RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 A0A1B0GU69 56 aa6.95□□□□□ -1.3
HDAC4-210ENST00000493582 RTL8CO15255 209 aa6.95□□□□□ -1.3
HDAC4-210ENST00000493582 SPINK6Q6UWN8 80 aa6.95□□□□□ -1.3
HDAC4-210ENST00000493582 DNAH9Q9NYC9 4486 aa6.94□□□□□ -1.3
HDAC4-210ENST00000493582 ALMS1Q8TCU4 4167 aa6.93□□□□□ -1.3
HDAC4-210ENST00000493582 KRTAP13-3Q3SY46 172 aa6.92□□□□□ -1.3
HDAC4-210ENST00000493582 SPATA8Q6RVD6 105 aa6.92□□□□□ -1.3
HDAC4-210ENST00000493582 STAB2Q8WWQ8 2551 aa6.9□□□□□ -1.3
HDAC4-210ENST00000493582 DNAH3Q8TD57 4116 aa6.9□□□□□ -1.31
HDAC4-210ENST00000493582 MIR22HGQ0VDD5 57 aa6.9□□□□□ -1.31
HDAC4-210ENST00000493582 RETNLBQ9BQ08 111 aa6.89□□□□□ -1.31
HDAC4-210ENST00000493582 CSAG1Q6PB30 78 aa6.89□□□□□ -1.31
HDAC4-210ENST00000493582 DMAC1Q96GE9 116 aa6.89□□□□□ -1.31
HDAC4-210ENST00000493582 WWC2-AS2Q96NR7 200 aa6.89□□□□□ -1.31
HDAC4-210ENST00000493582 LINC00483Q53H64 154 aa6.86□□□□□ -1.31
HDAC4-210ENST00000493582 UQCR11O14957 56 aa6.86□□□□□ -1.31
HDAC4-210ENST00000493582 C14orf177Q52M58 125 aa6.85□□□□□ -1.31
HDAC4-210ENST00000493582 MGAM2Q2M2H8 2515 aa6.85□□□□□ -1.31
HDAC4-210ENST00000493582 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.85□□□□□ -1.31
HDAC4-210ENST00000493582 FRAS1Q86XX4 4008 aa6.84□□□□□ -1.31
HDAC4-210ENST00000493582 UBE2DNLQ8IWF7 75 aa6.84□□□□□ -1.31
HDAC4-210ENST00000493582 HUWE1Q7Z6Z7 4374 aaKnown RBP6.84□□□□□ -1.31
HDAC4-210ENST00000493582 DNAH7Q8WXX0 4024 aa6.82□□□□□ -1.32
HDAC4-210ENST00000493582 CIRBP-AS1Q8TBR5 109 aa6.79□□□□□ -1.32
HDAC4-210ENST00000493582 PSORS1C2Q9UIG4 136 aa6.79□□□□□ -1.32
HDAC4-210ENST00000493582 ZNF706Q9Y5V0 76 aaPredicted RBP6.79□□□□□ -1.32
HDAC4-210ENST00000493582 SPACA4Q8TDM5 124 aa6.77□□□□□ -1.33
HDAC4-210ENST00000493582 DNAH8Q96JB1 4490 aa6.76□□□□□ -1.33
HDAC4-210ENST00000493582 ZNF861PO60384 105 aa6.75□□□□□ -1.33
HDAC4-210ENST00000493582 IGKV2-30P06310 120 aa6.75□□□□□ -1.33
HDAC4-210ENST00000493582 FAM229AH3BQW9 127 aa6.74□□□□□ -1.33
HDAC4-210ENST00000493582 IGLV5-52A0A0A0MRZ9 124 aa6.73□□□□□ -1.33
HDAC4-210ENST00000493582 MEGF8Q7Z7M0 2845 aa6.73□□□□□ -1.33
HDAC4-210ENST00000493582 KRTAP24-1Q3LI83 254 aa6.72□□□□□ -1.33
HDAC4-210ENST00000493582 APLNQ9ULZ1 77 aa6.72□□□□□ -1.33
HDAC4-210ENST00000493582 IGKV2D-30A0A075B6S6 120 aa6.71□□□□□ -1.34
HDAC4-210ENST00000493582 SPINK1P00995 79 aa6.7□□□□□ -1.34
HDAC4-210ENST00000493582 TGP01266 2768 aa6.7□□□□□ -1.34
HDAC4-210ENST00000493582 Q6ZRN7 208 aaPredicted RBP6.69□□□□□ -1.34
HDAC4-210ENST00000493582 NBDYA0A0U1RRE5 68 aa6.69□□□□□ -1.34
HDAC4-210ENST00000493582 IGLV7-43P04211 117 aa6.69□□□□□ -1.34
HDAC4-210ENST00000493582 C1orf134Q5TEV5 83 aa6.69□□□□□ -1.34
HDAC4-210ENST00000493582 A0A0A0MQY5 61 aa6.68□□□□□ -1.34
HDAC4-210ENST00000493582 FLG2Q5D862 2391 aaPredicted RBP6.65□□□□□ -1.35
HDAC4-210ENST00000493582 DYNC2H1Q8NCM8 4307 aaKnown RBP6.63□□□□□ -1.35
HDAC4-210ENST00000493582 HECTD4Q9Y4D8 3996 aa6.63□□□□□ -1.35
HDAC4-210ENST00000493582 PLECQ15149 4684 aaKnown RBP6.63□□□□□ -1.35
HDAC4-210ENST00000493582 DNAH17Q9UFH2 4485 aa6.63□□□□□ -1.35
HDAC4-210ENST00000493582 A0A087WTM6 91 aa6.61□□□□□ -1.35
HDAC4-210ENST00000493582 KRTAP16-1A8MUX0 517 aa6.6□□□□□ -1.35
HDAC4-210ENST00000493582 Q8N1X5 172 aa6.6□□□□□ -1.35
HDAC4-210ENST00000493582 SSBP3-AS1Q7Z2R9 100 aa6.59□□□□□ -1.35
HDAC4-210ENST00000493582 FBN3Q75N90 2809 aa6.59□□□□□ -1.36
HDAC4-210ENST00000493582 A8MUU9 505 aa6.59□□□□□ -1.36
HDAC4-210ENST00000493582 KRTAP25-1Q3LHN0 102 aa6.59□□□□□ -1.36
HDAC4-210ENST00000493582 Q6ZSA8 131 aa6.59□□□□□ -1.36
HDAC4-210ENST00000493582 H0YAA0 97 aa6.58□□□□□ -1.36
HDAC4-210ENST00000493582 ROMO1P60602 79 aa6.58□□□□□ -1.36
HDAC4-210ENST00000493582 LINC00304Q8N9R0 145 aa6.58□□□□□ -1.36
HDAC4-210ENST00000493582 CRIPTQ9P021 101 aa6.55□□□□□ -1.36
HDAC4-210ENST00000493582 VPS13DQ5THJ4 4388 aa6.55□□□□□ -1.36
HDAC4-210ENST00000493582 LY6G6CO95867 125 aa6.54□□□□□ -1.36
HDAC4-210ENST00000493582 TYMSOSQ8TAI1 123 aa6.53□□□□□ -1.36
HDAC4-210ENST00000493582 KRTAP13-2Q52LG2 175 aa6.52□□□□□ -1.37
HDAC4-210ENST00000493582 KMT2AQ03164 3969 aa6.5□□□□□ -1.37
HDAC4-210ENST00000493582 A0A1B0GU33 70 aa6.47□□□□□ -1.37
HDAC4-210ENST00000493582 DNAH2Q9P225 4427 aa6.47□□□□□ -1.37
HDAC4-210ENST00000493582 DNAH6Q9C0G6 4158 aa6.45□□□□□ -1.38
HDAC4-210ENST00000493582 STARD9Q9P2P6 4700 aa6.45□□□□□ -1.38
HDAC4-210ENST00000493582 P0C880 135 aa6.43□□□□□ -1.38
HDAC4-210ENST00000493582 NUPR2A6NF83 97 aa6.43□□□□□ -1.38
HDAC4-210ENST00000493582 H1FX-AS1Q4G0G2 97 aa6.41□□□□□ -1.38
HDAC4-210ENST00000493582 DNAH11Q96DT5 4516 aa6.4□□□□□ -1.38
HDAC4-210ENST00000493582 PRKDCP78527 4128 aaKnown RBP6.39□□□□□ -1.39
HDAC4-210ENST00000493582 KRTAP3-1Q9BYR8 98 aa6.36□□□□□ -1.39
HDAC4-210ENST00000493582 LRP1BQ9NZR2 4599 aa6.34□□□□□ -1.39
HDAC4-210ENST00000493582 KRTAP1-4P0C5Y4 121 aa6.34□□□□□ -1.4
HDAC4-210ENST00000493582 DMBT1Q9UGM3 2413 aaPredicted RBP6.33□□□□□ -1.4
HDAC4-210ENST00000493582 K7ERS5 55 aa6.32□□□□□ -1.4
HDAC4-210ENST00000493582 DNHD1Q96M86 4753 aa6.32□□□□□ -1.4
HDAC4-210ENST00000493582 KRTAP10-2P60368 255 aa6.32□□□□□ -1.4
HDAC4-210ENST00000493582 KRTAP21-3Q3LHN1 58 aa6.31□□□□□ -1.4
HDAC4-210ENST00000493582 COX6B2Q6YFQ2 88 aa6.3□□□□□ -1.4
HDAC4-210ENST00000493582 DNAH5Q8TE73 4624 aa6.28□□□□□ -1.4
HDAC4-210ENST00000493582 VPS13BQ7Z7G8 4022 aa6.27□□□□□ -1.41
HDAC4-210ENST00000493582 C9orf92A6NGG3 77 aa6.26□□□□□ -1.41
HDAC4-210ENST00000493582 SPINT4Q6UDR6 99 aa6.26□□□□□ -1.41
HDAC4-210ENST00000493582 TPRXLQ17RH7 258 aa6.23□□□□□ -1.41
HDAC4-210ENST00000493582 KRTAP10-1P60331 282 aa6.22□□□□□ -1.41
HDAC4-210ENST00000493582 A0A0D9SG42 100 aa6.2□□□□□ -1.42
HDAC4-210ENST00000493582 C10orf95Q9H7T3 257 aa6.2□□□□□ -1.42
HDAC4-210ENST00000493582 FAT2Q9NYQ8 4349 aa6.18□□□□□ -1.42
HDAC4-210ENST00000493582 NDUFAF8A1L188 74 aa6.18□□□□□ -1.42
HDAC4-210ENST00000493582 RPL37P61927 97 aaKnown RBP6.18□□□□□ -1.42
HDAC4-210ENST00000493582 KRTAP13-4Q3LI77 160 aa6.16□□□□□ -1.42
HDAC4-210ENST00000493582 C20orf166-AS1Q96NR2 134 aa6.15□□□□□ -1.42
HDAC4-210ENST00000493582 PKD1P98161 4303 aa6.13□□□□□ -1.43
HDAC4-210ENST00000493582 KRTAP10-6P60371 365 aaPredicted RBP6.12□□□□□ -1.43
HDAC4-210ENST00000493582 KRTAP15-1Q3LI76 137 aa6.1□□□□□ -1.43
HDAC4-210ENST00000493582 RPS29P62273 56 aaKnown RBP6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms