENST00000568784 Q8N1X5 172 aa8.37□□□□□ -1.07
VPS35-210ENST00000568784 PLECQ15149 4684 aaKnown RBP8.37□□□□□ -1.07
VPS35-210ENST00000568784 ADM2Q7Z4H4 148 aa8.35□□□□□ -1.07
VPS35-210ENST00000568784 PLA2G1BP04054 148 aaKnown RBP8.34□□□□□ -1.07
VPS35-210ENST00000568784 DNAH1Q9P2D7 4330 aa8.34□□□□□ -1.07
VPS35-210ENST00000568784 DNAH7Q8WXX0 4024 aa8.34□□□□□ -1.07
VPS35-210ENST00000568784 MIR22HGQ0VDD5 57 aa8.34□□□□□ -1.07
VPS35-210ENST00000568784 DMAC1Q96GE9 116 aa8.33□□□□□ -1.08
VPS35-210ENST00000568784 TYMSOSQ8TAI1 123 aa8.32□□□□□ -1.08
VPS35-210ENST00000568784 UQCR11O14957 56 aa8.32□□□□□ -1.08
VPS35-210ENST00000568784 KRTAP13-2Q52LG2 175 aa8.31□□□□□ -1.08
VPS35-210ENST00000568784 FLG2Q5D862 2391 aaPredicted RBP8.28□□□□□ -1.08
VPS35-210ENST00000568784 DMBT1Q9UGM3 2413 aaPredicted RBP8.28□□□□□ -1.08
VPS35-210ENST00000568784 KRTAP10-1P60331 282 aa8.26□□□□□ -1.09
VPS35-210ENST00000568784 KRTAP13-3Q3SY46 172 aa8.26□□□□□ -1.09
VPS35-210ENST00000568784 DNAH3Q8TD57 4116 aa8.26□□□□□ -1.09
VPS35-210ENST00000568784 C9orf92A6NGG3 77 aa8.25□□□□□ -1.09
VPS35-210ENST00000568784 FRAS1Q86XX4 4008 aa8.24□□□□□ -1.09
VPS35-210ENST00000568784 SMR3BP02814 79 aaPredicted RBP8.23□□□□□ -1.09
VPS35-210ENST00000568784 STARD9Q9P2P6 4700 aa8.19□□□□□ -1.1
VPS35-210ENST00000568784 DNAH8Q96JB1 4490 aa8.16□□□□□ -1.1
VPS35-210ENST00000568784 KMT2AQ03164 3969 aa8.16□□□□□ -1.1
VPS35-210ENST00000568784 LINC00304Q8N9R0 145 aa8.13□□□□□ -1.11
VPS35-210ENST00000568784 SPATA8Q6RVD6 105 aa8.13□□□□□ -1.11
VPS35-210ENST00000568784 CSAG1Q6PB30 78 aa8.11□□□□□ -1.11
VPS35-210ENST00000568784 KRTAP16-1A8MUX0 517 aa8.1□□□□□ -1.11
VPS35-210ENST00000568784 KRTAP1-4P0C5Y4 121 aa8.07□□□□□ -1.12
VPS35-210ENST00000568784 LINC01554Q52M75 96 aa8.07□□□□□ -1.12
VPS35-210ENST00000568784 DNAH11Q96DT5 4516 aa8.07□□□□□ -1.12
VPS35-210ENST00000568784 PRKDCP78527 4128 aaKnown RBP8.06□□□□□ -1.12
VPS35-210ENST00000568784 DNAH17Q9UFH2 4485 aa8.05□□□□□ -1.12
VPS35-210ENST00000568784 CRIPTQ9P021 101 aa8.01□□□□□ -1.13
VPS35-210ENST00000568784 VPS13DQ5THJ4 4388 aa8.01□□□□□ -1.13
VPS35-210ENST00000568784 HECTD4Q9Y4D8 3996 aa8□□□□□ -1.13
VPS35-210ENST00000568784 DNAH2Q9P225 4427 aa7.97□□□□□ -1.13
VPS35-210ENST00000568784 DNAH6Q9C0G6 4158 aa7.97□□□□□ -1.13
VPS35-210ENST00000568784 A0A1B0GU33 70 aa7.96□□□□□ -1.13
VPS35-210ENST00000568784 Q6ZSA8 131 aa7.96□□□□□ -1.13
VPS35-210ENST00000568784 LRP1BQ9NZR2 4599 aa7.94□□□□□ -1.14
VPS35-210ENST00000568784 K7ERS5 55 aa7.93□□□□□ -1.14
VPS35-210ENST00000568784 A0A0D9SG42 100 aa7.87□□□□□ -1.15
VPS35-210ENST00000568784 H0YAA0 97 aa7.87□□□□□ -1.15
VPS35-210ENST00000568784 DYNC2H1Q8NCM8 4307 aaKnown RBP7.85□□□□□ -1.15
VPS35-210ENST00000568784 H1FX-AS1Q4G0G2 97 aa7.82□□□□□ -1.16
VPS35-210ENST00000568784 DNHD1Q96M86 4753 aa7.81□□□□□ -1.16
VPS35-210ENST00000568784 H3BS24 57 aa7.81□□□□□ -1.16
VPS35-210ENST00000568784 DNAH5Q8TE73 4624 aa7.79□□□□□ -1.16
VPS35-210ENST00000568784 ALMS1Q8TCU4 4167 aa7.77□□□□□ -1.16
VPS35-210ENST00000568784 KRTAP3-1Q9BYR8 98 aa7.75□□□□□ -1.17
VPS35-210ENST00000568784 VPS13BQ7Z7G8 4022 aa7.75□□□□□ -1.17
VPS35-210ENST00000568784 A8MUU9 505 aa7.74□□□□□ -1.17
VPS35-210ENST00000568784 C20orf166-AS1Q96NR2 134 aa7.72□□□□□ -1.17
VPS35-210ENST00000568784 COX6B2Q6YFQ2 88 aa7.71□□□□□ -1.18
VPS35-210ENST00000568784 KRTAP25-1Q3LHN0 102 aa7.69□□□□□ -1.18
VPS35-210ENST00000568784 FAT1Q14517 4588 aa7.68□□□□□ -1.18
VPS35-210ENST00000568784 RPS29P62273 56 aaKnown RBP7.66□□□□□ -1.18
VPS35-210ENST00000568784 HYDINQ4G0P3 5121 aa7.65□□□□□ -1.19
VPS35-210ENST00000568784 SPINT4Q6UDR6 99 aa7.62□□□□□ -1.19
VPS35-210ENST00000568784 RPL37P61927 97 aaKnown RBP7.58□□□□□ -1.2
VPS35-210ENST00000568784 PKHD1P08F94 4074 aa7.57□□□□□ -1.2
VPS35-210ENST00000568784 ROMO1P60602 79 aa7.55□□□□□ -1.2
VPS35-210ENST00000568784 FAT2Q9NYQ8 4349 aa7.54□□□□□ -1.2
VPS35-210ENST00000568784 S4R3F8 94 aa7.54□□□□□ -1.2
VPS35-210ENST00000568784 C10orf95Q9H7T3 257 aa7.5□□□□□ -1.21
VPS35-210ENST00000568784 DYNC1H1Q14204 4646 aaKnown RBP7.48□□□□□ -1.21
VPS35-210ENST00000568784 MYCBP2O75592 4640 aa7.47□□□□□ -1.21
VPS35-210ENST00000568784 Q5VSD8 79 aa7.46□□□□□ -1.21
VPS35-210ENST00000568784 P0C880 135 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms