RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 NOTCH1P46531 2555 aa3.75□□□□□ -1.81
VPS13D-209ENST00000487188 SPATA8Q6RVD6 105 aa3.75□□□□□ -1.81
VPS13D-209ENST00000487188 A0A087X002 238 aa3.74□□□□□ -1.81
VPS13D-209ENST00000487188 NOTCH2NLQ7Z3S9 236 aa3.74□□□□□ -1.81
VPS13D-209ENST00000487188 CIRBP-AS1Q8TBR5 109 aa3.74□□□□□ -1.81
VPS13D-209ENST00000487188 Q5W150 140 aa3.73□□□□□ -1.81
VPS13D-209ENST00000487188 DMAC1Q96GE9 116 aa3.73□□□□□ -1.81
VPS13D-209ENST00000487188 RTL8CO15255 209 aa3.73□□□□□ -1.81
VPS13D-209ENST00000487188 ANAPC11Q9NYG5 84 aa3.73□□□□□ -1.81
VPS13D-209ENST00000487188 FAM229AH3BQW9 127 aa3.73□□□□□ -1.81
VPS13D-209ENST00000487188 SPINK1P00995 79 aa3.73□□□□□ -1.81
VPS13D-209ENST00000487188 MEGF8Q7Z7M0 2845 aa3.72□□□□□ -1.81
VPS13D-209ENST00000487188 IGKV2D-30A0A075B6S6 120 aa3.72□□□□□ -1.81
VPS13D-209ENST00000487188 IGKV2-30P06310 120 aa3.72□□□□□ -1.81
VPS13D-209ENST00000487188 TENM3Q9P273 2699 aa3.71□□□□□ -1.81
VPS13D-209ENST00000487188 KRTAP1-5Q9BYS1 174 aa3.7□□□□□ -1.82
VPS13D-209ENST00000487188 C1orf134Q5TEV5 83 aa3.7□□□□□ -1.82
VPS13D-209ENST00000487188 DNAH9Q9NYC9 4486 aa3.69□□□□□ -1.82
VPS13D-209ENST00000487188 WWC2-AS2Q96NR7 200 aa3.69□□□□□ -1.82
VPS13D-209ENST00000487188 SRRM2Q9UQ35 2752 aaKnown RBP3.68□□□□□ -1.82
VPS13D-209ENST00000487188 LINC00483Q53H64 154 aa3.67□□□□□ -1.82
VPS13D-209ENST00000487188 KRTAP13-1Q8IUC0 172 aa3.67□□□□□ -1.82
VPS13D-209ENST00000487188 PANO1I0J062 215 aa3.67□□□□□ -1.82
VPS13D-209ENST00000487188 PSORS1C2Q9UIG4 136 aa3.66□□□□□ -1.82
VPS13D-209ENST00000487188 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.66□□□□□ -1.82
VPS13D-209ENST00000487188 ZNF861PO60384 105 aa3.66□□□□□ -1.82
VPS13D-209ENST00000487188 LY6G6CO95867 125 aa3.66□□□□□ -1.82
VPS13D-209ENST00000487188 K7ERS5 55 aa3.64□□□□□ -1.83
VPS13D-209ENST00000487188 HUWE1Q7Z6Z7 4374 aaKnown RBP3.64□□□□□ -1.83
VPS13D-209ENST00000487188 IGLV7-43P04211 117 aa3.64□□□□□ -1.83
VPS13D-209ENST00000487188 SPACA4Q8TDM5 124 aa3.64□□□□□ -1.83
VPS13D-209ENST00000487188 DNAH7Q8WXX0 4024 aa3.64□□□□□ -1.83
VPS13D-209ENST00000487188 KRTAP13-3Q3SY46 172 aa3.63□□□□□ -1.83
VPS13D-209ENST00000487188 IGLV5-52A0A0A0MRZ9 124 aa3.63□□□□□ -1.83
VPS13D-209ENST00000487188 NBDYA0A0U1RRE5 68 aa3.63□□□□□ -1.83
VPS13D-209ENST00000487188 TENM2Q9NT68 2774 aa3.62□□□□□ -1.83
VPS13D-209ENST00000487188 COL7A1Q02388 2944 aa3.62□□□□□ -1.83
VPS13D-209ENST00000487188 Q8N1X5 172 aa3.61□□□□□ -1.83
VPS13D-209ENST00000487188 KRTAP25-1Q3LHN0 102 aa3.61□□□□□ -1.83
VPS13D-209ENST00000487188 SSBP3-AS1Q7Z2R9 100 aa3.61□□□□□ -1.83
VPS13D-209ENST00000487188 NUPR2A6NF83 97 aa3.6□□□□□ -1.83
VPS13D-209ENST00000487188 APLNQ9ULZ1 77 aa3.6□□□□□ -1.83
VPS13D-209ENST00000487188 ROMO1P60602 79 aa3.59□□□□□ -1.83
VPS13D-209ENST00000487188 CRIPTQ9P021 101 aa3.58□□□□□ -1.84
VPS13D-209ENST00000487188 TGP01266 2768 aa3.58□□□□□ -1.84
VPS13D-209ENST00000487188 LYSTQ99698 3801 aa3.58□□□□□ -1.84
VPS13D-209ENST00000487188 A0A087WTM6 91 aa3.57□□□□□ -1.84
VPS13D-209ENST00000487188 A0A1B0GU33 70 aa3.57□□□□□ -1.84
VPS13D-209ENST00000487188 FLG2Q5D862 2391 aaPredicted RBP3.57□□□□□ -1.84
VPS13D-209ENST00000487188 CSMD3Q7Z407 3707 aa3.56□□□□□ -1.84
VPS13D-209ENST00000487188 KMT2CQ8NEZ4 4911 aaKnown RBP3.56□□□□□ -1.84
VPS13D-209ENST00000487188 SPINT4Q6UDR6 99 aa3.56□□□□□ -1.84
VPS13D-209ENST00000487188 DYNC2H1Q8NCM8 4307 aaKnown RBP3.56□□□□□ -1.84
VPS13D-209ENST00000487188 A8MUU9 505 aa3.55□□□□□ -1.84
VPS13D-209ENST00000487188 STAB2Q8WWQ8 2551 aa3.55□□□□□ -1.84
VPS13D-209ENST00000487188 LINC00304Q8N9R0 145 aa3.54□□□□□ -1.84
VPS13D-209ENST00000487188 STARD9Q9P2P6 4700 aa3.54□□□□□ -1.84
VPS13D-209ENST00000487188 SACSQ9NZJ4 4579 aa3.54□□□□□ -1.84
VPS13D-209ENST00000487188 RYR3Q15413 4870 aa3.53□□□□□ -1.84
VPS13D-209ENST00000487188 H0YAA0 97 aa3.53□□□□□ -1.84
VPS13D-209ENST00000487188 DNAH1Q9P2D7 4330 aa3.52□□□□□ -1.85
VPS13D-209ENST00000487188 Q6ZRN7 208 aaPredicted RBP3.52□□□□□ -1.85
VPS13D-209ENST00000487188 Q6ZSA8 131 aa3.52□□□□□ -1.85
VPS13D-209ENST00000487188 H1FX-AS1Q4G0G2 97 aa3.52□□□□□ -1.85
VPS13D-209ENST00000487188 ALMS1Q8TCU4 4167 aa3.51□□□□□ -1.85
VPS13D-209ENST00000487188 TYMSOSQ8TAI1 123 aa3.5□□□□□ -1.85
VPS13D-209ENST00000487188 PLECQ15149 4684 aaKnown RBP3.5□□□□□ -1.85
VPS13D-209ENST00000487188 LCE2DQ5TA82 110 aaPredicted RBP3.5□□□□□ -1.85
VPS13D-209ENST00000487188 HYDINQ4G0P3 5121 aa3.49□□□□□ -1.85
VPS13D-209ENST00000487188 KRTAP16-1A8MUX0 517 aa3.49□□□□□ -1.85
VPS13D-209ENST00000487188 RYR2Q92736 4967 aa3.49□□□□□ -1.85
VPS13D-209ENST00000487188 DNAH10Q8IVF4 4471 aa3.47□□□□□ -1.85
VPS13D-209ENST00000487188 KRTAP13-2Q52LG2 175 aa3.46□□□□□ -1.86
VPS13D-209ENST00000487188 DNAH6Q9C0G6 4158 aa3.46□□□□□ -1.86
VPS13D-209ENST00000487188 KMT2AQ03164 3969 aa3.45□□□□□ -1.86
VPS13D-209ENST00000487188 VPS13DQ5THJ4 4388 aa3.44□□□□□ -1.86
VPS13D-209ENST00000487188 A0A0D9SG42 100 aa3.44□□□□□ -1.86
VPS13D-209ENST00000487188 C9orf92A6NGG3 77 aa3.43□□□□□ -1.86
VPS13D-209ENST00000487188 P0C880 135 aa3.43□□□□□ -1.86
VPS13D-209ENST00000487188 FRAS1Q86XX4 4008 aa3.43□□□□□ -1.86
VPS13D-209ENST00000487188 DMBT1Q9UGM3 2413 aaPredicted RBP3.43□□□□□ -1.86
VPS13D-209ENST00000487188 NDUFAF8A1L188 74 aa3.42□□□□□ -1.86
VPS13D-209ENST00000487188 RPL37P61927 97 aaKnown RBP3.42□□□□□ -1.86
VPS13D-209ENST00000487188 COX6B2Q6YFQ2 88 aa3.42□□□□□ -1.86
VPS13D-209ENST00000487188 DNAH2Q9P225 4427 aa3.4□□□□□ -1.86
VPS13D-209ENST00000487188 EPPK1P58107 5090 aaKnown RBP3.39□□□□□ -1.87
VPS13D-209ENST00000487188 FAT2Q9NYQ8 4349 aa3.39□□□□□ -1.87
VPS13D-209ENST00000487188 C20orf166-AS1Q96NR2 134 aa3.37□□□□□ -1.87
VPS13D-209ENST00000487188 DNAH17Q9UFH2 4485 aa3.37□□□□□ -1.87
VPS13D-209ENST00000487188 HECTD4Q9Y4D8 3996 aa3.36□□□□□ -1.87
VPS13D-209ENST00000487188 J3QL48 77 aa3.36□□□□□ -1.87
VPS13D-209ENST00000487188 C10orf95Q9H7T3 257 aa3.36□□□□□ -1.87
VPS13D-209ENST00000487188 KRTAP10-2P60368 255 aa3.36□□□□□ -1.87
VPS13D-209ENST00000487188 DNAH8Q96JB1 4490 aa3.35□□□□□ -1.87
VPS13D-209ENST00000487188 PKD1P98161 4303 aa3.34□□□□□ -1.87
VPS13D-209ENST00000487188 KRTAP1-4P0C5Y4 121 aa3.34□□□□□ -1.87
VPS13D-209ENST00000487188 TPRXLQ17RH7 258 aa3.33□□□□□ -1.88
VPS13D-209ENST00000487188 DNAH11Q96DT5 4516 aa3.33□□□□□ -1.88
VPS13D-209ENST00000487188 BIRC6Q9NR09 4857 aa3.32□□□□□ -1.88
VPS13D-209ENST00000487188 KRTAP10-1P60331 282 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 144 ms