RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 LCE6AA0A183 80 aa-1.78□□□□□ -2.69
VPS50-217ENST00000485140 TNP1P09430 55 aa-1.78□□□□□ -2.69
VPS50-217ENST00000485140 IAPPP10997 89 aa-1.78□□□□□ -2.69
VPS50-217ENST00000485140 CEP170BQ9Y4F5 1589 aaPredicted RBP-1.78□□□□□ -2.69
VPS50-217ENST00000485140 CDC42BPAQ5VT25 1732 aa-1.78□□□□□ -2.69
VPS50-217ENST00000485140 DOT1LQ8TEK3 1739 aa-1.79□□□□□ -2.7
VPS50-217ENST00000485140 MMP24-AS1A0A0U1RRL7 71 aa-1.79□□□□□ -2.7
VPS50-217ENST00000485140 MYMXA0A1B0GTQ4 84 aa-1.79□□□□□ -2.7
VPS50-217ENST00000485140 ACYP1P07311 99 aa-1.79□□□□□ -2.7
VPS50-217ENST00000485140 DCHS1Q96JQ0 3298 aa-1.79□□□□□ -2.7
VPS50-217ENST00000485140 EP400Q96L91 3159 aa-1.8□□□□□ -2.7
VPS50-217ENST00000485140 ATP6V1G2-DDX39BF2Z307 99 aa-1.8□□□□□ -2.7
VPS50-217ENST00000485140 SPEGQ15772 3267 aa-1.8□□□□□ -2.7
VPS50-217ENST00000485140 IFI27P40305 119 aaPredicted RBP-1.81□□□□□ -2.7
VPS50-217ENST00000485140 NCMAPQ5T1S8 102 aa-1.81□□□□□ -2.7
VPS50-217ENST00000485140 CDC42BPGQ6DT37 1551 aa-1.81□□□□□ -2.7
VPS50-217ENST00000485140 CEP350Q5VT06 3117 aa-1.82□□□□□ -2.7
VPS50-217ENST00000485140 UBR1Q8IWV7 1749 aa-1.82□□□□□ -2.7
VPS50-217ENST00000485140 LOC400499M0QZD8 3231 aa-1.82□□□□□ -2.7
VPS50-217ENST00000485140 M0R143 59 aa-1.82□□□□□ -2.7
VPS50-217ENST00000485140 C20orf78Q9BR46 151 aa-1.82□□□□□ -2.7
VPS50-217ENST00000485140 CEBPZOSA8MTT3 80 aa-1.83□□□□□ -2.7
VPS50-217ENST00000485140 CEP162Q5TB80 1403 aa-1.83□□□□□ -2.7
VPS50-217ENST00000485140 URB2Q14146 1524 aaKnown RBP-1.84□□□□□ -2.7
VPS50-217ENST00000485140 TIMM8BQ9Y5J9 83 aaPredicted RBP-1.84□□□□□ -2.7
VPS50-217ENST00000485140 NCOA2Q15596 1464 aa-1.84□□□□□ -2.7
VPS50-217ENST00000485140 DDX60LQ5H9U9 1706 aaKnown RBP-1.85□□□□□ -2.71
VPS50-217ENST00000485140 RABAC1Q9UI14 185 aa-1.85□□□□□ -2.71
VPS50-217ENST00000485140 UMAD1C9J7I0 102 aa-1.86□□□□□ -2.71
VPS50-217ENST00000485140 SNRPFP62306 86 aaKnown RBP-1.86□□□□□ -2.71
VPS50-217ENST00000485140 DIP2BQ9P265 1576 aa-1.86□□□□□ -2.71
VPS50-217ENST00000485140 CCDC88BA6NC98 1476 aa-1.87□□□□□ -2.71
VPS50-217ENST00000485140 LINC00643Q86TS7 51 aa-1.87□□□□□ -2.71
VPS50-217ENST00000485140 ANKRD26Q9UPS8 1709 aa-1.87□□□□□ -2.71
VPS50-217ENST00000485140 ANKRD36CQ5JPF3 1778 aa-1.87□□□□□ -2.71
VPS50-217ENST00000485140 WDFY4Q6ZS81 3184 aa-1.88□□□□□ -2.71
VPS50-217ENST00000485140 THOC2Q8NI27 1593 aaKnown RBP-1.88□□□□□ -2.71
VPS50-217ENST00000485140 ARFGEF2Q9Y6D5 1785 aa-1.88□□□□□ -2.71
VPS50-217ENST00000485140 CCNB3Q8WWL7 1395 aa-1.88□□□□□ -2.71
VPS50-217ENST00000485140 IGLV5-48A0A075B6I7 105 aa-1.89□□□□□ -2.71
VPS50-217ENST00000485140 NDUFA4O00483 81 aa-1.89□□□□□ -2.71
VPS50-217ENST00000485140 ZNF831Q5JPB2 1677 aa-1.9□□□□□ -2.71
VPS50-217ENST00000485140 TMEM131LA2VDJ0 1609 aa-1.91□□□□□ -2.71
VPS50-217ENST00000485140 PYY3Q5JQD4 70 aa-1.91□□□□□ -2.72
VPS50-217ENST00000485140 TOGARAM1Q9Y4F4 1720 aa-1.91□□□□□ -2.72
VPS50-217ENST00000485140 MRPL33O75394 65 aaKnown RBP-1.92□□□□□ -2.72
VPS50-217ENST00000485140 ITSN1Q15811 1721 aa-1.92□□□□□ -2.72
VPS50-217ENST00000485140 AKAP12Q02952 1782 aa-1.93□□□□□ -2.72
VPS50-217ENST00000485140 DEFB131BA0A096LNP1 70 aa-1.93□□□□□ -2.72
VPS50-217ENST00000485140 DEFB4AO15263 64 aa-1.93□□□□□ -2.72
VPS50-217ENST00000485140 HMGA1P17096 107 aaKnown RBP-1.93□□□□□ -2.72
VPS50-217ENST00000485140 WT1-ASQ06250 92 aa-1.94□□□□□ -2.72
VPS50-217ENST00000485140 SNHG12Q9BXW3 62 aa-1.94□□□□□ -2.72
VPS50-217ENST00000485140 CFAP54Q96N23 3096 aa-1.94□□□□□ -2.72
VPS50-217ENST00000485140 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-1.95□□□□□ -2.72
VPS50-217ENST00000485140 PLCH1Q4KWH8 1693 aa-1.95□□□□□ -2.72
VPS50-217ENST00000485140 PKIAP61925 76 aa-1.95□□□□□ -2.72
VPS50-217ENST00000485140 S100A16Q96FQ6 103 aaKnown RBP-1.95□□□□□ -2.72
VPS50-217ENST00000485140 VPS8Q8N3P4 1428 aa-1.95□□□□□ -2.72
VPS50-217ENST00000485140 PIK3C2BO00750 1634 aa-1.95□□□□□ -2.72
VPS50-217ENST00000485140 PARP4Q9UKK3 1724 aaKnown RBP-1.96□□□□□ -2.72
VPS50-217ENST00000485140 LINC01546A6NGU7 62 aa-1.96□□□□□ -2.72
VPS50-217ENST00000485140 RPS29P62273 56 aaKnown RBP-1.96□□□□□ -2.72
VPS50-217ENST00000485140 KIAA0586Q9BVV6 1533 aa-1.96□□□□□ -2.72
VPS50-217ENST00000485140 NREPQ16612 68 aa-1.97□□□□□ -2.72
VPS50-217ENST00000485140 NOP10Q9NPE3 64 aaKnown RBP-1.97□□□□□ -2.72
VPS50-217ENST00000485140 PVALEFA0A1B0GWK0 134 aa-1.98□□□□□ -2.73
VPS50-217ENST00000485140 S100A8P05109 93 aa-1.98□□□□□ -2.73
VPS50-217ENST00000485140 LY75O60449 1722 aa-1.98□□□□□ -2.73
VPS50-217ENST00000485140 WDFY3Q8IZQ1 3526 aa-1.98□□□□□ -2.73
VPS50-217ENST00000485140 MUC3AQ02505 3323 aa-1.98□□□□□ -2.73
VPS50-217ENST00000485140 VCANP13611 3396 aa-1.99□□□□□ -2.73
VPS50-217ENST00000485140 ATP5EP2Q5VTU8 51 aa-1.99□□□□□ -2.73
VPS50-217ENST00000485140 Q9H521 79 aa-1.99□□□□□ -2.73
VPS50-217ENST00000485140 MKI67P46013 3256 aaKnown RBP-1.99□□□□□ -2.73
VPS50-217ENST00000485140 ZC3H13Q5T200 1668 aaKnown RBP-1.99□□□□□ -2.73
VPS50-217ENST00000485140 SZT2Q5T011 3432 aa-2□□□□□ -2.73
VPS50-217ENST00000485140 VPS13CQ709C8 3753 aa-2□□□□□ -2.73
VPS50-217ENST00000485140 KANTRA0A1W2PQU2 76 aa-2□□□□□ -2.73
VPS50-217ENST00000485140 BVES-AS1Q5T3Y7 98 aa-2□□□□□ -2.73
VPS50-217ENST00000485140 MAP3K4Q9Y6R4 1608 aa-2□□□□□ -2.73
VPS50-217ENST00000485140 USP34Q70CQ2 3546 aa-2□□□□□ -2.73
VPS50-217ENST00000485140 MAST1Q9Y2H9 1570 aa-2.01□□□□□ -2.73
VPS50-217ENST00000485140 KIF14Q15058 1648 aa-2.01□□□□□ -2.73
VPS50-217ENST00000485140 ABCC3O15438 1527 aa-2.01□□□□□ -2.73
VPS50-217ENST00000485140 ITSN2Q9NZM3 1697 aa-2.02□□□□□ -2.73
VPS50-217ENST00000485140 H3BUA1 57 aa-2.02□□□□□ -2.73
VPS50-217ENST00000485140 HFM1A2PYH4 1435 aa-2.02□□□□□ -2.73
VPS50-217ENST00000485140 ASXL1Q8IXJ9 1541 aa-2.02□□□□□ -2.73
VPS50-217ENST00000485140 A0A087WXM4 84 aa-2.03□□□□□ -2.73
VPS50-217ENST00000485140 M0QZ58 72 aa-2.03□□□□□ -2.73
VPS50-217ENST00000485140 UNC80Q8N2C7 3258 aa-2.03□□□□□ -2.73
VPS50-217ENST00000485140 CFAP43Q8NDM7 1665 aa-2.03□□□□□ -2.73
VPS50-217ENST00000485140 SPART-AS1P0CW21 52 aa-2.04□□□□□ -2.74
VPS50-217ENST00000485140 UBL5Q9BZL1 73 aa-2.04□□□□□ -2.74
VPS50-217ENST00000485140 PEG3Q9GZU2 1588 aa-2.04□□□□□ -2.74
VPS50-217ENST00000485140 RICTORQ6R327 1708 aa-2.05□□□□□ -2.74
VPS50-217ENST00000485140 KIF1AQ12756 1690 aa-2.05□□□□□ -2.74
VPS50-217ENST00000485140 V9GYS6 101 aa-2.05□□□□□ -2.74
VPS50-217ENST00000485140 CEP250Q9BV73 2442 aa-2.05□□□□□ -2.74
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms