RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 I3L2K1 104 aa2.91□□□□□ -1.94
CCDC88A-209ENST00000456975 K7EIM0 57 aa2.91□□□□□ -1.94
CCDC88A-209ENST00000456975 C16orf74Q96GX8 76 aa2.91□□□□□ -1.94
CCDC88A-209ENST00000456975 KLK12Q9UKR0 248 aa2.91□□□□□ -1.94
CCDC88A-209ENST00000456975 RPL39P62891 51 aaKnown RBP2.9□□□□□ -1.95
CCDC88A-209ENST00000456975 KRTAP7-1Q8IUC3 87 aa2.9□□□□□ -1.95
CCDC88A-209ENST00000456975 Q8N9L7 120 aa2.9□□□□□ -1.95
CCDC88A-209ENST00000456975 ST20-AS1Q8NBB2 130 aa2.9□□□□□ -1.95
CCDC88A-209ENST00000456975 POLR2KP53803 58 aaKnown RBP2.89□□□□□ -1.95
CCDC88A-209ENST00000456975 KRTAP10-11P60412 298 aa2.89□□□□□ -1.95
CCDC88A-209ENST00000456975 HERC2O95714 4834 aa2.89□□□□□ -1.95
CCDC88A-209ENST00000456975 IGKV2-28A0A075B6P5 120 aa2.89□□□□□ -1.95
CCDC88A-209ENST00000456975 IGKV2D-28P01615 120 aa2.89□□□□□ -1.95
CCDC88A-209ENST00000456975 LYZP61626 148 aa2.89□□□□□ -1.95
CCDC88A-209ENST00000456975 RPL39LQ96EH5 51 aaKnown RBP2.89□□□□□ -1.95
CCDC88A-209ENST00000456975 LINC00158P58513 81 aa2.88□□□□□ -1.95
CCDC88A-209ENST00000456975 LINC00472Q9H8W2 130 aa2.88□□□□□ -1.95
CCDC88A-209ENST00000456975 A0A087WTM6 91 aa2.87□□□□□ -1.95
CCDC88A-209ENST00000456975 FAM168BA1KXE4 195 aa2.87□□□□□ -1.95
CCDC88A-209ENST00000456975 LYSTQ99698 3801 aa2.87□□□□□ -1.95
CCDC88A-209ENST00000456975 SORL1Q92673 2214 aa2.87□□□□□ -1.95
CCDC88A-209ENST00000456975 SPINT4Q6UDR6 99 aa2.87□□□□□ -1.95
CCDC88A-209ENST00000456975 COX7BP24311 80 aa2.85□□□□□ -1.95
CCDC88A-209ENST00000456975 HUWE1Q7Z6Z7 4374 aaKnown RBP2.85□□□□□ -1.95
CCDC88A-209ENST00000456975 RYR1P21817 5038 aa2.85□□□□□ -1.95
CCDC88A-209ENST00000456975 CSMD3Q7Z407 3707 aa2.85□□□□□ -1.95
CCDC88A-209ENST00000456975 STARD9Q9P2P6 4700 aa2.84□□□□□ -1.95
CCDC88A-209ENST00000456975 DNAH7Q8WXX0 4024 aa2.84□□□□□ -1.95
CCDC88A-209ENST00000456975 STAB2Q8WWQ8 2551 aa2.84□□□□□ -1.96
CCDC88A-209ENST00000456975 RHPN1-AS1Q9BWJ2 59 aa2.84□□□□□ -1.96
CCDC88A-209ENST00000456975 ALMS1Q8TCU4 4167 aa2.83□□□□□ -1.96
CCDC88A-209ENST00000456975 A0A1B0GU33 70 aa2.83□□□□□ -1.96
CCDC88A-209ENST00000456975 TRGV1A0A0A0MS02 117 aa2.82□□□□□ -1.96
CCDC88A-209ENST00000456975 A0A1B0GU69 56 aa2.82□□□□□ -1.96
CCDC88A-209ENST00000456975 KIAA1109Q2LD37 5005 aa2.82□□□□□ -1.96
CCDC88A-209ENST00000456975 FRAS1Q86XX4 4008 aa2.82□□□□□ -1.96
CCDC88A-209ENST00000456975 IGKV2-40A0A087WW87 121 aaPredicted RBP2.81□□□□□ -1.96
CCDC88A-209ENST00000456975 H3BRN7 92 aa2.81□□□□□ -1.96
CCDC88A-209ENST00000456975 IGKV2D-40P01614 121 aaPredicted RBP2.81□□□□□ -1.96
CCDC88A-209ENST00000456975 LINC00315P59091 139 aa2.81□□□□□ -1.96
CCDC88A-209ENST00000456975 NBDYA0A0U1RRE5 68 aa2.8□□□□□ -1.96
CCDC88A-209ENST00000456975 LINC00575Q6W349 94 aa2.8□□□□□ -1.96
CCDC88A-209ENST00000456975 Q96NJ1 140 aa2.8□□□□□ -1.96
CCDC88A-209ENST00000456975 CDKN2A-AS1Q9UH64 79 aa2.8□□□□□ -1.96
CCDC88A-209ENST00000456975 LY6G6CO95867 125 aa2.8□□□□□ -1.96
CCDC88A-209ENST00000456975 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa2.8□□□□□ -1.96
CCDC88A-209ENST00000456975 PLECQ15149 4684 aaKnown RBP2.8□□□□□ -1.96
CCDC88A-209ENST00000456975 A8MTW9 85 aa2.79□□□□□ -1.96
CCDC88A-209ENST00000456975 DEFB131AP59861 70 aa2.79□□□□□ -1.96
CCDC88A-209ENST00000456975 Q6ZQY7 126 aa2.79□□□□□ -1.96
CCDC88A-209ENST00000456975 IGLV7-43P04211 117 aa2.78□□□□□ -1.96
CCDC88A-209ENST00000456975 HRES1P13985 223 aa2.78□□□□□ -1.96
CCDC88A-209ENST00000456975 ABCA13Q86UQ4 5058 aa2.78□□□□□ -1.96
CCDC88A-209ENST00000456975 IGKV2D-24A0A075B6R9 120 aa2.77□□□□□ -1.97
CCDC88A-209ENST00000456975 DEFB104AQ8WTQ1 72 aa2.77□□□□□ -1.97
CCDC88A-209ENST00000456975 LINC00304Q8N9R0 145 aa2.77□□□□□ -1.97
CCDC88A-209ENST00000456975 DEFB131BA0A096LNP1 70 aa2.76□□□□□ -1.97
CCDC88A-209ENST00000456975 DEFB1P60022 68 aa2.76□□□□□ -1.97
CCDC88A-209ENST00000456975 HECTD4Q9Y4D8 3996 aa2.76□□□□□ -1.97
CCDC88A-209ENST00000456975 Q8IZM0 81 aa2.76□□□□□ -1.97
CCDC88A-209ENST00000456975 DEFB116Q30KQ4 102 aa2.75□□□□□ -1.97
CCDC88A-209ENST00000456975 DEFB135Q30KP9 77 aa2.74□□□□□ -1.97
CCDC88A-209ENST00000456975 DNAH10Q8IVF4 4471 aa2.74□□□□□ -1.97
CCDC88A-209ENST00000456975 M0QY20 66 aa2.74□□□□□ -1.97
CCDC88A-209ENST00000456975 DSCR10P59022 87 aa2.74□□□□□ -1.97
CCDC88A-209ENST00000456975 COX6A2Q02221 97 aa2.74□□□□□ -1.97
CCDC88A-209ENST00000456975 COX17Q14061 63 aa2.74□□□□□ -1.97
CCDC88A-209ENST00000456975 KRTAP11-1Q8IUC1 163 aa2.73□□□□□ -1.97
CCDC88A-209ENST00000456975 K7EQZ3 153 aa2.72□□□□□ -1.97
CCDC88A-209ENST00000456975 SPINK13Q1W4C9 94 aa2.72□□□□□ -1.97
CCDC88A-209ENST00000456975 SSBP3-AS1Q7Z2R9 100 aa2.72□□□□□ -1.97
CCDC88A-209ENST00000456975 A0A1W2PNN7 141 aa2.72□□□□□ -1.97
CCDC88A-209ENST00000456975 PRO2289Q9P1D8 64 aa2.72□□□□□ -1.97
CCDC88A-209ENST00000456975 PRR9Q5T870 116 aa2.71□□□□□ -1.98
CCDC88A-209ENST00000456975 DEFB4AO15263 64 aa2.7□□□□□ -1.98
CCDC88A-209ENST00000456975 LCE1AQ5T7P2 110 aa2.7□□□□□ -1.98
CCDC88A-209ENST00000456975 KMT2AQ03164 3969 aa2.7□□□□□ -1.98
CCDC88A-209ENST00000456975 RPL37AP61513 92 aaKnown RBP2.7□□□□□ -1.98
CCDC88A-209ENST00000456975 DYNC1H1Q14204 4646 aaKnown RBP2.69□□□□□ -1.98
CCDC88A-209ENST00000456975 SPART-AS1P0CW21 52 aa2.69□□□□□ -1.98
CCDC88A-209ENST00000456975 R4GN34 69 aa2.69□□□□□ -1.98
CCDC88A-209ENST00000456975 IGLV6-57P01721 117 aa2.69□□□□□ -1.98
CCDC88A-209ENST00000456975 ACYP2P14621 99 aa2.69□□□□□ -1.98
CCDC88A-209ENST00000456975 PKHD1P08F94 4074 aa2.68□□□□□ -1.98
CCDC88A-209ENST00000456975 A0A1B0GVY2 172 aa2.68□□□□□ -1.98
CCDC88A-209ENST00000456975 PCOTHQ58A44 107 aa2.68□□□□□ -1.98
CCDC88A-209ENST00000456975 NOP10Q9NPE3 64 aaKnown RBP2.68□□□□□ -1.98
CCDC88A-209ENST00000456975 CRIPTQ9P021 101 aa2.68□□□□□ -1.98
CCDC88A-209ENST00000456975 HERC1Q15751 4861 aa2.67□□□□□ -1.98
CCDC88A-209ENST00000456975 DNAH6Q9C0G6 4158 aa2.67□□□□□ -1.98
CCDC88A-209ENST00000456975 HTN1P15515 57 aa2.67□□□□□ -1.98
CCDC88A-209ENST00000456975 APLNQ9ULZ1 77 aa2.67□□□□□ -1.98
CCDC88A-209ENST00000456975 VPS13DQ5THJ4 4388 aa2.67□□□□□ -1.98
CCDC88A-209ENST00000456975 UBR4Q5T4S7 5183 aa2.67□□□□□ -1.98
CCDC88A-209ENST00000456975 DNAH11Q96DT5 4516 aa2.67□□□□□ -1.98
CCDC88A-209ENST00000456975 A0A0G2JQZ4 141 aa2.66□□□□□ -1.98
CCDC88A-209ENST00000456975 HSPG2P98160 4391 aa2.66□□□□□ -1.98
CCDC88A-209ENST00000456975 IGLV5-48A0A075B6I7 105 aa2.66□□□□□ -1.98
CCDC88A-209ENST00000456975 WFDC13Q8IUB5 93 aa2.66□□□□□ -1.98
CCDC88A-209ENST00000456975 PSORS1C2Q9UIG4 136 aa2.66□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms