RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 SPANXA1Q9NS26 97 aa1.14□□□□□ -2.23
CD44-235ENST00000532339 LOC110117498A0A087WWA1 95 aa1.13□□□□□ -2.23
CD44-235ENST00000532339 GCHFRP30047 84 aa1.13□□□□□ -2.23
CD44-235ENST00000532339 SPINK7P58062 85 aa1.13□□□□□ -2.23
CD44-235ENST00000532339 S100A12P80511 92 aa1.13□□□□□ -2.23
CD44-235ENST00000532339 KRTAP19-7Q3SYF9 63 aa1.13□□□□□ -2.23
CD44-235ENST00000532339 WFDC13Q8IUB5 93 aa1.13□□□□□ -2.23
CD44-235ENST00000532339 CRIPTQ9P021 101 aa1.13□□□□□ -2.23
CD44-235ENST00000532339 MAP1LC3B2A6NCE7 125 aa1.12□□□□□ -2.23
CD44-235ENST00000532339 MRPS10P82664 201 aaKnown RBP1.12□□□□□ -2.23
CD44-235ENST00000532339 PRR15Q8IV56 129 aa1.12□□□□□ -2.23
CD44-235ENST00000532339 MT1MQ8N339 61 aa1.12□□□□□ -2.23
CD44-235ENST00000532339 MAP1LC3BQ9GZQ8 125 aa1.12□□□□□ -2.23
CD44-235ENST00000532339 CCDC160A6NGH7 325 aa1.11□□□□□ -2.23
CD44-235ENST00000532339 RPL39P62891 51 aaKnown RBP1.11□□□□□ -2.23
CD44-235ENST00000532339 SMIM15Q7Z3B0 74 aa1.11□□□□□ -2.23
CD44-235ENST00000532339 TMEM254Q8TBM7 123 aa1.11□□□□□ -2.23
CD44-235ENST00000532339 AMELXQ99217 191 aa1.11□□□□□ -2.23
CD44-235ENST00000532339 CNFNQ9BYD5 112 aa1.11□□□□□ -2.23
CD44-235ENST00000532339 FAM25AB3EWG3 89 aa1.1□□□□□ -2.23
CD44-235ENST00000532339 FAM25CB3EWG5 89 aa1.1□□□□□ -2.23
CD44-235ENST00000532339 FAM25GB3EWG6 89 aa1.1□□□□□ -2.23
CD44-235ENST00000532339 K7ERJ3 54 aa1.1□□□□□ -2.23
CD44-235ENST00000532339 SIX6O95475 246 aa1.1□□□□□ -2.23
CD44-235ENST00000532339 C9orf62Q8N4C0 152 aa1.1□□□□□ -2.23
CD44-235ENST00000532339 COX7B2Q8TF08 81 aa1.1□□□□□ -2.23
CD44-235ENST00000532339 PLAC4Q8WY50 150 aa1.1□□□□□ -2.23
CD44-235ENST00000532339 CHCHD1Q96BP2 118 aaKnown RBP1.1□□□□□ -2.23
CD44-235ENST00000532339 TCEAL7Q9BRU2 100 aa1.1□□□□□ -2.23
CD44-235ENST00000532339 C2orf88Q9BSF0 95 aa1.1□□□□□ -2.23
CD44-235ENST00000532339 TMEM191AQ9H0A3 160 aa1.1□□□□□ -2.23
CD44-235ENST00000532339 A0A087WSZ3 146 aa1.09□□□□□ -2.23
CD44-235ENST00000532339 TRBV10-3A0A0K0K1G6 114 aa1.09□□□□□ -2.23
CD44-235ENST00000532339 D6R8Y8 96 aa1.09□□□□□ -2.23
CD44-235ENST00000532339 INE1O15225 51 aa1.09□□□□□ -2.23
CD44-235ENST00000532339 IFI27P40305 119 aaPredicted RBP1.09□□□□□ -2.23
CD44-235ENST00000532339 COX17Q14061 63 aa1.09□□□□□ -2.23
CD44-235ENST00000532339 SMIM4Q8WVI0 70 aa1.09□□□□□ -2.23
CD44-235ENST00000532339 CDC42SE1Q9NRR8 79 aa1.09□□□□□ -2.23
CD44-235ENST00000532339 CDKN2A-AS1Q9UH64 79 aa1.09□□□□□ -2.23
CD44-235ENST00000532339 HIST1H2BKO60814 126 aa1.08□□□□□ -2.24
CD44-235ENST00000532339 HIST1H2BJP06899 126 aa1.08□□□□□ -2.24
CD44-235ENST00000532339 SEC11AP67812 179 aa1.08□□□□□ -2.24
CD44-235ENST00000532339 BAGE2Q86Y30 109 aa1.08□□□□□ -2.24
CD44-235ENST00000532339 RAB37Q96AX2 223 aa1.08□□□□□ -2.24
CD44-235ENST00000532339 TMEM141Q96I45 108 aa1.08□□□□□ -2.24
CD44-235ENST00000532339 ERG28Q9UKR5 140 aa1.08□□□□□ -2.24
CD44-235ENST00000532339 A0A1B0GV72 72 aa1.07□□□□□ -2.24
CD44-235ENST00000532339 NCR3O14931 201 aa1.07□□□□□ -2.24
CD44-235ENST00000532339 PPP1R17O96001 155 aa1.07□□□□□ -2.24
CD44-235ENST00000532339 FAUP35544 74 aaKnown RBP1.07□□□□□ -2.24
CD44-235ENST00000532339 PHGR1C9JFL3 82 aa1.06□□□□□ -2.24
CD44-235ENST00000532339 PDE6GP18545 87 aa1.06□□□□□ -2.24
CD44-235ENST00000532339 LINC00299Q6ZSB3 139 aa1.06□□□□□ -2.24
CD44-235ENST00000532339 NAT8BQ9UHF3 227 aa1.06□□□□□ -2.24
CD44-235ENST00000532339 TRBV7-7A0A0K0K1E9 115 aa1.05□□□□□ -2.24
CD44-235ENST00000532339 TEX49A0A1B0GTD5 131 aa1.05□□□□□ -2.24
CD44-235ENST00000532339 NDUFB6O95139 128 aa1.05□□□□□ -2.24
CD44-235ENST00000532339 RPL35P42766 123 aaKnown RBP1.05□□□□□ -2.24
CD44-235ENST00000532339 ORMDL1Q9P0S3 153 aa1.05□□□□□ -2.24
CD44-235ENST00000532339 TNFSF18Q9UNG2 199 aa1.05□□□□□ -2.24
CD44-235ENST00000532339 CSAG1Q6PB30 78 aa1.04□□□□□ -2.24
CD44-235ENST00000532339 hDV103S1A0JD37 113 aa1.03□□□□□ -2.24
CD44-235ENST00000532339 Q5BKY6 102 aa1.03□□□□□ -2.24
CD44-235ENST00000532339 DEFB105AQ8NG35 78 aa1.03□□□□□ -2.24
CD44-235ENST00000532339 C20orf78Q9BR46 151 aa1.03□□□□□ -2.24
CD44-235ENST00000532339 LAMTOR2Q9Y2Q5 125 aa1.03□□□□□ -2.24
CD44-235ENST00000532339 TRAV23DV6A0A075B6W5 121 aa1.02□□□□□ -2.25
CD44-235ENST00000532339 A0A087WXM4 84 aa1.02□□□□□ -2.25
CD44-235ENST00000532339 ZNF815PA8K554 130 aa1.02□□□□□ -2.25
CD44-235ENST00000532339 PFDN1O60925 122 aa1.02□□□□□ -2.25
CD44-235ENST00000532339 LINC00158P58513 81 aa1.02□□□□□ -2.25
CD44-235ENST00000532339 LSM3P62310 102 aaKnown RBP1.02□□□□□ -2.25
CD44-235ENST00000532339 GNGT1P63211 74 aa1.02□□□□□ -2.25
CD44-235ENST00000532339 F8W1H4 67 aa1.01□□□□□ -2.25
CD44-235ENST00000532339 LYRM1O43325 122 aa1.01□□□□□ -2.25
CD44-235ENST00000532339 SPINK8P0C7L1 97 aa1.01□□□□□ -2.25
CD44-235ENST00000532339 FABP2P12104 132 aa1.01□□□□□ -2.25
CD44-235ENST00000532339 SERF2P84101 59 aa1.01□□□□□ -2.25
CD44-235ENST00000532339 SFTA2Q6UW10 78 aa1.01□□□□□ -2.25
CD44-235ENST00000532339 TOMM5Q8N4H5 51 aa1.01□□□□□ -2.25
CD44-235ENST00000532339 PSMG3Q9BT73 122 aaPredicted RBP1.01□□□□□ -2.25
CD44-235ENST00000532339 SMIM2Q9BVW6 85 aa1.01□□□□□ -2.25
CD44-235ENST00000532339 SMIM3Q9BZL3 60 aa1.01□□□□□ -2.25
CD44-235ENST00000532339 HSPB11Q9Y547 144 aa1.01□□□□□ -2.25
CD44-235ENST00000532339 CTXND1A0A1B0GTU2 59 aa1□□□□□ -2.25
CD44-235ENST00000532339 DNAL4O96015 105 aa1□□□□□ -2.25
CD44-235ENST00000532339 C3orf79P0CE67 100 aa1□□□□□ -2.25
CD44-235ENST00000532339 COX7CP15954 63 aa1□□□□□ -2.25
CD44-235ENST00000532339 TEN1Q86WV5 123 aa1□□□□□ -2.25
CD44-235ENST00000532339 CLEC2BQ92478 149 aa1□□□□□ -2.25
CD44-235ENST00000532339 MT1LQ93083 61 aa1□□□□□ -2.25
CD44-235ENST00000532339 IGLV5-48A0A075B6I7 105 aa0.99□□□□□ -2.25
CD44-235ENST00000532339 BORCS7-ASMTA0A0B4J1R7 106 aa0.99□□□□□ -2.25
CD44-235ENST00000532339 S100A7L2Q5SY68 101 aa0.99□□□□□ -2.25
CD44-235ENST00000532339 Q6JHZ5 121 aa0.99□□□□□ -2.25
CD44-235ENST00000532339 IGIPA6NJ69 53 aa0.98□□□□□ -2.25
CD44-235ENST00000532339 H3BRM9 83 aa0.98□□□□□ -2.25
CD44-235ENST00000532339 MIR22HGQ0VDD5 57 aa0.98□□□□□ -2.25
CD44-235ENST00000532339 NEDD8Q15843 81 aa0.98□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms