RNA–Protein interactions for RNA: ENST00000458277.1

HMGB4-202, Transcript of high mobility group box 4, humanhuman

TSL 3

Gene HMGB4, Length 437 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-202ENST00000458277 DEFB113Q30KQ7 82 aa3.37□□□□□ -1.87
HMGB4-202ENST00000458277 KRTAP26-1Q6PEX3 210 aa3.37□□□□□ -1.87
HMGB4-202ENST00000458277 SPINT4Q6UDR6 99 aa3.37□□□□□ -1.87
HMGB4-202ENST00000458277 C15orf56Q8N910 161 aa3.37□□□□□ -1.87
HMGB4-202ENST00000458277 CCDC168Q8NDH2 2452 aa3.37□□□□□ -1.87
HMGB4-202ENST00000458277 CSMD1Q96PZ7 3565 aa3.37□□□□□ -1.87
HMGB4-202ENST00000458277 MAP1AP78559 2803 aaPredicted RBP3.36□□□□□ -1.87
HMGB4-202ENST00000458277 A0A1B0GVX0 72 aa3.35□□□□□ -1.87
HMGB4-202ENST00000458277 FAM168BA1KXE4 195 aa3.35□□□□□ -1.87
HMGB4-202ENST00000458277 DEFB130BP0DP73 79 aa3.35□□□□□ -1.87
HMGB4-202ENST00000458277 DEFB130AP0DP74 79 aa3.35□□□□□ -1.87
HMGB4-202ENST00000458277 CASC10Q5T4H9 136 aa3.35□□□□□ -1.87
HMGB4-202ENST00000458277 HIVEP1P15822 2718 aa3.34□□□□□ -1.87
HMGB4-202ENST00000458277 NF1P21359 2839 aa3.34□□□□□ -1.87
HMGB4-202ENST00000458277 AKAP9Q99996 3911 aa3.34□□□□□ -1.88
HMGB4-202ENST00000458277 ANKRD17O75179 2603 aaKnown RBP3.33□□□□□ -1.88
HMGB4-202ENST00000458277 NDUFAF8A1L188 74 aa3.33□□□□□ -1.88
HMGB4-202ENST00000458277 CAMK2N1Q7Z7J9 78 aa3.33□□□□□ -1.88
HMGB4-202ENST00000458277 MYO9AB2RTY4 2548 aa3.33□□□□□ -1.88
HMGB4-202ENST00000458277 CSPG4Q6UVK1 2322 aa3.32□□□□□ -1.88
HMGB4-202ENST00000458277 H3BNG1 76 aa3.32□□□□□ -1.88
HMGB4-202ENST00000458277 LINC00304Q8N9R0 145 aa3.32□□□□□ -1.88
HMGB4-202ENST00000458277 ITPR3Q14573 2671 aa3.32□□□□□ -1.88
HMGB4-202ENST00000458277 ZANQ9Y493 2812 aa3.32□□□□□ -1.88
HMGB4-202ENST00000458277 ABCA2Q9BZC7 2435 aa3.31□□□□□ -1.88
HMGB4-202ENST00000458277 NOTCH3Q9UM47 2321 aa3.3□□□□□ -1.88
HMGB4-202ENST00000458277 GIG44P09565 113 aaPredicted RBP3.3□□□□□ -1.88
HMGB4-202ENST00000458277 KRTAP11-1Q8IUC1 163 aa3.3□□□□□ -1.88
HMGB4-202ENST00000458277 TLN2Q9Y4G6 2542 aa3.29□□□□□ -1.88
HMGB4-202ENST00000458277 ACANP16112 2415 aa3.29□□□□□ -1.88
HMGB4-202ENST00000458277 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.29□□□□□ -1.88
HMGB4-202ENST00000458277 NIPBLQ6KC79 2804 aaeCLIP3.29□□□□□ -1.88
HMGB4-202ENST00000458277 DEFB136Q30KP8 78 aa3.29□□□□□ -1.88
HMGB4-202ENST00000458277 SSBP3-AS1Q7Z2R9 100 aa3.29□□□□□ -1.88
HMGB4-202ENST00000458277 VPS13CQ709C8 3753 aa3.29□□□□□ -1.88
HMGB4-202ENST00000458277 FLNAP21333 2647 aaKnown RBP3.29□□□□□ -1.88
HMGB4-202ENST00000458277 ZNF469Q96JG9 3925 aaPredicted RBP3.28□□□□□ -1.88
HMGB4-202ENST00000458277 A0A087WTM6 91 aa3.28□□□□□ -1.88
HMGB4-202ENST00000458277 PANO1I0J062 215 aa3.28□□□□□ -1.88
HMGB4-202ENST00000458277 COX6B2Q6YFQ2 88 aa3.28□□□□□ -1.88
HMGB4-202ENST00000458277 NSD1Q96L73 2696 aaPredicted RBP3.28□□□□□ -1.88
HMGB4-202ENST00000458277 MTORP42345 2549 aa3.28□□□□□ -1.88
HMGB4-202ENST00000458277 SONP18583 2426 aaKnown RBP3.28□□□□□ -1.89
HMGB4-202ENST00000458277 A0A096LPF7 62 aa3.27□□□□□ -1.89
HMGB4-202ENST00000458277 SPART-AS1P0CW21 52 aa3.27□□□□□ -1.89
HMGB4-202ENST00000458277 KRTAP5-2Q701N4 177 aa3.27□□□□□ -1.89
HMGB4-202ENST00000458277 MAPK1IP1LQ8NDC0 245 aa3.27□□□□□ -1.89
HMGB4-202ENST00000458277 TEP1Q99973 2627 aaKnown RBP3.26□□□□□ -1.89
HMGB4-202ENST00000458277 WNK1Q9H4A3 2382 aa3.26□□□□□ -1.89
HMGB4-202ENST00000458277 MXRA5Q9NR99 2828 aa3.26□□□□□ -1.89
HMGB4-202ENST00000458277 KRTAP10-12P60413 245 aa3.26□□□□□ -1.89
HMGB4-202ENST00000458277 F8P00451 2351 aa3.26□□□□□ -1.89
HMGB4-202ENST00000458277 A0A1B0GU33 70 aa3.25□□□□□ -1.89
HMGB4-202ENST00000458277 KRTAP13-3Q3SY46 172 aa3.25□□□□□ -1.89
HMGB4-202ENST00000458277 C10orf99Q6UWK7 81 aa3.25□□□□□ -1.89
HMGB4-202ENST00000458277 HIVEP2P31629 2446 aa3.25□□□□□ -1.89
HMGB4-202ENST00000458277 SETD2Q9BYW2 2564 aaPredicted RBP3.25□□□□□ -1.89
HMGB4-202ENST00000458277 FN1P02751 2386 aaKnown RBP3.24□□□□□ -1.89
HMGB4-202ENST00000458277 LINC01556Q5JQF7 62 aa3.23□□□□□ -1.89
HMGB4-202ENST00000458277 Q96NJ1 140 aa3.23□□□□□ -1.89
HMGB4-202ENST00000458277 SMR3AQ99954 134 aa3.22□□□□□ -1.89
HMGB4-202ENST00000458277 CRIPTQ9P021 101 aa3.22□□□□□ -1.89
HMGB4-202ENST00000458277 FBN1P35555 2871 aaKnown RBP3.22□□□□□ -1.89
HMGB4-202ENST00000458277 ANK3Q12955 4377 aaKnown RBP3.21□□□□□ -1.89
HMGB4-202ENST00000458277 KRTAP21-3Q3LHN1 58 aa3.2□□□□□ -1.9
HMGB4-202ENST00000458277 H1FX-AS1Q4G0G2 97 aa3.2□□□□□ -1.9
HMGB4-202ENST00000458277 PSORS1C2Q9UIG4 136 aa3.2□□□□□ -1.9
HMGB4-202ENST00000458277 C2CD3Q4AC94 2353 aa3.19□□□□□ -1.9
HMGB4-202ENST00000458277 SVEP1Q4LDE5 3571 aa3.19□□□□□ -1.9
HMGB4-202ENST00000458277 JMJD1CQ15652 2540 aa3.19□□□□□ -1.9
HMGB4-202ENST00000458277 A0A0G2JQZ4 141 aa3.19□□□□□ -1.9
HMGB4-202ENST00000458277 NBDYA0A0U1RRE5 68 aa3.19□□□□□ -1.9
HMGB4-202ENST00000458277 H0YAA0 97 aa3.19□□□□□ -1.9
HMGB4-202ENST00000458277 Q6ZSA8 131 aa3.19□□□□□ -1.9
HMGB4-202ENST00000458277 CUBNO60494 3623 aa3.18□□□□□ -1.9
HMGB4-202ENST00000458277 A0A1W2PNN7 141 aa3.18□□□□□ -1.9
HMGB4-202ENST00000458277 CIRBP-AS1Q8TBR5 109 aa3.18□□□□□ -1.9
HMGB4-202ENST00000458277 PRLHP81277 87 aa3.17□□□□□ -1.9
HMGB4-202ENST00000458277 TENM1Q9UKZ4 2725 aa3.17□□□□□ -1.9
HMGB4-202ENST00000458277 C14orf177Q52M58 125 aa3.16□□□□□ -1.9
HMGB4-202ENST00000458277 ATRQ13535 2644 aa3.16□□□□□ -1.9
HMGB4-202ENST00000458277 HTN3P15516 51 aa3.15□□□□□ -1.91
HMGB4-202ENST00000458277 RPL37P61927 97 aaKnown RBP3.15□□□□□ -1.91
HMGB4-202ENST00000458277 ALMS1Q8TCU4 4167 aa3.14□□□□□ -1.91
HMGB4-202ENST00000458277 COL6A5A8TX70 2615 aa3.14□□□□□ -1.91
HMGB4-202ENST00000458277 KRTAP7-1Q8IUC3 87 aa3.13□□□□□ -1.91
HMGB4-202ENST00000458277 STAB1Q9NY15 2570 aa3.12□□□□□ -1.91
HMGB4-202ENST00000458277 K7EIL1 84 aa3.12□□□□□ -1.91
HMGB4-202ENST00000458277 KRTAP10-3P60369 221 aa3.12□□□□□ -1.91
HMGB4-202ENST00000458277 DNHD1Q96M86 4753 aa3.11□□□□□ -1.91
HMGB4-202ENST00000458277 KRTAP24-1Q3LI83 254 aa3.11□□□□□ -1.91
HMGB4-202ENST00000458277 PKD1L1Q8TDX9 2849 aa3.11□□□□□ -1.91
HMGB4-202ENST00000458277 FBN3Q75N90 2809 aa3.1□□□□□ -1.91
HMGB4-202ENST00000458277 VWFP04275 2813 aa3.1□□□□□ -1.91
HMGB4-202ENST00000458277 ANK2Q01484 3957 aa3.09□□□□□ -1.91
HMGB4-202ENST00000458277 A0A096LNI7 61 aa3.09□□□□□ -1.91
HMGB4-202ENST00000458277 DEFB135Q30KP9 77 aa3.09□□□□□ -1.91
HMGB4-202ENST00000458277 MEGF8Q7Z7M0 2845 aa3.08□□□□□ -1.92
HMGB4-202ENST00000458277 TPRXLQ17RH7 258 aa3.08□□□□□ -1.92
HMGB4-202ENST00000458277 KRTAP13-1Q8IUC0 172 aa3.08□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms