RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 DNAH2Q9P225 4427 aa-0.57□□□□□ -2.5
SCFD1-216ENST00000555550 PLGLAQ15195 96 aa-0.58□□□□□ -2.5
SCFD1-216ENST00000555550 LINC00643Q86TS7 51 aa-0.58□□□□□ -2.5
SCFD1-216ENST00000555550 ARFGEF2Q9Y6D5 1785 aa-0.58□□□□□ -2.5
SCFD1-216ENST00000555550 UBR3Q6ZT12 1888 aa-0.58□□□□□ -2.5
SCFD1-216ENST00000555550 PIK3C2BO00750 1634 aa-0.59□□□□□ -2.5
SCFD1-216ENST00000555550 ATMQ13315 3056 aa-0.59□□□□□ -2.5
SCFD1-216ENST00000555550 PVALEFA0A1B0GWK0 134 aa-0.59□□□□□ -2.5
SCFD1-216ENST00000555550 SNRPFP62306 86 aaKnown RBP-0.59□□□□□ -2.5
SCFD1-216ENST00000555550 DEFB121Q5J5C9 76 aa-0.59□□□□□ -2.5
SCFD1-216ENST00000555550 V9GYS6 101 aa-0.59□□□□□ -2.5
SCFD1-216ENST00000555550 PDE4DIPQ5VU43 2346 aa-0.59□□□□□ -2.5
SCFD1-216ENST00000555550 PEA15Q15121 130 aa-0.6□□□□□ -2.51
SCFD1-216ENST00000555550 S100A16Q96FQ6 103 aaKnown RBP-0.6□□□□□ -2.51
SCFD1-216ENST00000555550 GAFA1Q96PS6 74 aa-0.6□□□□□ -2.51
SCFD1-216ENST00000555550 SPENQ96T58 3664 aaKnown RBP-0.6□□□□□ -2.51
SCFD1-216ENST00000555550 RNF17Q9BXT8 1623 aaKnown RBP-0.6□□□□□ -2.51
SCFD1-216ENST00000555550 DNAH14Q0VDD8 3507 aa-0.61□□□□□ -2.51
SCFD1-216ENST00000555550 CDH23Q9H251 3354 aa-0.61□□□□□ -2.51
SCFD1-216ENST00000555550 HEPN1Q6WQI6 88 aa-0.61□□□□□ -2.51
SCFD1-216ENST00000555550 URB2Q14146 1524 aaKnown RBP-0.61□□□□□ -2.51
SCFD1-216ENST00000555550 CCDC88BA6NC98 1476 aa-0.61□□□□□ -2.51
SCFD1-216ENST00000555550 DNAH8Q96JB1 4490 aa-0.62□□□□□ -2.51
SCFD1-216ENST00000555550 MAP3K1Q13233 1512 aa-0.62□□□□□ -2.51
SCFD1-216ENST00000555550 IFI6P09912 130 aa-0.62□□□□□ -2.51
SCFD1-216ENST00000555550 DEPDC5O75140 1603 aa-0.63□□□□□ -2.51
SCFD1-216ENST00000555550 CEBPZOSA8MTT3 80 aa-0.63□□□□□ -2.51
SCFD1-216ENST00000555550 LYNX1G3V0Z9 82 aa-0.63□□□□□ -2.51
SCFD1-216ENST00000555550 CYB5AP00167 134 aa-0.63□□□□□ -2.51
SCFD1-216ENST00000555550 SMARCA2P51531 1590 aa-0.63□□□□□ -2.51
SCFD1-216ENST00000555550 RB1CC1Q8TDY2 1594 aa-0.63□□□□□ -2.51
SCFD1-216ENST00000555550 PLCH1Q4KWH8 1693 aa-0.64□□□□□ -2.51
SCFD1-216ENST00000555550 ERVK-7P63135 1459 aa-0.64□□□□□ -2.51
SCFD1-216ENST00000555550 SMIM11AP58511 58 aa-0.64□□□□□ -2.51
SCFD1-216ENST00000555550 VPS13AQ96RL7 3174 aa-0.65□□□□□ -2.51
SCFD1-216ENST00000555550 ACYP1P07311 99 aa-0.65□□□□□ -2.51
SCFD1-216ENST00000555550 TJP1Q07157 1748 aa-0.65□□□□□ -2.51
SCFD1-216ENST00000555550 PRUNE2Q8WUY3 3088 aa-0.65□□□□□ -2.51
SCFD1-216ENST00000555550 EIF2AK4Q9P2K8 1649 aaKnown RBP-0.65□□□□□ -2.51
SCFD1-216ENST00000555550 UACAQ9BZF9 1416 aa-0.65□□□□□ -2.51
SCFD1-216ENST00000555550 ZC3H13Q5T200 1668 aaKnown RBP-0.65□□□□□ -2.51
SCFD1-216ENST00000555550 CFAP74Q9C0B2 1584 aa-0.66□□□□□ -2.51
SCFD1-216ENST00000555550 ARHGAP35Q9NRY4 1499 aa-0.66□□□□□ -2.51
SCFD1-216ENST00000555550 GNG2P59768 71 aa-0.66□□□□□ -2.52
SCFD1-216ENST00000555550 KRTAP19-5Q3LI72 72 aa-0.66□□□□□ -2.52
SCFD1-216ENST00000555550 CMYA5Q8N3K9 4069 aa-0.66□□□□□ -2.52
SCFD1-216ENST00000555550 DCAF1Q9Y4B6 1507 aa-0.66□□□□□ -2.52
SCFD1-216ENST00000555550 CFAP43Q8NDM7 1665 aa-0.66□□□□□ -2.52
SCFD1-216ENST00000555550 RICTORQ6R327 1708 aa-0.67□□□□□ -2.52
SCFD1-216ENST00000555550 KDM5DQ9BY66 1539 aa-0.67□□□□□ -2.52
SCFD1-216ENST00000555550 WFDC9Q8NEX5 89 aa-0.67□□□□□ -2.52
SCFD1-216ENST00000555550 PRO3102Q9H379 93 aa-0.67□□□□□ -2.52
SCFD1-216ENST00000555550 ABCA8O94911 1581 aa-0.67□□□□□ -2.52
SCFD1-216ENST00000555550 ACACAQ13085 2346 aa-0.67□□□□□ -2.52
SCFD1-216ENST00000555550 SMG1Q96Q15 3661 aaKnown RBP-0.68□□□□□ -2.52
SCFD1-216ENST00000555550 SPTBN5Q9NRC6 3674 aaKnown RBP-0.68□□□□□ -2.52
SCFD1-216ENST00000555550 C3orf79P0CE67 100 aa-0.68□□□□□ -2.52
SCFD1-216ENST00000555550 DEFB130BP0DP73 79 aa-0.68□□□□□ -2.52
SCFD1-216ENST00000555550 DEFB130AP0DP74 79 aa-0.68□□□□□ -2.52
SCFD1-216ENST00000555550 LINC00158P58513 81 aa-0.68□□□□□ -2.52
SCFD1-216ENST00000555550 Q9H521 79 aa-0.68□□□□□ -2.52
SCFD1-216ENST00000555550 PARP4Q9UKK3 1724 aaKnown RBP-0.68□□□□□ -2.52
SCFD1-216ENST00000555550 NDUFB1O75438 58 aa-0.69□□□□□ -2.52
SCFD1-216ENST00000555550 BVES-AS1Q5T3Y7 98 aa-0.69□□□□□ -2.52
SCFD1-216ENST00000555550 ST20Q9HBF5 79 aa-0.69□□□□□ -2.52
SCFD1-216ENST00000555550 ITSN2Q9NZM3 1697 aa-0.69□□□□□ -2.52
SCFD1-216ENST00000555550 ITSN1Q15811 1721 aa-0.69□□□□□ -2.52
SCFD1-216ENST00000555550 DDX60LQ5H9U9 1706 aaKnown RBP-0.69□□□□□ -2.52
SCFD1-216ENST00000555550 C9orf92A6NGG3 77 aa-0.7□□□□□ -2.52
SCFD1-216ENST00000555550 UMAD1C9J7I0 102 aa-0.7□□□□□ -2.52
SCFD1-216ENST00000555550 NDUFA4O00483 81 aa-0.7□□□□□ -2.52
SCFD1-216ENST00000555550 PRLHP81277 87 aa-0.7□□□□□ -2.52
SCFD1-216ENST00000555550 NREPQ16612 68 aa-0.7□□□□□ -2.52
SCFD1-216ENST00000555550 DYNC2H1Q8NCM8 4307 aaKnown RBP-0.7□□□□□ -2.52
SCFD1-216ENST00000555550 NRAPQ86VF7 1730 aa-0.71□□□□□ -2.52
SCFD1-216ENST00000555550 RPL38P63173 70 aaKnown RBP-0.71□□□□□ -2.52
SCFD1-216ENST00000555550 KCNQ1DNQ9H478 68 aa-0.71□□□□□ -2.52
SCFD1-216ENST00000555550 ABCC1P33527 1531 aa-0.71□□□□□ -2.52
SCFD1-216ENST00000555550 INO80Q9ULG1 1556 aaPredicted RBP-0.71□□□□□ -2.52
SCFD1-216ENST00000555550 ANKRD50Q9ULJ7 1429 aa-0.72□□□□□ -2.52
SCFD1-216ENST00000555550 DEFB131BA0A096LNP1 70 aa-0.72□□□□□ -2.52
SCFD1-216ENST00000555550 H3BNG1 76 aa-0.72□□□□□ -2.52
SCFD1-216ENST00000555550 ATP5EP2Q5VTU8 51 aa-0.72□□□□□ -2.52
SCFD1-216ENST00000555550 NHSQ6T4R5 1651 aa-0.72□□□□□ -2.53
SCFD1-216ENST00000555550 TRRAPQ9Y4A5 3859 aa-0.73□□□□□ -2.53
SCFD1-216ENST00000555550 KANTRA0A1W2PQU2 76 aa-0.73□□□□□ -2.53
SCFD1-216ENST00000555550 H0YGG7 62 aa-0.73□□□□□ -2.53
SCFD1-216ENST00000555550 H3BUT2 72 aa-0.73□□□□□ -2.53
SCFD1-216ENST00000555550 SMIM13P0DJ93 91 aa-0.73□□□□□ -2.53
SCFD1-216ENST00000555550 CRIP1P50238 77 aa-0.73□□□□□ -2.53
SCFD1-216ENST00000555550 S4R3F8 94 aa-0.73□□□□□ -2.53
SCFD1-216ENST00000555550 XIRP2A4UGR9 3374 aa-0.73□□□□□ -2.53
SCFD1-216ENST00000555550 GOLGB1Q14789 3259 aaKnown RBP-0.74□□□□□ -2.53
SCFD1-216ENST00000555550 SMR3BP02814 79 aaPredicted RBP-0.74□□□□□ -2.53
SCFD1-216ENST00000555550 IAPPP10997 89 aa-0.74□□□□□ -2.53
SCFD1-216ENST00000555550 C18orf32Q8TCD1 76 aa-0.74□□□□□ -2.53
SCFD1-216ENST00000555550 RRBP1Q9P2E9 1410 aaKnown RBP-0.74□□□□□ -2.53
SCFD1-216ENST00000555550 DIP2AQ14689 1571 aa-0.74□□□□□ -2.53
SCFD1-216ENST00000555550 IFI27P40305 119 aaPredicted RBP-0.75□□□□□ -2.53
SCFD1-216ENST00000555550 CCDC18Q5T9S5 1454 aa-0.75□□□□□ -2.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms