RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 TIMM8BQ9Y5J9 83 aaPredicted RBP2.43□□□□□ -2.02
CD44-220ENST00000525688 IGKV3D-7A0A0C4DH55 119 aa2.42□□□□□ -2.02
CD44-220ENST00000525688 IGKV3OR2-268A0A0C4DH90 116 aa2.42□□□□□ -2.02
CD44-220ENST00000525688 A0A1W2PNN7 141 aa2.42□□□□□ -2.02
CD44-220ENST00000525688 HTN1P15515 57 aa2.42□□□□□ -2.02
CD44-220ENST00000525688 COX7B2Q8TF08 81 aa2.42□□□□□ -2.02
CD44-220ENST00000525688 ARL2-SNX15V9GYD0 113 aa2.42□□□□□ -2.02
CD44-220ENST00000525688 DNAH17Q9UFH2 4485 aa2.42□□□□□ -2.02
CD44-220ENST00000525688 FAT2Q9NYQ8 4349 aa2.41□□□□□ -2.02
CD44-220ENST00000525688 LY6G6CO95867 125 aa2.41□□□□□ -2.02
CD44-220ENST00000525688 DEFB130BP0DP73 79 aa2.41□□□□□ -2.02
CD44-220ENST00000525688 DEFB130AP0DP74 79 aa2.41□□□□□ -2.02
CD44-220ENST00000525688 COX8AP10176 69 aa2.41□□□□□ -2.02
CD44-220ENST00000525688 NOP10Q9NPE3 64 aaKnown RBP2.41□□□□□ -2.02
CD44-220ENST00000525688 HECTD4Q9Y4D8 3996 aa2.41□□□□□ -2.02
CD44-220ENST00000525688 PCLOQ9Y6V0 5065 aa2.4□□□□□ -2.02
CD44-220ENST00000525688 KIAA1109Q2LD37 5005 aa2.4□□□□□ -2.03
CD44-220ENST00000525688 TRAV21A0A0B4J279 112 aa2.4□□□□□ -2.03
CD44-220ENST00000525688 TRBV6-1A0A0K0K1D8 114 aa2.4□□□□□ -2.03
CD44-220ENST00000525688 SPINK4O60575 86 aa2.4□□□□□ -2.03
CD44-220ENST00000525688 ARMS2P0C7Q2 107 aa2.4□□□□□ -2.03
CD44-220ENST00000525688 HTN3P15516 51 aa2.4□□□□□ -2.03
CD44-220ENST00000525688 CCL18P55774 89 aa2.4□□□□□ -2.03
CD44-220ENST00000525688 KRTAP10-10P60014 251 aa2.4□□□□□ -2.03
CD44-220ENST00000525688 Q6JHZ5 121 aa2.4□□□□□ -2.03
CD44-220ENST00000525688 PKHD1P08F94 4074 aa2.4□□□□□ -2.03
CD44-220ENST00000525688 DNAH11Q96DT5 4516 aa2.4□□□□□ -2.03
CD44-220ENST00000525688 PKD1P98161 4303 aa2.39□□□□□ -2.03
CD44-220ENST00000525688 TRGV2A0A075B6R0 118 aa2.39□□□□□ -2.03
CD44-220ENST00000525688 TRGV1A0A0A0MS02 117 aa2.39□□□□□ -2.03
CD44-220ENST00000525688 NBDYA0A0U1RRE5 68 aa2.39□□□□□ -2.03
CD44-220ENST00000525688 H3BNG1 76 aa2.39□□□□□ -2.03
CD44-220ENST00000525688 CRIP1P50238 77 aa2.39□□□□□ -2.03
CD44-220ENST00000525688 LCE3AQ5TA76 89 aa2.39□□□□□ -2.03
CD44-220ENST00000525688 FAM74A4Q5TZK3 123 aa2.39□□□□□ -2.03
CD44-220ENST00000525688 HERC2O95714 4834 aa2.39□□□□□ -2.03
CD44-220ENST00000525688 DYNC1H1Q14204 4646 aaKnown RBP2.38□□□□□ -2.03
CD44-220ENST00000525688 A0A096LPF7 62 aa2.38□□□□□ -2.03
CD44-220ENST00000525688 LEPROTL1O95214 131 aa2.38□□□□□ -2.03
CD44-220ENST00000525688 DNAL4O96015 105 aa2.38□□□□□ -2.03
CD44-220ENST00000525688 RPL37AP61513 92 aaKnown RBP2.38□□□□□ -2.03
CD44-220ENST00000525688 TXNDC17Q9BRA2 123 aa2.38□□□□□ -2.03
CD44-220ENST00000525688 PRR15LQ9BU68 103 aa2.38□□□□□ -2.03
CD44-220ENST00000525688 GNG13Q9P2W3 67 aa2.38□□□□□ -2.03
CD44-220ENST00000525688 PRO0255Q9UI72 69 aa2.38□□□□□ -2.03
CD44-220ENST00000525688 RYR1P21817 5038 aa2.37□□□□□ -2.03
CD44-220ENST00000525688 F8VRH5 84 aa2.37□□□□□ -2.03
CD44-220ENST00000525688 ATP5EP2Q5VTU8 51 aa2.37□□□□□ -2.03
CD44-220ENST00000525688 BAGE2Q86Y30 109 aa2.37□□□□□ -2.03
CD44-220ENST00000525688 UBE2D4Q9Y2X8 147 aa2.37□□□□□ -2.03
CD44-220ENST00000525688 LINC01558Q9Y6Z2 57 aa2.37□□□□□ -2.03
CD44-220ENST00000525688 A0A087WTM6 91 aa2.36□□□□□ -2.03
CD44-220ENST00000525688 TRGV4A0A0C4DH28 118 aa2.36□□□□□ -2.03
CD44-220ENST00000525688 D6R8Y8 96 aa2.36□□□□□ -2.03
CD44-220ENST00000525688 H3BVH4 76 aa2.36□□□□□ -2.03
CD44-220ENST00000525688 INE1O15225 51 aa2.36□□□□□ -2.03
CD44-220ENST00000525688 C3orf79P0CE67 100 aa2.36□□□□□ -2.03
CD44-220ENST00000525688 MUSTN1Q8IVN3 82 aa2.36□□□□□ -2.03
CD44-220ENST00000525688 UBE2DNLQ8IWF7 75 aa2.36□□□□□ -2.03
CD44-220ENST00000525688 IGKV2-24A0A0C4DH68 120 aa2.35□□□□□ -2.03
CD44-220ENST00000525688 TRBV6-5A0A0K0K1A5 114 aa2.35□□□□□ -2.03
CD44-220ENST00000525688 M0R2N4 97 aa2.35□□□□□ -2.03
CD44-220ENST00000525688 KRTAP5-1Q6L8H4 278 aa2.35□□□□□ -2.03
CD44-220ENST00000525688 V9GYV3 84 aa2.35□□□□□ -2.03
CD44-220ENST00000525688 DNAH5Q8TE73 4624 aa2.35□□□□□ -2.03
CD44-220ENST00000525688 LRP1BQ9NZR2 4599 aa2.35□□□□□ -2.03
CD44-220ENST00000525688 LOC110117498A0A087WWA1 95 aa2.34□□□□□ -2.03
CD44-220ENST00000525688 IGKV2-29A2NJV5 120 aaPredicted RBP2.34□□□□□ -2.03
CD44-220ENST00000525688 IFI27P40305 119 aaPredicted RBP2.34□□□□□ -2.03
CD44-220ENST00000525688 LINC00304Q8N9R0 145 aa2.34□□□□□ -2.03
CD44-220ENST00000525688 ABCA13Q86UQ4 5058 aa2.34□□□□□ -2.04
CD44-220ENST00000525688 APOBP04114 4563 aaKnown RBP2.33□□□□□ -2.04
CD44-220ENST00000525688 UQCR11O14957 56 aa2.33□□□□□ -2.04
CD44-220ENST00000525688 Q6ZRN7 208 aaPredicted RBP2.33□□□□□ -2.04
CD44-220ENST00000525688 COA5Q86WW8 74 aa2.33□□□□□ -2.04
CD44-220ENST00000525688 WFDC10BQ8IUB3 73 aa2.33□□□□□ -2.04
CD44-220ENST00000525688 CNFNQ9BYD5 112 aa2.33□□□□□ -2.04
CD44-220ENST00000525688 A0A087WVE0 104 aa2.32□□□□□ -2.04
CD44-220ENST00000525688 TRBV7-4A0A0J9YYF1 115 aa2.32□□□□□ -2.04
CD44-220ENST00000525688 LINC01556Q5JQF7 62 aa2.32□□□□□ -2.04
CD44-220ENST00000525688 LELP1Q5T871 98 aa2.32□□□□□ -2.04
CD44-220ENST00000525688 ZNF625Q96I27 306 aaPredicted RBP2.32□□□□□ -2.04
CD44-220ENST00000525688 PLAC8Q9NZF1 115 aa2.32□□□□□ -2.04
CD44-220ENST00000525688 HSPG2P98160 4391 aa2.31□□□□□ -2.04
CD44-220ENST00000525688 M0QY20 66 aa2.31□□□□□ -2.04
CD44-220ENST00000525688 MGPP08493 103 aa2.31□□□□□ -2.04
CD44-220ENST00000525688 BAGE3Q86Y29 109 aa2.31□□□□□ -2.04
CD44-220ENST00000525688 LINC00846Q9NV44 126 aa2.31□□□□□ -2.04
CD44-220ENST00000525688 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.3□□□□□ -2.04
CD44-220ENST00000525688 LINC00208Q96KT6 92 aa2.3□□□□□ -2.04
CD44-220ENST00000525688 SPRR4Q96PI1 79 aa2.3□□□□□ -2.04
CD44-220ENST00000525688 FAT1Q14517 4588 aa2.3□□□□□ -2.04
CD44-220ENST00000525688 A0A1B0GUT8 65 aa2.29□□□□□ -2.04
CD44-220ENST00000525688 SMIM27A0A1W2PRY6 76 aa2.29□□□□□ -2.04
CD44-220ENST00000525688 KRTAP5-9P26371 169 aa2.29□□□□□ -2.04
CD44-220ENST00000525688 SNURFQ9Y675 71 aa2.29□□□□□ -2.04
CD44-220ENST00000525688 UBR4Q5T4S7 5183 aa2.29□□□□□ -2.04
CD44-220ENST00000525688 DNAH8Q96JB1 4490 aa2.28□□□□□ -2.04
CD44-220ENST00000525688 PP632Q6XCG6 107 aa2.28□□□□□ -2.04
CD44-220ENST00000525688 Q96NJ1 140 aa2.28□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms