RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-222ENST00000560435 DDX60LQ5H9U9 1706 aaKnown RBP-0.47□□□□□ -2.48
SPG11-222ENST00000560435 MRPL33O75394 65 aaKnown RBP-0.47□□□□□ -2.48
SPG11-222ENST00000560435 DEFB1P60022 68 aa-0.47□□□□□ -2.48
SPG11-222ENST00000560435 WT1-ASQ06250 92 aa-0.47□□□□□ -2.48
SPG11-222ENST00000560435 DEFB106AQ8N104 65 aa-0.47□□□□□ -2.48
SPG11-222ENST00000560435 DNAH8Q96JB1 4490 aa-0.47□□□□□ -2.48
SPG11-222ENST00000560435 CELSR3Q9NYQ7 3312 aa-0.47□□□□□ -2.48
SPG11-222ENST00000560435 CD163L1Q9NR16 1453 aa-0.48□□□□□ -2.49
SPG11-222ENST00000560435 PLECQ15149 4684 aaKnown RBP-0.48□□□□□ -2.49
SPG11-222ENST00000560435 THOC2Q8NI27 1593 aaKnown RBP-0.48□□□□□ -2.49
SPG11-222ENST00000560435 SRCAPQ6ZRS2 3230 aa-0.48□□□□□ -2.49
SPG11-222ENST00000560435 RNF17Q9BXT8 1623 aaKnown RBP-0.48□□□□□ -2.49
SPG11-222ENST00000560435 PLCH1Q4KWH8 1693 aa-0.48□□□□□ -2.49
SPG11-222ENST00000560435 ZC3H13Q5T200 1668 aaKnown RBP-0.48□□□□□ -2.49
SPG11-222ENST00000560435 A0A087WXM4 84 aa-0.48□□□□□ -2.49
SPG11-222ENST00000560435 SMR3BP02814 79 aaPredicted RBP-0.48□□□□□ -2.49
SPG11-222ENST00000560435 SMIM13P0DJ93 91 aa-0.48□□□□□ -2.49
SPG11-222ENST00000560435 KRTAP8-1Q8IUC2 63 aa-0.48□□□□□ -2.49
SPG11-222ENST00000560435 TJP1Q07157 1748 aa-0.48□□□□□ -2.49
SPG11-222ENST00000560435 MED14O60244 1454 aa-0.48□□□□□ -2.49
SPG11-222ENST00000560435 SPTBN5Q9NRC6 3674 aaKnown RBP-0.49□□□□□ -2.49
SPG11-222ENST00000560435 ITSN1Q15811 1721 aa-0.49□□□□□ -2.49
SPG11-222ENST00000560435 RYR3Q15413 4870 aa-0.49□□□□□ -2.49
SPG11-222ENST00000560435 ADGRG4Q8IZF6 3080 aa-0.49□□□□□ -2.49
SPG11-222ENST00000560435 IGLV5-48A0A075B6I7 105 aa-0.49□□□□□ -2.49
SPG11-222ENST00000560435 MMP24-AS1A0A0U1RRL7 71 aa-0.49□□□□□ -2.49
SPG11-222ENST00000560435 H3BUT2 72 aa-0.49□□□□□ -2.49
SPG11-222ENST00000560435 RPS27P42677 84 aaKnown RBP-0.49□□□□□ -2.49
SPG11-222ENST00000560435 MT1XP80297 61 aa-0.49□□□□□ -2.49
SPG11-222ENST00000560435 ADIRFQ15847 76 aa-0.49□□□□□ -2.49
SPG11-222ENST00000560435 BVES-AS1Q5T3Y7 98 aa-0.49□□□□□ -2.49
SPG11-222ENST00000560435 RPS27LQ71UM5 84 aaKnown RBP-0.49□□□□□ -2.49
SPG11-222ENST00000560435 S100A13Q99584 98 aa-0.49□□□□□ -2.49
SPG11-222ENST00000560435 CEP295Q9C0D2 2601 aa-0.49□□□□□ -2.49
SPG11-222ENST00000560435 DYNC2H1Q8NCM8 4307 aaKnown RBP-0.49□□□□□ -2.49
SPG11-222ENST00000560435 ARHGAP35Q9NRY4 1499 aa-0.49□□□□□ -2.49
SPG11-222ENST00000560435 CFAP43Q8NDM7 1665 aa-0.49□□□□□ -2.49
SPG11-222ENST00000560435 ITSN2Q9NZM3 1697 aa-0.49□□□□□ -2.49
SPG11-222ENST00000560435 RICTORQ6R327 1708 aa-0.5□□□□□ -2.49
SPG11-222ENST00000560435 RYR2Q92736 4967 aa-0.5□□□□□ -2.49
SPG11-222ENST00000560435 CSMD1Q96PZ7 3565 aa-0.5□□□□□ -2.49
SPG11-222ENST00000560435 GNG2P59768 71 aa-0.5□□□□□ -2.49
SPG11-222ENST00000560435 UBL5Q9BZL1 73 aa-0.5□□□□□ -2.49
SPG11-222ENST00000560435 TIMM8BQ9Y5J9 83 aaPredicted RBP-0.5□□□□□ -2.49
SPG11-222ENST00000560435 CMYA5Q8N3K9 4069 aa-0.5□□□□□ -2.49
SPG11-222ENST00000560435 RALGAPBQ86X10 1494 aa-0.5□□□□□ -2.49
SPG11-222ENST00000560435 ABCC1P33527 1531 aa-0.5□□□□□ -2.49
SPG11-222ENST00000560435 KIAA0586Q9BVV6 1533 aa-0.5□□□□□ -2.49
SPG11-222ENST00000560435 KDM5DQ9BY66 1539 aa-0.5□□□□□ -2.49
SPG11-222ENST00000560435 INO80Q9ULG1 1556 aaPredicted RBP-0.5□□□□□ -2.49
SPG11-222ENST00000560435 DNHD1Q96M86 4753 aa-0.5□□□□□ -2.49
SPG11-222ENST00000560435 TOGARAM1Q9Y4F4 1720 aa-0.5□□□□□ -2.49
SPG11-222ENST00000560435 RNF213Q63HN8 5207 aa-0.51□□□□□ -2.49
SPG11-222ENST00000560435 ETDCA0A1B0GVM5 59 aa-0.51□□□□□ -2.49
SPG11-222ENST00000560435 HFM1A2PYH4 1435 aa-0.51□□□□□ -2.49
SPG11-222ENST00000560435 MT1EP04732 61 aa-0.51□□□□□ -2.49
SPG11-222ENST00000560435 TNP1P09430 55 aa-0.51□□□□□ -2.49
SPG11-222ENST00000560435 ERVK-7P63135 1459 aa-0.51□□□□□ -2.49
SPG11-222ENST00000560435 ANKRD36CQ5JPF3 1778 aa-0.51□□□□□ -2.49
SPG11-222ENST00000560435 CLPSL2Q6UWE3 100 aa-0.51□□□□□ -2.49
SPG11-222ENST00000560435 NRAPQ86VF7 1730 aa-0.51□□□□□ -2.49
SPG11-222ENST00000560435 CFAP46Q8IYW2 2715 aa-0.51□□□□□ -2.49
SPG11-222ENST00000560435 C18orf32Q8TCD1 76 aa-0.51□□□□□ -2.49
SPG11-222ENST00000560435 DYNC1H1Q14204 4646 aaKnown RBP-0.51□□□□□ -2.49
SPG11-222ENST00000560435 MYO9AB2RTY4 2548 aa-0.52□□□□□ -2.49
SPG11-222ENST00000560435 EIF2AK4Q9P2K8 1649 aaKnown RBP-0.52□□□□□ -2.49
SPG11-222ENST00000560435 CFAP74Q9C0B2 1584 aa-0.52□□□□□ -2.49
SPG11-222ENST00000560435 DCAF1Q9Y4B6 1507 aa-0.52□□□□□ -2.49
SPG11-222ENST00000560435 MGAQ8IWI9 3026 aa-0.52□□□□□ -2.49
SPG11-222ENST00000560435 DEFB114Q30KQ6 69 aa-0.52□□□□□ -2.49
SPG11-222ENST00000560435 ENHOQ6UWT2 76 aa-0.52□□□□□ -2.49
SPG11-222ENST00000560435 COL6A5A8TX70 2615 aa-0.52□□□□□ -2.49
SPG11-222ENST00000560435 PARP4Q9UKK3 1724 aaKnown RBP-0.52□□□□□ -2.49
SPG11-222ENST00000560435 KIF1AQ12756 1690 aa-0.53□□□□□ -2.49
SPG11-222ENST00000560435 EYSQ5T1H1 3165 aa-0.53□□□□□ -2.49
SPG11-222ENST00000560435 H3BUA1 57 aa-0.53□□□□□ -2.49
SPG11-222ENST00000560435 MINOS1Q5TGZ0 78 aa-0.53□□□□□ -2.49
SPG11-222ENST00000560435 MT1LQ93083 61 aa-0.53□□□□□ -2.49
SPG11-222ENST00000560435 SPTAN1Q13813 2472 aaKnown RBP-0.53□□□□□ -2.49
SPG11-222ENST00000560435 DIP2AQ14689 1571 aa-0.53□□□□□ -2.49
SPG11-222ENST00000560435 ANKARQ7Z5J8 1434 aa-0.54□□□□□ -2.5
SPG11-222ENST00000560435 CDC42BPAQ5VT25 1732 aa-0.54□□□□□ -2.5
SPG11-222ENST00000560435 LRRIQ1Q96JM4 1722 aa-0.54□□□□□ -2.5
SPG11-222ENST00000560435 NCBP2-AS2Q69YL0 99 aa-0.54□□□□□ -2.5
SPG11-222ENST00000560435 NOP10Q9NPE3 64 aaKnown RBP-0.54□□□□□ -2.5
SPG11-222ENST00000560435 C6orf48Q9UBA6 75 aa-0.54□□□□□ -2.5
SPG11-222ENST00000560435 NHSQ6T4R5 1651 aa-0.54□□□□□ -2.5
SPG11-222ENST00000560435 RB1CC1Q8TDY2 1594 aa-0.54□□□□□ -2.5
SPG11-222ENST00000560435 ITPR2Q14571 2701 aa-0.54□□□□□ -2.5
SPG11-222ENST00000560435 LMTK2Q8IWU2 1503 aa-0.54□□□□□ -2.5
SPG11-222ENST00000560435 CCDC18Q5T9S5 1454 aa-0.54□□□□□ -2.5
SPG11-222ENST00000560435 DNAH7Q8WXX0 4024 aa-0.54□□□□□ -2.5
SPG11-222ENST00000560435 MT1HL1P0DM35 61 aa-0.55□□□□□ -2.5
SPG11-222ENST00000560435 MAST1Q9Y2H9 1570 aa-0.55□□□□□ -2.5
SPG11-222ENST00000560435 ASXL1Q8IXJ9 1541 aa-0.55□□□□□ -2.5
SPG11-222ENST00000560435 LY75O60449 1722 aa-0.55□□□□□ -2.5
SPG11-222ENST00000560435 DNAH17Q9UFH2 4485 aa-0.56□□□□□ -2.5
SPG11-222ENST00000560435 ABCA8O94911 1581 aa-0.56□□□□□ -2.5
SPG11-222ENST00000560435 H3BVH4 76 aa-0.56□□□□□ -2.5
SPG11-222ENST00000560435 ABCC6O95255 1503 aa-0.56□□□□□ -2.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms