RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 DNAH2Q9P225 4427 aa-0.47□□□□□ -2.48
SCFD1-217ENST00000555953 HIVEP1P15822 2718 aa-0.47□□□□□ -2.49
SCFD1-217ENST00000555953 TRIOO75962 3097 aa-0.47□□□□□ -2.49
SCFD1-217ENST00000555953 TEP1Q99973 2627 aaKnown RBP-0.48□□□□□ -2.49
SCFD1-217ENST00000555953 DUOX2Q9NRD8 1548 aa-0.48□□□□□ -2.49
SCFD1-217ENST00000555953 C9orf92A6NGG3 77 aa-0.48□□□□□ -2.49
SCFD1-217ENST00000555953 SFTA3P0C7M3 94 aa-0.48□□□□□ -2.49
SCFD1-217ENST00000555953 WT1-ASQ06250 92 aa-0.48□□□□□ -2.49
SCFD1-217ENST00000555953 KIAA0586Q9BVV6 1533 aa-0.48□□□□□ -2.49
SCFD1-217ENST00000555953 ANKRD11Q6UB99 2663 aaPredicted RBP-0.49□□□□□ -2.49
SCFD1-217ENST00000555953 PDCD5O14737 125 aa-0.49□□□□□ -2.49
SCFD1-217ENST00000555953 MRPL33O75394 65 aaKnown RBP-0.49□□□□□ -2.49
SCFD1-217ENST00000555953 MINOS1Q5TGZ0 78 aa-0.49□□□□□ -2.49
SCFD1-217ENST00000555953 GNG13Q9P2W3 67 aa-0.49□□□□□ -2.49
SCFD1-217ENST00000555953 RANBP2P49792 3224 aaKnown RBP-0.49□□□□□ -2.49
SCFD1-217ENST00000555953 ABCC6O95255 1503 aa-0.49□□□□□ -2.49
SCFD1-217ENST00000555953 LAMA1P25391 3075 aa-0.49□□□□□ -2.49
SCFD1-217ENST00000555953 INO80Q9ULG1 1556 aaPredicted RBP-0.49□□□□□ -2.49
SCFD1-217ENST00000555953 SCRIBQ14160 1630 aa-0.49□□□□□ -2.49
SCFD1-217ENST00000555953 WDR87Q6ZQQ6 2873 aa-0.5□□□□□ -2.49
SCFD1-217ENST00000555953 NHSQ6T4R5 1651 aa-0.5□□□□□ -2.49
SCFD1-217ENST00000555953 ANKRD36CQ5JPF3 1778 aa-0.5□□□□□ -2.49
SCFD1-217ENST00000555953 ANKHD1Q8IWZ3 2542 aaKnown RBP-0.5□□□□□ -2.49
SCFD1-217ENST00000555953 LINC01549A6NIU2 74 aa-0.51□□□□□ -2.49
SCFD1-217ENST00000555953 K7EMI3 77 aa-0.51□□□□□ -2.49
SCFD1-217ENST00000555953 DEFB110Q30KQ9 67 aa-0.51□□□□□ -2.49
SCFD1-217ENST00000555953 SPG11Q96JI7 2443 aa-0.51□□□□□ -2.49
SCFD1-217ENST00000555953 EPG5Q9HCE0 2579 aa-0.51□□□□□ -2.49
SCFD1-217ENST00000555953 FCER1GP30273 86 aa-0.52□□□□□ -2.49
SCFD1-217ENST00000555953 MT4P47944 62 aa-0.52□□□□□ -2.49
SCFD1-217ENST00000555953 PKD1L2Q7Z442 2459 aa-0.52□□□□□ -2.49
SCFD1-217ENST00000555953 KIF1AQ12756 1690 aa-0.53□□□□□ -2.49
SCFD1-217ENST00000555953 DNMBPQ6XZF7 1577 aa-0.53□□□□□ -2.49
SCFD1-217ENST00000555953 DNAH1Q9P2D7 4330 aa-0.53□□□□□ -2.49
SCFD1-217ENST00000555953 UTP20O75691 2785 aaKnown RBP-0.53□□□□□ -2.49
SCFD1-217ENST00000555953 C6orf48Q9UBA6 75 aa-0.53□□□□□ -2.49
SCFD1-217ENST00000555953 HERC2O95714 4834 aa-0.53□□□□□ -2.49
SCFD1-217ENST00000555953 TOGARAM1Q9Y4F4 1720 aa-0.53□□□□□ -2.49
SCFD1-217ENST00000555953 MYO18BQ8IUG5 2567 aa-0.53□□□□□ -2.5
SCFD1-217ENST00000555953 CEP290O15078 2479 aa-0.54□□□□□ -2.5
SCFD1-217ENST00000555953 DNAH8Q96JB1 4490 aa-0.54□□□□□ -2.5
SCFD1-217ENST00000555953 KRTAP19-5Q3LI72 72 aa-0.54□□□□□ -2.5
SCFD1-217ENST00000555953 NBEAL2Q6ZNJ1 2754 aa-0.55□□□□□ -2.5
SCFD1-217ENST00000555953 C3P01024 1663 aa-0.55□□□□□ -2.5
SCFD1-217ENST00000555953 IGLV5-48A0A075B6I7 105 aa-0.55□□□□□ -2.5
SCFD1-217ENST00000555953 DEFB114Q30KQ6 69 aa-0.55□□□□□ -2.5
SCFD1-217ENST00000555953 GLI2P10070 1586 aa-0.55□□□□□ -2.5
SCFD1-217ENST00000555953 THOC2Q8NI27 1593 aaKnown RBP-0.55□□□□□ -2.5
SCFD1-217ENST00000555953 ITPR3Q14573 2671 aa-0.55□□□□□ -2.5
SCFD1-217ENST00000555953 SPENQ96T58 3664 aaKnown RBP-0.56□□□□□ -2.5
SCFD1-217ENST00000555953 EPPK1P58107 5090 aaKnown RBP-0.56□□□□□ -2.5
SCFD1-217ENST00000555953 M0R1W7 72 aa-0.56□□□□□ -2.5
SCFD1-217ENST00000555953 MTORP42345 2549 aa-0.56□□□□□ -2.5
SCFD1-217ENST00000555953 NBEAQ8NFP9 2946 aa-0.57□□□□□ -2.5
SCFD1-217ENST00000555953 PLECQ15149 4684 aaKnown RBP-0.58□□□□□ -2.5
SCFD1-217ENST00000555953 BPTFQ12830 3046 aa-0.58□□□□□ -2.5
SCFD1-217ENST00000555953 USP9YO00507 2555 aaPredicted RBP-0.58□□□□□ -2.5
SCFD1-217ENST00000555953 MGAM2Q2M2H8 2515 aa-0.59□□□□□ -2.5
SCFD1-217ENST00000555953 LRRK2Q5S007 2527 aa-0.59□□□□□ -2.5
SCFD1-217ENST00000555953 ABCA6Q8N139 1617 aa-0.59□□□□□ -2.5
SCFD1-217ENST00000555953 ACACBO00763 2458 aa-0.59□□□□□ -2.5
SCFD1-217ENST00000555953 DYNC2H1Q8NCM8 4307 aaKnown RBP-0.59□□□□□ -2.5
SCFD1-217ENST00000555953 A0A0C4DFX4 3053 aa-0.59□□□□□ -2.5
SCFD1-217ENST00000555953 CLASP1Q7Z460 1538 aa-0.59□□□□□ -2.5
SCFD1-217ENST00000555953 MROH1Q8NDA8 1641 aa-0.6□□□□□ -2.5
SCFD1-217ENST00000555953 TIMM8BQ9Y5J9 83 aaPredicted RBP-0.6□□□□□ -2.51
SCFD1-217ENST00000555953 SPTBN5Q9NRC6 3674 aaKnown RBP-0.6□□□□□ -2.51
SCFD1-217ENST00000555953 EFCAB5A4FU69 1503 aa-0.6□□□□□ -2.51
SCFD1-217ENST00000555953 SMR3BP02814 79 aaPredicted RBP-0.61□□□□□ -2.51
SCFD1-217ENST00000555953 RELNP78509 3460 aa-0.61□□□□□ -2.51
SCFD1-217ENST00000555953 LAMA3Q16787 3333 aa-0.62□□□□□ -2.51
SCFD1-217ENST00000555953 LY75O60449 1722 aa-0.62□□□□□ -2.51
SCFD1-217ENST00000555953 CROCC2H7BZ55 1655 aa-0.62□□□□□ -2.51
SCFD1-217ENST00000555953 RYR1P21817 5038 aa-0.63□□□□□ -2.51
SCFD1-217ENST00000555953 MMP24-AS1A0A0U1RRL7 71 aa-0.63□□□□□ -2.51
SCFD1-217ENST00000555953 IGIPA6NJ69 53 aa-0.63□□□□□ -2.51
SCFD1-217ENST00000555953 CCDC168Q8NDH2 2452 aa-0.63□□□□□ -2.51
SCFD1-217ENST00000555953 EEA1Q15075 1411 aa-0.64□□□□□ -2.51
SCFD1-217ENST00000555953 TIAM1Q13009 1591 aa-0.64□□□□□ -2.51
SCFD1-217ENST00000555953 KAAG1Q9UBP8 84 aa-0.64□□□□□ -2.51
SCFD1-217ENST00000555953 CMYA5Q8N3K9 4069 aa-0.64□□□□□ -2.51
SCFD1-217ENST00000555953 BIRC6Q9NR09 4857 aa-0.64□□□□□ -2.51
SCFD1-217ENST00000555953 MAST1Q9Y2H9 1570 aa-0.65□□□□□ -2.51
SCFD1-217ENST00000555953 A0A087WWC5 75 aa-0.65□□□□□ -2.51
SCFD1-217ENST00000555953 H3BUA1 57 aa-0.65□□□□□ -2.51
SCFD1-217ENST00000555953 DEFB1P60022 68 aa-0.65□□□□□ -2.51
SCFD1-217ENST00000555953 LINC00308Q8TCZ7 52 aa-0.65□□□□□ -2.51
SCFD1-217ENST00000555953 CDC42BPAQ5VT25 1732 aa-0.65□□□□□ -2.51
SCFD1-217ENST00000555953 ACACAQ13085 2346 aa-0.65□□□□□ -2.51
SCFD1-217ENST00000555953 UGGT1Q9NYU2 1555 aa-0.66□□□□□ -2.51
SCFD1-217ENST00000555953 CCDC180Q9P1Z9 1646 aa-0.66□□□□□ -2.51
SCFD1-217ENST00000555953 TNP1P09430 55 aa-0.66□□□□□ -2.52
SCFD1-217ENST00000555953 MT1HP80294 61 aa-0.66□□□□□ -2.52
SCFD1-217ENST00000555953 KRTAP8-1Q8IUC2 63 aa-0.66□□□□□ -2.52
SCFD1-217ENST00000555953 DYNC1H1Q14204 4646 aaKnown RBP-0.67□□□□□ -2.52
SCFD1-217ENST00000555953 FAM186AA6NE01 2351 aa-0.67□□□□□ -2.52
SCFD1-217ENST00000555953 CELSR3Q9NYQ7 3312 aa-0.67□□□□□ -2.52
SCFD1-217ENST00000555953 C5orf42Q9H799 3197 aa-0.67□□□□□ -2.52
SCFD1-217ENST00000555953 S100ZQ8WXG8 99 aa-0.68□□□□□ -2.52
SCFD1-217ENST00000555953 DNAH7Q8WXX0 4024 aa-0.68□□□□□ -2.52
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms