RNA–Protein interactions for RNA: ENST00000530660.5

PCF11-204, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 2

Gene PCF11, Length 3,309 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-204ENST00000530660 NOTCH1P46531 2555 aa8.38□□□□□ -1.07
PCF11-204ENST00000530660 KRTAP13-3Q3SY46 172 aa8.37□□□□□ -1.07
PCF11-204ENST00000530660 LYSTQ99698 3801 aa8.35□□□□□ -1.07
PCF11-204ENST00000530660 FLG2Q5D862 2391 aaPredicted RBP8.35□□□□□ -1.07
PCF11-204ENST00000530660 MAST4O15021 2626 aa8.35□□□□□ -1.07
PCF11-204ENST00000530660 ROMO1P60602 79 aa8.35□□□□□ -1.07
PCF11-204ENST00000530660 COL6A5A8TX70 2615 aa8.33□□□□□ -1.08
PCF11-204ENST00000530660 SPINK6Q6UWN8 80 aa8.33□□□□□ -1.08
PCF11-204ENST00000530660 KRTAP1-5Q9BYS1 174 aa8.3□□□□□ -1.08
PCF11-204ENST00000530660 ANAPC11Q9NYG5 84 aa8.27□□□□□ -1.09
PCF11-204ENST00000530660 KRTAP25-1Q3LHN0 102 aa8.26□□□□□ -1.09
PCF11-204ENST00000530660 DNAH9Q9NYC9 4486 aa8.24□□□□□ -1.09
PCF11-204ENST00000530660 MEGF8Q7Z7M0 2845 aa8.23□□□□□ -1.09
PCF11-204ENST00000530660 KRTAP13-1Q8IUC0 172 aa8.23□□□□□ -1.09
PCF11-204ENST00000530660 STAB1Q9NY15 2570 aa8.22□□□□□ -1.09
PCF11-204ENST00000530660 KMT2BQ9UMN6 2715 aaPredicted RBP8.22□□□□□ -1.09
PCF11-204ENST00000530660 CMYA5Q8N3K9 4069 aa8.21□□□□□ -1.09
PCF11-204ENST00000530660 IGLV7-43P04211 117 aa8.21□□□□□ -1.1
PCF11-204ENST00000530660 PANO1I0J062 215 aa8.21□□□□□ -1.1
PCF11-204ENST00000530660 CRIPTQ9P021 101 aa8.2□□□□□ -1.1
PCF11-204ENST00000530660 P0C880 135 aa8.19□□□□□ -1.1
PCF11-204ENST00000530660 IGLV5-52A0A0A0MRZ9 124 aa8.18□□□□□ -1.1
PCF11-204ENST00000530660 WWC2-AS2Q96NR7 200 aa8.17□□□□□ -1.1
PCF11-204ENST00000530660 SPINK1P00995 79 aa8.17□□□□□ -1.1
PCF11-204ENST00000530660 LINC00304Q8N9R0 145 aa8.16□□□□□ -1.1
PCF11-204ENST00000530660 A8MUU9 505 aa8.16□□□□□ -1.1
PCF11-204ENST00000530660 HUWE1Q7Z6Z7 4374 aaKnown RBP8.15□□□□□ -1.11
PCF11-204ENST00000530660 J3QKU1 62 aa8.14□□□□□ -1.11
PCF11-204ENST00000530660 IGKV2-30P06310 120 aa8.14□□□□□ -1.11
PCF11-204ENST00000530660 FRAS1Q86XX4 4008 aa8.13□□□□□ -1.11
PCF11-204ENST00000530660 DNAH3Q8TD57 4116 aa8.12□□□□□ -1.11
PCF11-204ENST00000530660 LINC00483Q53H64 154 aa8.12□□□□□ -1.11
PCF11-204ENST00000530660 H0YAA0 97 aa8.11□□□□□ -1.11
PCF11-204ENST00000530660 IGKV2D-30A0A075B6S6 120 aa8.1□□□□□ -1.11
PCF11-204ENST00000530660 FAM229AH3BQW9 127 aa8.1□□□□□ -1.11
PCF11-204ENST00000530660 C14orf177Q52M58 125 aa8.1□□□□□ -1.11
PCF11-204ENST00000530660 UBE2DNLQ8IWF7 75 aa8.09□□□□□ -1.11
PCF11-204ENST00000530660 TGP01266 2768 aa8.09□□□□□ -1.11
PCF11-204ENST00000530660 Q6ZSA8 131 aa8.07□□□□□ -1.12
PCF11-204ENST00000530660 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.07□□□□□ -1.12
PCF11-204ENST00000530660 DNAH7Q8WXX0 4024 aa8.07□□□□□ -1.12
PCF11-204ENST00000530660 STAB2Q8WWQ8 2551 aa8.07□□□□□ -1.12
PCF11-204ENST00000530660 CIRBP-AS1Q8TBR5 109 aa8.06□□□□□ -1.12
PCF11-204ENST00000530660 KRTAP24-1Q3LI83 254 aa8.04□□□□□ -1.12
PCF11-204ENST00000530660 DNAH8Q96JB1 4490 aa8.03□□□□□ -1.12
PCF11-204ENST00000530660 LY6G6CO95867 125 aa8□□□□□ -1.13
PCF11-204ENST00000530660 Q8N1X5 172 aa8□□□□□ -1.13
PCF11-204ENST00000530660 SPACA4Q8TDM5 124 aa8□□□□□ -1.13
PCF11-204ENST00000530660 SSBP3-AS1Q7Z2R9 100 aa7.99□□□□□ -1.13
PCF11-204ENST00000530660 PSORS1C2Q9UIG4 136 aa7.99□□□□□ -1.13
PCF11-204ENST00000530660 KRTAP16-1A8MUX0 517 aa7.98□□□□□ -1.13
PCF11-204ENST00000530660 APLNQ9ULZ1 77 aa7.97□□□□□ -1.13
PCF11-204ENST00000530660 TYMSOSQ8TAI1 123 aa7.97□□□□□ -1.13
PCF11-204ENST00000530660 Q6ZRN7 208 aaPredicted RBP7.93□□□□□ -1.14
PCF11-204ENST00000530660 DNAH17Q9UFH2 4485 aa7.92□□□□□ -1.14
PCF11-204ENST00000530660 NBDYA0A0U1RRE5 68 aa7.92□□□□□ -1.14
PCF11-204ENST00000530660 MGAM2Q2M2H8 2515 aa7.92□□□□□ -1.14
PCF11-204ENST00000530660 A0A1B0GU33 70 aa7.91□□□□□ -1.14
PCF11-204ENST00000530660 PLECQ15149 4684 aaKnown RBP7.9□□□□□ -1.14
PCF11-204ENST00000530660 NDUFAF8A1L188 74 aa7.89□□□□□ -1.15
PCF11-204ENST00000530660 SPINT4Q6UDR6 99 aa7.88□□□□□ -1.15
PCF11-204ENST00000530660 DMBT1Q9UGM3 2413 aaPredicted RBP7.86□□□□□ -1.15
PCF11-204ENST00000530660 HECTD4Q9Y4D8 3996 aa7.85□□□□□ -1.15
PCF11-204ENST00000530660 H1FX-AS1Q4G0G2 97 aa7.83□□□□□ -1.16
PCF11-204ENST00000530660 A0A087WTM6 91 aa7.82□□□□□ -1.16
PCF11-204ENST00000530660 DYNC2H1Q8NCM8 4307 aaKnown RBP7.81□□□□□ -1.16
PCF11-204ENST00000530660 FBN3Q75N90 2809 aa7.8□□□□□ -1.16
PCF11-204ENST00000530660 A0A0A0MQY5 61 aa7.79□□□□□ -1.16
PCF11-204ENST00000530660 C20orf166-AS1Q96NR2 134 aa7.79□□□□□ -1.16
PCF11-204ENST00000530660 K7ERS5 55 aa7.77□□□□□ -1.17
PCF11-204ENST00000530660 TPRXLQ17RH7 258 aa7.76□□□□□ -1.17
PCF11-204ENST00000530660 VPS13DQ5THJ4 4388 aa7.75□□□□□ -1.17
PCF11-204ENST00000530660 NUPR2A6NF83 97 aa7.74□□□□□ -1.17
PCF11-204ENST00000530660 C10orf95Q9H7T3 257 aa7.72□□□□□ -1.17
PCF11-204ENST00000530660 KMT2AQ03164 3969 aa7.71□□□□□ -1.18
PCF11-204ENST00000530660 KRTAP15-1Q3LI76 137 aa7.7□□□□□ -1.18
PCF11-204ENST00000530660 STARD9Q9P2P6 4700 aa7.7□□□□□ -1.18
PCF11-204ENST00000530660 DNAH2Q9P225 4427 aa7.7□□□□□ -1.18
PCF11-204ENST00000530660 COX6B2Q6YFQ2 88 aa7.68□□□□□ -1.18
PCF11-204ENST00000530660 KRTAP13-2Q52LG2 175 aa7.67□□□□□ -1.18
PCF11-204ENST00000530660 KRTAP3-1Q9BYR8 98 aa7.65□□□□□ -1.18
PCF11-204ENST00000530660 DNAH6Q9C0G6 4158 aa7.62□□□□□ -1.19
PCF11-204ENST00000530660 DNAH11Q96DT5 4516 aa7.61□□□□□ -1.19
PCF11-204ENST00000530660 A0A0D9SG42 100 aa7.58□□□□□ -1.2
PCF11-204ENST00000530660 RPL37P61927 97 aaKnown RBP7.56□□□□□ -1.2
PCF11-204ENST00000530660 PRKDCP78527 4128 aaKnown RBP7.55□□□□□ -1.2
PCF11-204ENST00000530660 KRTAP13-4Q3LI77 160 aa7.51□□□□□ -1.21
PCF11-204ENST00000530660 LRP1BQ9NZR2 4599 aa7.51□□□□□ -1.21
PCF11-204ENST00000530660 DNAH5Q8TE73 4624 aa7.5□□□□□ -1.21
PCF11-204ENST00000530660 KRTAP10-2P60368 255 aa7.49□□□□□ -1.21
PCF11-204ENST00000530660 KRTAP1-4P0C5Y4 121 aa7.48□□□□□ -1.21
PCF11-204ENST00000530660 C9orf92A6NGG3 77 aa7.42□□□□□ -1.22
PCF11-204ENST00000530660 KRTAP10-6P60371 365 aaPredicted RBP7.41□□□□□ -1.22
PCF11-204ENST00000530660 VPS13BQ7Z7G8 4022 aa7.39□□□□□ -1.23
PCF11-204ENST00000530660 KRTAP10-1P60331 282 aa7.38□□□□□ -1.23
PCF11-204ENST00000530660 LUZP6Q538Z0 58 aa7.37□□□□□ -1.23
PCF11-204ENST00000530660 S4R3F8 94 aa7.32□□□□□ -1.24
PCF11-204ENST00000530660 KRTAP12-2P59991 146 aa7.31□□□□□ -1.24
PCF11-204ENST00000530660 FAT2Q9NYQ8 4349 aa7.3□□□□□ -1.24
PCF11-204ENST00000530660 PKD1P98161 4303 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms