RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 MYO3AQ8NEV4 1616 aa-0.75□□□□□ -2.53
SCN1A-206ENST00000491429 ABCA5Q8WWZ7 1642 aa-0.75□□□□□ -2.53
SCN1A-206ENST00000491429 MYH7P12883 1935 aa-0.76□□□□□ -2.53
SCN1A-206ENST00000491429 TRBV7-7A0A0K0K1E9 115 aa-0.76□□□□□ -2.53
SCN1A-206ENST00000491429 A0A1B0GV90 55 aa-0.76□□□□□ -2.53
SCN1A-206ENST00000491429 K7EP34 96 aa-0.76□□□□□ -2.53
SCN1A-206ENST00000491429 ARMS2P0C7Q2 107 aa-0.76□□□□□ -2.53
SCN1A-206ENST00000491429 AKAIN1P0CW23 69 aa-0.76□□□□□ -2.53
SCN1A-206ENST00000491429 COX7BP24311 80 aa-0.76□□□□□ -2.53
SCN1A-206ENST00000491429 LMO7Q8WWI1 1683 aa-0.76□□□□□ -2.53
SCN1A-206ENST00000491429 KIF20BQ96Q89 1820 aa-0.76□□□□□ -2.53
SCN1A-206ENST00000491429 ANKRD36BQ8N2N9 1353 aa-0.77□□□□□ -2.53
SCN1A-206ENST00000491429 TRBV25-1A0A075B6N4 114 aa-0.77□□□□□ -2.53
SCN1A-206ENST00000491429 TRAV21A0A0B4J279 112 aa-0.77□□□□□ -2.53
SCN1A-206ENST00000491429 A0A1B0GWA3 101 aa-0.77□□□□□ -2.53
SCN1A-206ENST00000491429 C20orf202A1L168 122 aa-0.77□□□□□ -2.53
SCN1A-206ENST00000491429 LINC00587B1AMM8 73 aa-0.77□□□□□ -2.53
SCN1A-206ENST00000491429 MPC2O95563 127 aa-0.77□□□□□ -2.53
SCN1A-206ENST00000491429 IAPPP10997 89 aa-0.77□□□□□ -2.53
SCN1A-206ENST00000491429 CLPSL2Q6UWE3 100 aa-0.77□□□□□ -2.53
SCN1A-206ENST00000491429 TRGV9Q99603 122 aa-0.77□□□□□ -2.53
SCN1A-206ENST00000491429 MANBALQ9NQG1 85 aa-0.77□□□□□ -2.53
SCN1A-206ENST00000491429 UBE2D4Q9Y2X8 147 aa-0.77□□□□□ -2.53
SCN1A-206ENST00000491429 DUOX1Q9NRD9 1551 aa-0.78□□□□□ -2.53
SCN1A-206ENST00000491429 INO80Q9ULG1 1556 aaPredicted RBP-0.78□□□□□ -2.53
SCN1A-206ENST00000491429 CLIP1P30622 1438 aa-0.78□□□□□ -2.53
SCN1A-206ENST00000491429 RRBP1Q9P2E9 1410 aaKnown RBP-0.78□□□□□ -2.53
SCN1A-206ENST00000491429 F8WEM9 126 aa-0.78□□□□□ -2.53
SCN1A-206ENST00000491429 TNP1P09430 55 aa-0.78□□□□□ -2.53
SCN1A-206ENST00000491429 IFI6P09912 130 aa-0.78□□□□□ -2.53
SCN1A-206ENST00000491429 GNG11P61952 73 aa-0.78□□□□□ -2.53
SCN1A-206ENST00000491429 WT1-ASQ06250 92 aa-0.78□□□□□ -2.53
SCN1A-206ENST00000491429 WHAMMP3Q1A5X7 153 aa-0.78□□□□□ -2.53
SCN1A-206ENST00000491429 C9orf153Q5TBE3 101 aa-0.78□□□□□ -2.53
SCN1A-206ENST00000491429 C20orf78Q9BR46 151 aa-0.78□□□□□ -2.53
SCN1A-206ENST00000491429 PRO1854Q9UHT4 67 aa-0.78□□□□□ -2.53
SCN1A-206ENST00000491429 FAM208AQ9UK61 1670 aaKnown RBP-0.78□□□□□ -2.53
SCN1A-206ENST00000491429 MROH1Q8NDA8 1641 aa-0.78□□□□□ -2.54
SCN1A-206ENST00000491429 ABCC6O95255 1503 aa-0.79□□□□□ -2.54
SCN1A-206ENST00000491429 ABCC10Q5T3U5 1492 aa-0.79□□□□□ -2.54
SCN1A-206ENST00000491429 CCDC141Q6ZP82 1450 aa-0.79□□□□□ -2.54
SCN1A-206ENST00000491429 ROCK2O75116 1388 aaKnown RBP-0.79□□□□□ -2.54
SCN1A-206ENST00000491429 KTN1Q86UP2 1357 aaKnown RBP-0.79□□□□□ -2.54
SCN1A-206ENST00000491429 MYH4Q9Y623 1939 aa-0.79□□□□□ -2.54
SCN1A-206ENST00000491429 TRAV30A0A087WSZ9 112 aa-0.79□□□□□ -2.54
SCN1A-206ENST00000491429 SPTY2D1-AS1A0A0U1RR47 76 aa-0.79□□□□□ -2.54
SCN1A-206ENST00000491429 MMP24-AS1A0A0U1RRL7 71 aa-0.79□□□□□ -2.54
SCN1A-206ENST00000491429 SFTA3P0C7M3 94 aa-0.79□□□□□ -2.54
SCN1A-206ENST00000491429 SAA2P0DJI9 122 aaPredicted RBP-0.79□□□□□ -2.54
SCN1A-206ENST00000491429 SNCAP37840 140 aa-0.79□□□□□ -2.54
SCN1A-206ENST00000491429 S100A12P80511 92 aa-0.79□□□□□ -2.54
SCN1A-206ENST00000491429 TDRG1Q3Y452 100 aa-0.79□□□□□ -2.54
SCN1A-206ENST00000491429 PSMG4Q5JS54 123 aa-0.79□□□□□ -2.54
SCN1A-206ENST00000491429 C1orf54Q8WWF1 131 aa-0.79□□□□□ -2.54
SCN1A-206ENST00000491429 PP6455Q8WZ26 134 aa-0.79□□□□□ -2.54
SCN1A-206ENST00000491429 ABCC3O15438 1527 aa-0.79□□□□□ -2.54
SCN1A-206ENST00000491429 ARHGAP5Q13017 1502 aa-0.79□□□□□ -2.54
SCN1A-206ENST00000491429 ABCC2Q92887 1545 aa-0.79□□□□□ -2.54
SCN1A-206ENST00000491429 CD163L1Q9NR16 1453 aa-0.8□□□□□ -2.54
SCN1A-206ENST00000491429 UBE2L5PA0A1B0GUS4 154 aa-0.8□□□□□ -2.54
SCN1A-206ENST00000491429 A8MTW9 85 aa-0.8□□□□□ -2.54
SCN1A-206ENST00000491429 TMEM262E9PQX1 116 aa-0.8□□□□□ -2.54
SCN1A-206ENST00000491429 H3BQ15 152 aa-0.8□□□□□ -2.54
SCN1A-206ENST00000491429 CCL22O00626 93 aa-0.8□□□□□ -2.54
SCN1A-206ENST00000491429 UBE2L3P68036 154 aaKnown RBP-0.8□□□□□ -2.54
SCN1A-206ENST00000491429 MROH2BQ7Z745 1585 aa-0.8□□□□□ -2.54
SCN1A-206ENST00000491429 CCDC18Q5T9S5 1454 aa-0.8□□□□□ -2.54
SCN1A-206ENST00000491429 IQCF6A8MYZ5 107 aa-0.81□□□□□ -2.54
SCN1A-206ENST00000491429 F6UZH7 168 aa-0.81□□□□□ -2.54
SCN1A-206ENST00000491429 DLEU1O43261 78 aa-0.81□□□□□ -2.54
SCN1A-206ENST00000491429 SNAPC5O75971 98 aa-0.81□□□□□ -2.54
SCN1A-206ENST00000491429 TRAPPC2P0DI81 140 aa-0.81□□□□□ -2.54
SCN1A-206ENST00000491429 TRAPPC2BP0DI82 140 aa-0.81□□□□□ -2.54
SCN1A-206ENST00000491429 PRO1933Q9H354 126 aa-0.81□□□□□ -2.54
SCN1A-206ENST00000491429 EFCAB5A4FU69 1503 aa-0.81□□□□□ -2.54
SCN1A-206ENST00000491429 ARFGEF2Q9Y6D5 1785 aa-0.82□□□□□ -2.54
SCN1A-206ENST00000491429 CRYM-AS1A6NIL9 109 aa-0.82□□□□□ -2.54
SCN1A-206ENST00000491429 H3BQF6 201 aa-0.82□□□□□ -2.54
SCN1A-206ENST00000491429 GNGT2O14610 69 aa-0.82□□□□□ -2.54
SCN1A-206ENST00000491429 HMGN1P05114 100 aa-0.82□□□□□ -2.54
SCN1A-206ENST00000491429 GNGT1P63211 74 aa-0.82□□□□□ -2.54
SCN1A-206ENST00000491429 SERP2Q8N6R1 65 aa-0.82□□□□□ -2.54
SCN1A-206ENST00000491429 C14orf144Q96I85 54 aa-0.82□□□□□ -2.54
SCN1A-206ENST00000491429 GAFA1Q96PS6 74 aa-0.82□□□□□ -2.54
SCN1A-206ENST00000491429 IER3IP1Q9Y5U9 82 aa-0.82□□□□□ -2.54
SCN1A-206ENST00000491429 VPS8Q8N3P4 1428 aa-0.82□□□□□ -2.54
SCN1A-206ENST00000491429 ABCA9Q8IUA7 1624 aa-0.82□□□□□ -2.54
SCN1A-206ENST00000491429 LMTK2Q8IWU2 1503 aa-0.83□□□□□ -2.54
SCN1A-206ENST00000491429 FAM24AA6NFZ4 105 aa-0.83□□□□□ -2.54
SCN1A-206ENST00000491429 M0QZ58 72 aa-0.83□□□□□ -2.54
SCN1A-206ENST00000491429 CORTO00230 105 aa-0.83□□□□□ -2.54
SCN1A-206ENST00000491429 LEPROTL1O95214 131 aa-0.83□□□□□ -2.54
SCN1A-206ENST00000491429 ACYP1P07311 99 aa-0.83□□□□□ -2.54
SCN1A-206ENST00000491429 COX6CP09669 75 aa-0.83□□□□□ -2.54
SCN1A-206ENST00000491429 C3orf79P0CE67 100 aa-0.83□□□□□ -2.54
SCN1A-206ENST00000491429 NMSQ5H8A3 153 aa-0.83□□□□□ -2.54
SCN1A-206ENST00000491429 NCMAPQ5T1S8 102 aa-0.83□□□□□ -2.54
SCN1A-206ENST00000491429 C12orf57Q99622 126 aa-0.83□□□□□ -2.54
SCN1A-206ENST00000491429 CGREF1Q99674 301 aa-0.83□□□□□ -2.54
SCN1A-206ENST00000491429 AKAP12Q02952 1782 aa-0.83□□□□□ -2.54
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms