RNA–Protein interactions for RNA: ENST00000517097.1

SCARNA3-201, small Cajal body-specific RNA 3, humanhuman

BASIC

Gene SCARNA3, Length 143 nt, Biotype scaRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARNA3-201ENST00000517097 CLTCL1P53675 1640 aa0.13□□□□□ -2.39
SCARNA3-201ENST00000517097 KMT2AQ03164 3969 aa0.13□□□□□ -2.39
SCARNA3-201ENST00000517097 LYSTQ99698 3801 aa0.12□□□□□ -2.39
SCARNA3-201ENST00000517097 COL7A1Q02388 2944 aa0.12□□□□□ -2.39
SCARNA3-201ENST00000517097 SONP18583 2426 aaKnown RBP0.12□□□□□ -2.39
SCARNA3-201ENST00000517097 LINC01546A6NGU7 62 aa0.12□□□□□ -2.39
SCARNA3-201ENST00000517097 TFF3Q07654 80 aa0.12□□□□□ -2.39
SCARNA3-201ENST00000517097 NOP10Q9NPE3 64 aaKnown RBP0.12□□□□□ -2.39
SCARNA3-201ENST00000517097 KAAG1Q9UBP8 84 aa0.12□□□□□ -2.39
SCARNA3-201ENST00000517097 NSD1Q96L73 2696 aaPredicted RBP0.12□□□□□ -2.39
SCARNA3-201ENST00000517097 FAM186AA6NE01 2351 aa0.11□□□□□ -2.39
SCARNA3-201ENST00000517097 SPRR2AP35326 72 aa0.11□□□□□ -2.39
SCARNA3-201ENST00000517097 KRTAP6-2Q3LI66 62 aa0.11□□□□□ -2.39
SCARNA3-201ENST00000517097 WFDC10BQ8IUB3 73 aa0.11□□□□□ -2.39
SCARNA3-201ENST00000517097 HMCN2Q8NDA2 5059 aa0.11□□□□□ -2.39
SCARNA3-201ENST00000517097 MTORP42345 2549 aa0.09□□□□□ -2.39
SCARNA3-201ENST00000517097 SPRR2GQ9BYE4 73 aa0.09□□□□□ -2.4
SCARNA3-201ENST00000517097 STAB1Q9NY15 2570 aa0.09□□□□□ -2.4
SCARNA3-201ENST00000517097 MDN1Q9NU22 5596 aa0.09□□□□□ -2.4
SCARNA3-201ENST00000517097 MUC5BQ9HC84 5762 aaPredicted RBP0.09□□□□□ -2.4
SCARNA3-201ENST00000517097 FLNCQ14315 2725 aa0.08□□□□□ -2.4
SCARNA3-201ENST00000517097 ZANQ9Y493 2812 aa0.08□□□□□ -2.4
SCARNA3-201ENST00000517097 LPAP08519 4548 aa0.08□□□□□ -2.4
SCARNA3-201ENST00000517097 SETD2Q9BYW2 2564 aaPredicted RBP0.07□□□□□ -2.4
SCARNA3-201ENST00000517097 FLNAP21333 2647 aaKnown RBP0.07□□□□□ -2.4
SCARNA3-201ENST00000517097 SMIM2Q9BVW6 85 aa0.07□□□□□ -2.4
SCARNA3-201ENST00000517097 ZZEF1O43149 2961 aa0.06□□□□□ -2.4
SCARNA3-201ENST00000517097 MMP24-AS1A0A0U1RRL7 71 aa0.06□□□□□ -2.4
SCARNA3-201ENST00000517097 M0QY20 66 aa0.06□□□□□ -2.4
SCARNA3-201ENST00000517097 SPRR2EP22531 72 aa0.06□□□□□ -2.4
SCARNA3-201ENST00000517097 NF1P21359 2839 aa0.06□□□□□ -2.4
SCARNA3-201ENST00000517097 COL6A5A8TX70 2615 aa0.06□□□□□ -2.4
SCARNA3-201ENST00000517097 GCN1Q92616 2671 aaKnown RBP0.06□□□□□ -2.4
SCARNA3-201ENST00000517097 LRRK2Q5S007 2527 aa0.06□□□□□ -2.4
SCARNA3-201ENST00000517097 HSPG2P98160 4391 aa0.06□□□□□ -2.4
SCARNA3-201ENST00000517097 PDZD2O15018 2839 aa0.05□□□□□ -2.4
SCARNA3-201ENST00000517097 COL6A3P12111 3177 aa0.05□□□□□ -2.4
SCARNA3-201ENST00000517097 DEFB110Q30KQ9 67 aa0.05□□□□□ -2.4
SCARNA3-201ENST00000517097 TOMM5Q8N4H5 51 aa0.05□□□□□ -2.4
SCARNA3-201ENST00000517097 SVEP1Q4LDE5 3571 aa0.05□□□□□ -2.4
SCARNA3-201ENST00000517097 MUC5ACP98088 5654 aa0.04□□□□□ -2.4
SCARNA3-201ENST00000517097 MT1AP04731 61 aa0.04□□□□□ -2.4
SCARNA3-201ENST00000517097 TENM2Q9NT68 2774 aa0.04□□□□□ -2.4
SCARNA3-201ENST00000517097 TRPM2O94759 1503 aa0.03□□□□□ -2.4
SCARNA3-201ENST00000517097 SRRM2Q9UQ35 2752 aaKnown RBP0.03□□□□□ -2.4
SCARNA3-201ENST00000517097 CCDC168Q8NDH2 2452 aa0.03□□□□□ -2.4
SCARNA3-201ENST00000517097 HECTD4Q9Y4D8 3996 aa0.03□□□□□ -2.4
SCARNA3-201ENST00000517097 ACACBO00763 2458 aa0.03□□□□□ -2.41
SCARNA3-201ENST00000517097 A8MTW9 85 aa0.02□□□□□ -2.41
SCARNA3-201ENST00000517097 TNP1P09430 55 aa0.02□□□□□ -2.41
SCARNA3-201ENST00000517097 ANKHD1Q8IWZ3 2542 aaKnown RBP0.02□□□□□ -2.41
SCARNA3-201ENST00000517097 DMXL1Q9Y485 3027 aa0.01□□□□□ -2.41
SCARNA3-201ENST00000517097 DEFB131AP59861 70 aa0.01□□□□□ -2.41
SCARNA3-201ENST00000517097 ATP7AQ04656 1500 aa0.01□□□□□ -2.41
SCARNA3-201ENST00000517097 KMT2DO14686 5537 aa0.01□□□□□ -2.41
SCARNA3-201ENST00000517097 AHNAKQ09666 5890 aaKnown RBP0.01□□□□□ -2.41
SCARNA3-201ENST00000517097 LRP1BQ9NZR2 4599 aa0.01□□□□□ -2.41
SCARNA3-201ENST00000517097 M0QZ58 72 aa0□□□□□ -2.41
SCARNA3-201ENST00000517097 TGP01266 2768 aa0□□□□□ -2.41
SCARNA3-201ENST00000517097 NBEAL2Q6ZNJ1 2754 aa0□□□□□ -2.41
SCARNA3-201ENST00000517097 SPRR2FQ96RM1 72 aa0□□□□□ -2.41
SCARNA3-201ENST00000517097 A0A0C4DFX4 3053 aa-0□□□□□ -2.41
SCARNA3-201ENST00000517097 EPG5Q9HCE0 2579 aa-0□□□□□ -2.41
SCARNA3-201ENST00000517097 RIF1Q5UIP0 2472 aaKnown RBP-0.01□□□□□ -2.41
SCARNA3-201ENST00000517097 ANKRD11Q6UB99 2663 aaPredicted RBP-0.01□□□□□ -2.41
SCARNA3-201ENST00000517097 TEP1Q99973 2627 aaKnown RBP-0.01□□□□□ -2.41
SCARNA3-201ENST00000517097 NDUFA1O15239 70 aa-0.01□□□□□ -2.41
SCARNA3-201ENST00000517097 CUBNO60494 3623 aa-0.01□□□□□ -2.41
SCARNA3-201ENST00000517097 VPS13BQ7Z7G8 4022 aa-0.01□□□□□ -2.41
SCARNA3-201ENST00000517097 STAB2Q8WWQ8 2551 aa-0.01□□□□□ -2.41
SCARNA3-201ENST00000517097 LRP2P98164 4655 aa-0.02□□□□□ -2.41
SCARNA3-201ENST00000517097 FASNP49327 2511 aaKnown RBP-0.03□□□□□ -2.41
SCARNA3-201ENST00000517097 MYO18BQ8IUG5 2567 aa-0.03□□□□□ -2.41
SCARNA3-201ENST00000517097 SAMD9LQ8IVG5 1584 aa-0.03□□□□□ -2.41
SCARNA3-201ENST00000517097 MAP1AP78559 2803 aaPredicted RBP-0.04□□□□□ -2.42
SCARNA3-201ENST00000517097 PKD1P98161 4303 aa-0.04□□□□□ -2.42
SCARNA3-201ENST00000517097 TACC2O95359 2948 aa-0.04□□□□□ -2.42
SCARNA3-201ENST00000517097 TLN2Q9Y4G6 2542 aa-0.05□□□□□ -2.42
SCARNA3-201ENST00000517097 FLGP20930 4061 aaPredicted RBP-0.05□□□□□ -2.42
SCARNA3-201ENST00000517097 TOP2AP11388 1531 aaKnown RBP-0.05□□□□□ -2.42
SCARNA3-201ENST00000517097 NBEAL1Q6ZS30 2694 aa-0.06□□□□□ -2.42
SCARNA3-201ENST00000517097 POLR2KP53803 58 aaKnown RBP-0.07□□□□□ -2.42
SCARNA3-201ENST00000517097 KRTAP19-7Q3SYF9 63 aa-0.07□□□□□ -2.42
SCARNA3-201ENST00000517097 HIVEP1P15822 2718 aa-0.07□□□□□ -2.42
SCARNA3-201ENST00000517097 KRTAP6-1Q3LI64 71 aa-0.08□□□□□ -2.42
SCARNA3-201ENST00000517097 CLPSL2Q6UWE3 100 aa-0.08□□□□□ -2.42
SCARNA3-201ENST00000517097 KRTAP8-1Q8IUC2 63 aa-0.08□□□□□ -2.42
SCARNA3-201ENST00000517097 SACSQ9NZJ4 4579 aa-0.08□□□□□ -2.42
SCARNA3-201ENST00000517097 PKHD1P08F94 4074 aa-0.08□□□□□ -2.42
SCARNA3-201ENST00000517097 PKHD1L1Q86WI1 4243 aa-0.08□□□□□ -2.42
SCARNA3-201ENST00000517097 KRTAP19-5Q3LI72 72 aa-0.09□□□□□ -2.42
SCARNA3-201ENST00000517097 NBEAQ8NFP9 2946 aa-0.09□□□□□ -2.42
SCARNA3-201ENST00000517097 COL12A1Q99715 3063 aa-0.1□□□□□ -2.42
SCARNA3-201ENST00000517097 LAMA5O15230 3695 aa-0.1□□□□□ -2.42
SCARNA3-201ENST00000517097 MXRA5Q9NR99 2828 aa-0.1□□□□□ -2.43
SCARNA3-201ENST00000517097 ANK3Q12955 4377 aaKnown RBP-0.11□□□□□ -2.43
SCARNA3-201ENST00000517097 MGAM2Q2M2H8 2515 aa-0.12□□□□□ -2.43
SCARNA3-201ENST00000517097 SMR3BP02814 79 aaPredicted RBP-0.12□□□□□ -2.43
SCARNA3-201ENST00000517097 UTP20O75691 2785 aaKnown RBP-0.12□□□□□ -2.43
SCARNA3-201ENST00000517097 KALRNO60229 2985 aa-0.13□□□□□ -2.43
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms