RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 IGKV2D-30A0A075B6S6 120 aa6.76□□□□□ -1.33
LDLR-208ENST00000558518 IGKV2-30P06310 120 aa6.76□□□□□ -1.33
LDLR-208ENST00000558518 APLNQ9ULZ1 77 aa6.76□□□□□ -1.33
LDLR-208ENST00000558518 FLG2Q5D862 2391 aaPredicted RBP6.75□□□□□ -1.33
LDLR-208ENST00000558518 A0A1B0GU69 56 aa6.75□□□□□ -1.33
LDLR-208ENST00000558518 DNAH9Q9NYC9 4486 aa6.74□□□□□ -1.33
LDLR-208ENST00000558518 LINC00313P59037 77 aa6.74□□□□□ -1.33
LDLR-208ENST00000558518 WWC2-AS2Q96NR7 200 aa6.73□□□□□ -1.33
LDLR-208ENST00000558518 RTL8CO15255 209 aa6.72□□□□□ -1.33
LDLR-208ENST00000558518 ACYP2P14621 99 aa6.72□□□□□ -1.33
LDLR-208ENST00000558518 ZNF706Q9Y5V0 76 aaPredicted RBP6.72□□□□□ -1.33
LDLR-208ENST00000558518 HUWE1Q7Z6Z7 4374 aaKnown RBP6.72□□□□□ -1.33
LDLR-208ENST00000558518 Q6ZR54 194 aa6.71□□□□□ -1.33
LDLR-208ENST00000558518 DMBT1Q9UGM3 2413 aaPredicted RBP6.7□□□□□ -1.34
LDLR-208ENST00000558518 MEGF8Q7Z7M0 2845 aa6.7□□□□□ -1.34
LDLR-208ENST00000558518 DNAH1Q9P2D7 4330 aa6.69□□□□□ -1.34
LDLR-208ENST00000558518 SPACA4Q8TDM5 124 aa6.69□□□□□ -1.34
LDLR-208ENST00000558518 ZNF861PO60384 105 aa6.69□□□□□ -1.34
LDLR-208ENST00000558518 KRTAP13-1Q8IUC0 172 aa6.69□□□□□ -1.34
LDLR-208ENST00000558518 IGLV5-52A0A0A0MRZ9 124 aa6.68□□□□□ -1.34
LDLR-208ENST00000558518 A0A087WTM6 91 aa6.67□□□□□ -1.34
LDLR-208ENST00000558518 DNAH7Q8WXX0 4024 aa6.67□□□□□ -1.34
LDLR-208ENST00000558518 FRAS1Q86XX4 4008 aa6.65□□□□□ -1.35
LDLR-208ENST00000558518 CMYA5Q8N3K9 4069 aa6.64□□□□□ -1.35
LDLR-208ENST00000558518 LY6G6CO95867 125 aa6.62□□□□□ -1.35
LDLR-208ENST00000558518 MIR22HGQ0VDD5 57 aa6.62□□□□□ -1.35
LDLR-208ENST00000558518 Q8N1X5 172 aa6.61□□□□□ -1.35
LDLR-208ENST00000558518 ASB16-AS1Q495Z4 193 aa6.61□□□□□ -1.35
LDLR-208ENST00000558518 Q6ZRN7 208 aaPredicted RBP6.6□□□□□ -1.35
LDLR-208ENST00000558518 PLAC8Q9NZF1 115 aa6.59□□□□□ -1.35
LDLR-208ENST00000558518 IGLV7-43P04211 117 aa6.59□□□□□ -1.35
LDLR-208ENST00000558518 LINC00483Q53H64 154 aa6.59□□□□□ -1.35
LDLR-208ENST00000558518 NUPR2A6NF83 97 aa6.58□□□□□ -1.36
LDLR-208ENST00000558518 C8orf87E5RJ46 101 aa6.58□□□□□ -1.36
LDLR-208ENST00000558518 UQCR11O14957 56 aa6.57□□□□□ -1.36
LDLR-208ENST00000558518 PLECQ15149 4684 aaKnown RBP6.57□□□□□ -1.36
LDLR-208ENST00000558518 FAM229AH3BQW9 127 aa6.56□□□□□ -1.36
LDLR-208ENST00000558518 CSAG1Q6PB30 78 aa6.55□□□□□ -1.36
LDLR-208ENST00000558518 C1orf134Q5TEV5 83 aa6.54□□□□□ -1.36
LDLR-208ENST00000558518 DMAC1Q96GE9 116 aa6.53□□□□□ -1.36
LDLR-208ENST00000558518 C4orf48Q5BLP8 95 aa6.53□□□□□ -1.36
LDLR-208ENST00000558518 LINC01554Q52M75 96 aa6.51□□□□□ -1.37
LDLR-208ENST00000558518 DNAH3Q8TD57 4116 aa6.51□□□□□ -1.37
LDLR-208ENST00000558518 CRIPTQ9P021 101 aa6.51□□□□□ -1.37
LDLR-208ENST00000558518 DNAH8Q96JB1 4490 aa6.48□□□□□ -1.37
LDLR-208ENST00000558518 KRTAP13-3Q3SY46 172 aa6.48□□□□□ -1.37
LDLR-208ENST00000558518 KRTAP10-2P60368 255 aa6.47□□□□□ -1.37
LDLR-208ENST00000558518 KMT2AQ03164 3969 aa6.47□□□□□ -1.37
LDLR-208ENST00000558518 SSBP3-AS1Q7Z2R9 100 aa6.46□□□□□ -1.37
LDLR-208ENST00000558518 C9orf92A6NGG3 77 aa6.45□□□□□ -1.38
LDLR-208ENST00000558518 KRTAP13-2Q52LG2 175 aa6.44□□□□□ -1.38
LDLR-208ENST00000558518 SPATA8Q6RVD6 105 aa6.44□□□□□ -1.38
LDLR-208ENST00000558518 PLA2G1BP04054 148 aaKnown RBP6.44□□□□□ -1.38
LDLR-208ENST00000558518 H3BS24 57 aa6.43□□□□□ -1.38
LDLR-208ENST00000558518 STARD9Q9P2P6 4700 aa6.42□□□□□ -1.38
LDLR-208ENST00000558518 TYMSOSQ8TAI1 123 aa6.41□□□□□ -1.38
LDLR-208ENST00000558518 DNAH17Q9UFH2 4485 aa6.39□□□□□ -1.39
LDLR-208ENST00000558518 SMR3BP02814 79 aaPredicted RBP6.37□□□□□ -1.39
LDLR-208ENST00000558518 DNAH11Q96DT5 4516 aa6.35□□□□□ -1.39
LDLR-208ENST00000558518 KRTAP10-1P60331 282 aa6.35□□□□□ -1.39
LDLR-208ENST00000558518 DNAH6Q9C0G6 4158 aa6.35□□□□□ -1.39
LDLR-208ENST00000558518 HECTD4Q9Y4D8 3996 aa6.34□□□□□ -1.39
LDLR-208ENST00000558518 KRTAP16-1A8MUX0 517 aa6.31□□□□□ -1.4
LDLR-208ENST00000558518 PRKDCP78527 4128 aaKnown RBP6.31□□□□□ -1.4
LDLR-208ENST00000558518 ALMS1Q8TCU4 4167 aa6.29□□□□□ -1.4
LDLR-208ENST00000558518 DNAH2Q9P225 4427 aa6.29□□□□□ -1.4
LDLR-208ENST00000558518 VPS13DQ5THJ4 4388 aa6.28□□□□□ -1.4
LDLR-208ENST00000558518 A0A1B0GU33 70 aa6.27□□□□□ -1.4
LDLR-208ENST00000558518 Q6ZSA8 131 aa6.27□□□□□ -1.41
LDLR-208ENST00000558518 A0A0D9SG42 100 aa6.26□□□□□ -1.41
LDLR-208ENST00000558518 H0YAA0 97 aa6.26□□□□□ -1.41
LDLR-208ENST00000558518 LINC00304Q8N9R0 145 aa6.25□□□□□ -1.41
LDLR-208ENST00000558518 LRP1BQ9NZR2 4599 aa6.25□□□□□ -1.41
LDLR-208ENST00000558518 KRTAP1-4P0C5Y4 121 aa6.23□□□□□ -1.41
LDLR-208ENST00000558518 DYNC2H1Q8NCM8 4307 aaKnown RBP6.22□□□□□ -1.41
LDLR-208ENST00000558518 K7ERS5 55 aa6.21□□□□□ -1.42
LDLR-208ENST00000558518 DNHD1Q96M86 4753 aa6.16□□□□□ -1.42
LDLR-208ENST00000558518 KRTAP25-1Q3LHN0 102 aa6.16□□□□□ -1.42
LDLR-208ENST00000558518 H1FX-AS1Q4G0G2 97 aa6.16□□□□□ -1.42
LDLR-208ENST00000558518 A8MUU9 505 aa6.15□□□□□ -1.43
LDLR-208ENST00000558518 VPS13BQ7Z7G8 4022 aa6.14□□□□□ -1.43
LDLR-208ENST00000558518 SPINT4Q6UDR6 99 aa6.12□□□□□ -1.43
LDLR-208ENST00000558518 DNAH5Q8TE73 4624 aa6.11□□□□□ -1.43
LDLR-208ENST00000558518 KRTAP3-1Q9BYR8 98 aa6.1□□□□□ -1.43
LDLR-208ENST00000558518 ROMO1P60602 79 aa6.09□□□□□ -1.43
LDLR-208ENST00000558518 COX6B2Q6YFQ2 88 aa6.09□□□□□ -1.43
LDLR-208ENST00000558518 FAT2Q9NYQ8 4349 aa6.05□□□□□ -1.44
LDLR-208ENST00000558518 C10orf95Q9H7T3 257 aa6.05□□□□□ -1.44
LDLR-208ENST00000558518 HYDINQ4G0P3 5121 aa6.04□□□□□ -1.44
LDLR-208ENST00000558518 FAT1Q14517 4588 aa6.03□□□□□ -1.44
LDLR-208ENST00000558518 PKHD1P08F94 4074 aa6□□□□□ -1.45
LDLR-208ENST00000558518 RPL37P61927 97 aaKnown RBP5.96□□□□□ -1.46
LDLR-208ENST00000558518 MYCBP2O75592 4640 aa5.95□□□□□ -1.46
LDLR-208ENST00000558518 C20orf166-AS1Q96NR2 134 aa5.95□□□□□ -1.46
LDLR-208ENST00000558518 P0C880 135 aa5.92□□□□□ -1.46
LDLR-208ENST00000558518 KRTAP13-4Q3LI77 160 aa5.92□□□□□ -1.46
LDLR-208ENST00000558518 NDUFAF8A1L188 74 aa5.88□□□□□ -1.47
LDLR-208ENST00000558518 TPRXLQ17RH7 258 aa5.88□□□□□ -1.47
LDLR-208ENST00000558518 PKD1P98161 4303 aa5.87□□□□□ -1.47
LDLR-208ENST00000558518 S4R3F8 94 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms