RNA–Protein interactions for RNA: ENST00000550136.1

PTCH1-220, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 2,388 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-220ENST00000550136 DHRS4-AS1Q9P1J3 65 aa5.75□□□□□ -1.49
PTCH1-220ENST00000550136 HUWE1Q7Z6Z7 4374 aaKnown RBP5.74□□□□□ -1.49
PTCH1-220ENST00000550136 IGLV5-52A0A0A0MRZ9 124 aa5.74□□□□□ -1.49
PTCH1-220ENST00000550136 IGKV2-24A0A0C4DH68 120 aa5.74□□□□□ -1.49
PTCH1-220ENST00000550136 RPL37AP61513 92 aaKnown RBP5.74□□□□□ -1.49
PTCH1-220ENST00000550136 CMC4P56277 68 aaPredicted RBP5.73□□□□□ -1.49
PTCH1-220ENST00000550136 TP53AIP1Q9HCN2 124 aa5.73□□□□□ -1.49
PTCH1-220ENST00000550136 NOP10Q9NPE3 64 aaKnown RBP5.73□□□□□ -1.49
PTCH1-220ENST00000550136 C6orf48Q9UBA6 75 aa5.73□□□□□ -1.49
PTCH1-220ENST00000550136 STARD9Q9P2P6 4700 aa5.73□□□□□ -1.49
PTCH1-220ENST00000550136 A8MUU9 505 aa5.73□□□□□ -1.49
PTCH1-220ENST00000550136 PLECQ15149 4684 aaKnown RBP5.73□□□□□ -1.49
PTCH1-220ENST00000550136 ALMS1Q8TCU4 4167 aa5.71□□□□□ -1.5
PTCH1-220ENST00000550136 C20orf166-AS1Q96NR2 134 aa5.71□□□□□ -1.5
PTCH1-220ENST00000550136 A0A087WSZ3 146 aa5.7□□□□□ -1.5
PTCH1-220ENST00000550136 KIAA1109Q2LD37 5005 aa5.69□□□□□ -1.5
PTCH1-220ENST00000550136 CSMD3Q7Z407 3707 aa5.69□□□□□ -1.5
PTCH1-220ENST00000550136 ACYP2P14621 99 aa5.69□□□□□ -1.5
PTCH1-220ENST00000550136 Q6ZRX8 168 aa5.69□□□□□ -1.5
PTCH1-220ENST00000550136 LINC00472Q9H8W2 130 aa5.69□□□□□ -1.5
PTCH1-220ENST00000550136 MMP24-AS1A0A0U1RRL7 71 aa5.68□□□□□ -1.5
PTCH1-220ENST00000550136 CDK2AP2O75956 126 aa5.68□□□□□ -1.5
PTCH1-220ENST00000550136 C16orf74Q96GX8 76 aa5.68□□□□□ -1.5
PTCH1-220ENST00000550136 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.67□□□□□ -1.5
PTCH1-220ENST00000550136 IGFL1Q6UW32 110 aa5.67□□□□□ -1.5
PTCH1-220ENST00000550136 CAMK2N2Q96S95 79 aa5.67□□□□□ -1.5
PTCH1-220ENST00000550136 NDUFAF8A1L188 74 aa5.66□□□□□ -1.5
PTCH1-220ENST00000550136 ANGP03950 147 aaKnown RBP5.66□□□□□ -1.5
PTCH1-220ENST00000550136 DNAH10OSP0CZ25 163 aa5.64□□□□□ -1.51
PTCH1-220ENST00000550136 CSNK1G2-AS1Q8NCQ2 148 aa5.64□□□□□ -1.51
PTCH1-220ENST00000550136 KRTAP4-9Q9BYQ8 210 aa5.64□□□□□ -1.51
PTCH1-220ENST00000550136 FAM168BA1KXE4 195 aa5.64□□□□□ -1.51
PTCH1-220ENST00000550136 DMAC1Q96GE9 116 aa5.64□□□□□ -1.51
PTCH1-220ENST00000550136 DEFB136Q30KP8 78 aa5.63□□□□□ -1.51
PTCH1-220ENST00000550136 KRTAP19-4Q3LI73 84 aa5.63□□□□□ -1.51
PTCH1-220ENST00000550136 ABCA13Q86UQ4 5058 aa5.63□□□□□ -1.51
PTCH1-220ENST00000550136 KRTAP4-16G5E9R7 235 aaPredicted RBP5.63□□□□□ -1.51
PTCH1-220ENST00000550136 SEC61BP60468 96 aaKnown RBP5.63□□□□□ -1.51
PTCH1-220ENST00000550136 DNAH10Q8IVF4 4471 aa5.62□□□□□ -1.51
PTCH1-220ENST00000550136 C10orf99Q6UWK7 81 aa5.62□□□□□ -1.51
PTCH1-220ENST00000550136 IGLV8-61A0A075B6I0 122 aa5.62□□□□□ -1.51
PTCH1-220ENST00000550136 NUPR2A6NF83 97 aa5.61□□□□□ -1.51
PTCH1-220ENST00000550136 CHTF8P0CG12 524 aa5.61□□□□□ -1.51
PTCH1-220ENST00000550136 FRAS1Q86XX4 4008 aa5.61□□□□□ -1.51
PTCH1-220ENST00000550136 LUZP6Q538Z0 58 aa5.6□□□□□ -1.51
PTCH1-220ENST00000550136 HECTD4Q9Y4D8 3996 aa5.6□□□□□ -1.51
PTCH1-220ENST00000550136 A0A0G2JQZ4 141 aa5.6□□□□□ -1.51
PTCH1-220ENST00000550136 A0A1W2PNN7 141 aa5.6□□□□□ -1.51
PTCH1-220ENST00000550136 SPRR1AP35321 89 aa5.6□□□□□ -1.51
PTCH1-220ENST00000550136 IGLV7-43P04211 117 aa5.59□□□□□ -1.51
PTCH1-220ENST00000550136 KRTAP26-1Q6PEX3 210 aa5.59□□□□□ -1.51
PTCH1-220ENST00000550136 LINC00304Q8N9R0 145 aa5.59□□□□□ -1.51
PTCH1-220ENST00000550136 C8orf17Q9NRJ1 99 aa5.59□□□□□ -1.51
PTCH1-220ENST00000550136 IGLV9-49A0A0B4J1Y8 123 aa5.57□□□□□ -1.52
PTCH1-220ENST00000550136 LY6G6CO95867 125 aa5.57□□□□□ -1.52
PTCH1-220ENST00000550136 SLURP1P55000 103 aa5.57□□□□□ -1.52
PTCH1-220ENST00000550136 Q5W150 140 aa5.56□□□□□ -1.52
PTCH1-220ENST00000550136 A0A087WTM6 91 aa5.55□□□□□ -1.52
PTCH1-220ENST00000550136 A0A096LPF7 62 aa5.55□□□□□ -1.52
PTCH1-220ENST00000550136 K7ERS5 55 aa5.55□□□□□ -1.52
PTCH1-220ENST00000550136 SPINT4Q6UDR6 99 aa5.55□□□□□ -1.52
PTCH1-220ENST00000550136 GIG44P09565 113 aaPredicted RBP5.54□□□□□ -1.52
PTCH1-220ENST00000550136 KRTAP15-1Q3LI76 137 aa5.54□□□□□ -1.52
PTCH1-220ENST00000550136 LCE4AQ5TA78 99 aa5.54□□□□□ -1.52
PTCH1-220ENST00000550136 PRO0255Q9UI72 69 aa5.54□□□□□ -1.52
PTCH1-220ENST00000550136 TLX1NBP0CAT3 122 aa5.53□□□□□ -1.52
PTCH1-220ENST00000550136 PLA2G2DQ9UNK4 145 aa5.52□□□□□ -1.53
PTCH1-220ENST00000550136 RPL37AP8A6NKH3 93 aa5.51□□□□□ -1.53
PTCH1-220ENST00000550136 C4orf3Q8WVX3 66 aa5.51□□□□□ -1.53
PTCH1-220ENST00000550136 DEFB130BP0DP73 79 aa5.51□□□□□ -1.53
PTCH1-220ENST00000550136 DEFB130AP0DP74 79 aa5.51□□□□□ -1.53
PTCH1-220ENST00000550136 KRTAP4-5Q9BYR2 181 aa5.5□□□□□ -1.53
PTCH1-220ENST00000550136 KRTAP4-2Q9BYR5 136 aa5.5□□□□□ -1.53
PTCH1-220ENST00000550136 DYNC1H1Q14204 4646 aaKnown RBP5.49□□□□□ -1.53
PTCH1-220ENST00000550136 MRPL34Q9BQ48 92 aaKnown RBP5.48□□□□□ -1.53
PTCH1-220ENST00000550136 DNAH11Q96DT5 4516 aa5.47□□□□□ -1.53
PTCH1-220ENST00000550136 KRTAP11-1Q8IUC1 163 aa5.47□□□□□ -1.53
PTCH1-220ENST00000550136 A0A1B0GVY2 172 aa5.45□□□□□ -1.54
PTCH1-220ENST00000550136 KRTAP13-3Q3SY46 172 aa5.45□□□□□ -1.54
PTCH1-220ENST00000550136 SSBP3-AS1Q7Z2R9 100 aa5.45□□□□□ -1.54
PTCH1-220ENST00000550136 KMT2AQ03164 3969 aa5.45□□□□□ -1.54
PTCH1-220ENST00000550136 LELP1Q5T871 98 aa5.45□□□□□ -1.54
PTCH1-220ENST00000550136 C15orf56Q8N910 161 aa5.45□□□□□ -1.54
PTCH1-220ENST00000550136 HERC1Q15751 4861 aa5.45□□□□□ -1.54
PTCH1-220ENST00000550136 CRIPTQ9P021 101 aa5.44□□□□□ -1.54
PTCH1-220ENST00000550136 DNAH17Q9UFH2 4485 aa5.43□□□□□ -1.54
PTCH1-220ENST00000550136 Q96NJ1 140 aa5.43□□□□□ -1.54
PTCH1-220ENST00000550136 KRTAP4-11Q9BYQ6 195 aa5.43□□□□□ -1.54
PTCH1-220ENST00000550136 DNAH6Q9C0G6 4158 aa5.43□□□□□ -1.54
PTCH1-220ENST00000550136 KRTAP9-7A8MTY7 169 aa5.43□□□□□ -1.54
PTCH1-220ENST00000550136 H0YAA0 97 aa5.42□□□□□ -1.54
PTCH1-220ENST00000550136 A0A1B0GVX0 72 aa5.42□□□□□ -1.54
PTCH1-220ENST00000550136 VPS13DQ5THJ4 4388 aa5.41□□□□□ -1.54
PTCH1-220ENST00000550136 FAT2Q9NYQ8 4349 aa5.39□□□□□ -1.55
PTCH1-220ENST00000550136 PSORS1C2Q9UIG4 136 aa5.39□□□□□ -1.55
PTCH1-220ENST00000550136 PKHD1P08F94 4074 aa5.39□□□□□ -1.55
PTCH1-220ENST00000550136 PANO1I0J062 215 aa5.38□□□□□ -1.55
PTCH1-220ENST00000550136 SPRR1BP22528 89 aa5.38□□□□□ -1.55
PTCH1-220ENST00000550136 UBR4Q5T4S7 5183 aa5.37□□□□□ -1.55
PTCH1-220ENST00000550136 HSPG2P98160 4391 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms