RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 FAM229BQ4G0N7 80 aa2.38□□□□□ -2.03
TMEM39A-204ENST00000468545 IGFL1Q6UW32 110 aa2.38□□□□□ -2.03
TMEM39A-204ENST00000468545 SSBP3-AS1Q7Z2R9 100 aa2.38□□□□□ -2.03
TMEM39A-204ENST00000468545 TEN1Q86WV5 123 aa2.38□□□□□ -2.03
TMEM39A-204ENST00000468545 CCKP06307 115 aa2.37□□□□□ -2.03
TMEM39A-204ENST00000468545 Q6JHZ5 121 aa2.37□□□□□ -2.03
TMEM39A-204ENST00000468545 OBSCN-AS1Q96MR7 158 aa2.37□□□□□ -2.03
TMEM39A-204ENST00000468545 LINC01600Q96MT4 127 aa2.37□□□□□ -2.03
TMEM39A-204ENST00000468545 ABCA13Q86UQ4 5058 aa2.37□□□□□ -2.03
TMEM39A-204ENST00000468545 SRRM2Q9UQ35 2752 aaKnown RBP2.37□□□□□ -2.03
TMEM39A-204ENST00000468545 IGLV8-61A0A075B6I0 122 aa2.36□□□□□ -2.03
TMEM39A-204ENST00000468545 TRBV7-4A0A0J9YYF1 115 aa2.36□□□□□ -2.03
TMEM39A-204ENST00000468545 A0A1W2PNM2 257 aa2.36□□□□□ -2.03
TMEM39A-204ENST00000468545 PDE6GP18545 87 aa2.36□□□□□ -2.03
TMEM39A-204ENST00000468545 LCE3CQ5T5A8 94 aa2.36□□□□□ -2.03
TMEM39A-204ENST00000468545 Q6ZQT0 140 aa2.36□□□□□ -2.03
TMEM39A-204ENST00000468545 LINC00304Q8N9R0 145 aa2.36□□□□□ -2.03
TMEM39A-204ENST00000468545 LRP1Q07954 4544 aaKnown RBP2.36□□□□□ -2.03
TMEM39A-204ENST00000468545 A0A087WSZ3 146 aa2.35□□□□□ -2.03
TMEM39A-204ENST00000468545 LOC110117498A0A087WWA1 95 aa2.35□□□□□ -2.03
TMEM39A-204ENST00000468545 KRTAP10-8P60410 259 aa2.35□□□□□ -2.03
TMEM39A-204ENST00000468545 KRTAP5-1Q6L8H4 278 aa2.35□□□□□ -2.03
TMEM39A-204ENST00000468545 MYCBP2O75592 4640 aa2.35□□□□□ -2.03
TMEM39A-204ENST00000468545 TNXBP22105 4242 aa2.34□□□□□ -2.03
TMEM39A-204ENST00000468545 TRBV7-7A0A0K0K1E9 115 aa2.34□□□□□ -2.03
TMEM39A-204ENST00000468545 J3QR89 54 aa2.34□□□□□ -2.03
TMEM39A-204ENST00000468545 OXTP01178 125 aa2.34□□□□□ -2.03
TMEM39A-204ENST00000468545 NREPQ16612 68 aa2.34□□□□□ -2.03
TMEM39A-204ENST00000468545 DEFB116Q30KQ4 102 aa2.34□□□□□ -2.03
TMEM39A-204ENST00000468545 SPAG11AQ6PDA7 123 aa2.33□□□□□ -2.04
TMEM39A-204ENST00000468545 LINC00846Q9NV44 126 aa2.33□□□□□ -2.04
TMEM39A-204ENST00000468545 FLG2Q5D862 2391 aaPredicted RBP2.32□□□□□ -2.04
TMEM39A-204ENST00000468545 KRTAP9-6A8MVA2 160 aa2.32□□□□□ -2.04
TMEM39A-204ENST00000468545 K7ERU9 68 aa2.32□□□□□ -2.04
TMEM39A-204ENST00000468545 SPINK1P00995 79 aa2.32□□□□□ -2.04
TMEM39A-204ENST00000468545 ACYP1P07311 99 aa2.32□□□□□ -2.04
TMEM39A-204ENST00000468545 MT1HL1P0DM35 61 aa2.32□□□□□ -2.04
TMEM39A-204ENST00000468545 CD164Q04900 197 aa2.32□□□□□ -2.04
TMEM39A-204ENST00000468545 Q6Q795 121 aa2.32□□□□□ -2.04
TMEM39A-204ENST00000468545 RETNLBQ9BQ08 111 aa2.32□□□□□ -2.04
TMEM39A-204ENST00000468545 UBL5Q9BZL1 73 aa2.32□□□□□ -2.04
TMEM39A-204ENST00000468545 PCLOQ9Y6V0 5065 aa2.32□□□□□ -2.04
TMEM39A-204ENST00000468545 IGKV3D-7A0A0C4DH55 119 aa2.31□□□□□ -2.04
TMEM39A-204ENST00000468545 IGKV4-1P06312 121 aa2.31□□□□□ -2.04
TMEM39A-204ENST00000468545 LIMD2Q9BT23 127 aa2.31□□□□□ -2.04
TMEM39A-204ENST00000468545 SS18L2Q9UHA2 77 aa2.31□□□□□ -2.04
TMEM39A-204ENST00000468545 A0A1B0GW54 56 aa2.3□□□□□ -2.04
TMEM39A-204ENST00000468545 BPY2O14599 106 aa2.3□□□□□ -2.04
TMEM39A-204ENST00000468545 PRR4Q16378 134 aa2.3□□□□□ -2.04
TMEM39A-204ENST00000468545 C1orf195Q5TG92 126 aa2.3□□□□□ -2.04
TMEM39A-204ENST00000468545 SIGMAR1Q99720 223 aa2.3□□□□□ -2.04
TMEM39A-204ENST00000468545 LINC00472Q9H8W2 130 aa2.29□□□□□ -2.04
TMEM39A-204ENST00000468545 IGHV6-1A0A0B4J1U7 121 aa2.28□□□□□ -2.04
TMEM39A-204ENST00000468545 FAM240AA0A1B0GVK7 77 aa2.28□□□□□ -2.04
TMEM39A-204ENST00000468545 NDUFB1O75438 58 aa2.28□□□□□ -2.04
TMEM39A-204ENST00000468545 RPS29P62273 56 aaKnown RBP2.28□□□□□ -2.04
TMEM39A-204ENST00000468545 HIST1H4AP62805 103 aaKnown RBP2.28□□□□□ -2.04
TMEM39A-204ENST00000468545 LINC00643Q86TS7 51 aa2.28□□□□□ -2.04
TMEM39A-204ENST00000468545 Q8N9L7 120 aa2.28□□□□□ -2.04
TMEM39A-204ENST00000468545 Q96NJ1 140 aa2.28□□□□□ -2.04
TMEM39A-204ENST00000468545 C9orf92A6NGG3 77 aa2.27□□□□□ -2.05
TMEM39A-204ENST00000468545 J3KT08 172 aa2.27□□□□□ -2.05
TMEM39A-204ENST00000468545 ASB16-AS1Q495Z4 193 aa2.27□□□□□ -2.05
TMEM39A-204ENST00000468545 Q5XG85 94 aa2.27□□□□□ -2.05
TMEM39A-204ENST00000468545 DMBT1Q9UGM3 2413 aaPredicted RBP2.27□□□□□ -2.05
TMEM39A-204ENST00000468545 A8MWP4 228 aa2.26□□□□□ -2.05
TMEM39A-204ENST00000468545 K7EQZ3 153 aa2.26□□□□□ -2.05
TMEM39A-204ENST00000468545 MT-ATP8P03928 68 aa2.26□□□□□ -2.05
TMEM39A-204ENST00000468545 CXCL6P80162 114 aa2.26□□□□□ -2.05
TMEM39A-204ENST00000468545 A0A087WVE0 104 aa2.25□□□□□ -2.05
TMEM39A-204ENST00000468545 A0A1B0GVX0 72 aa2.25□□□□□ -2.05
TMEM39A-204ENST00000468545 A8MU10 97 aa2.25□□□□□ -2.05
TMEM39A-204ENST00000468545 LINC00313P59037 77 aa2.25□□□□□ -2.05
TMEM39A-204ENST00000468545 WFDC13Q8IUB5 93 aa2.25□□□□□ -2.05
TMEM39A-204ENST00000468545 PRR15Q8IV56 129 aa2.25□□□□□ -2.05
TMEM39A-204ENST00000468545 NDUFS5O43920 106 aa2.24□□□□□ -2.05
TMEM39A-204ENST00000468545 ATP5EP2Q5VTU8 51 aa2.24□□□□□ -2.05
TMEM39A-204ENST00000468545 KRTAP5-4Q6L8H1 288 aa2.24□□□□□ -2.05
TMEM39A-204ENST00000468545 FP248Q71RG6 208 aaPredicted RBP2.24□□□□□ -2.05
TMEM39A-204ENST00000468545 KRTAP4-4Q9BYR3 166 aa2.24□□□□□ -2.05
TMEM39A-204ENST00000468545 C8orf17Q9NRJ1 99 aa2.24□□□□□ -2.05
TMEM39A-204ENST00000468545 C8orf87E5RJ46 101 aa2.23□□□□□ -2.05
TMEM39A-204ENST00000468545 CASC2Q6XLA1 102 aa2.23□□□□□ -2.05
TMEM39A-204ENST00000468545 MMP24-AS1A0A0U1RRL7 71 aa2.22□□□□□ -2.05
TMEM39A-204ENST00000468545 hDV103S1A0JD37 113 aa2.22□□□□□ -2.05
TMEM39A-204ENST00000468545 HCG22E2RYF7 251 aa2.22□□□□□ -2.05
TMEM39A-204ENST00000468545 SCGB1A1P11684 91 aa2.22□□□□□ -2.05
TMEM39A-204ENST00000468545 LPAP08519 4548 aa2.22□□□□□ -2.05
TMEM39A-204ENST00000468545 KRTAP13-3Q3SY46 172 aa2.21□□□□□ -2.06
TMEM39A-204ENST00000468545 MRPL34Q9BQ48 92 aaKnown RBP2.21□□□□□ -2.06
TMEM39A-204ENST00000468545 HERC1Q15751 4861 aa2.21□□□□□ -2.06
TMEM39A-204ENST00000468545 FAM236AA0A1B0GUQ0 79 aa2.2□□□□□ -2.06
TMEM39A-204ENST00000468545 FAM236BA0A1B0GV22 79 aa2.2□□□□□ -2.06
TMEM39A-204ENST00000468545 TMEM254Q8TBM7 123 aa2.2□□□□□ -2.06
TMEM39A-204ENST00000468545 IMUPQ9GZP8 106 aa2.2□□□□□ -2.06
TMEM39A-204ENST00000468545 MUC17Q685J3 4493 aa2.2□□□□□ -2.06
TMEM39A-204ENST00000468545 HMCN2Q8NDA2 5059 aa2.2□□□□□ -2.06
TMEM39A-204ENST00000468545 KRTAP5-9P26371 169 aa2.19□□□□□ -2.06
TMEM39A-204ENST00000468545 TPRXLQ17RH7 258 aa2.19□□□□□ -2.06
TMEM39A-204ENST00000468545 ATP11AUNQ6ZP68 121 aa2.18□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms