RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 IGKV2-40A0A087WW87 121 aaPredicted RBP2.36□□□□□ -2.03
HMGB3-203ENST00000430118 A0A1B0GW54 56 aa2.36□□□□□ -2.03
HMGB3-203ENST00000430118 K7ERS5 55 aa2.36□□□□□ -2.03
HMGB3-203ENST00000430118 IGKV1-17P01599 117 aa2.36□□□□□ -2.03
HMGB3-203ENST00000430118 IGKV2D-40P01614 121 aaPredicted RBP2.36□□□□□ -2.03
HMGB3-203ENST00000430118 PRM2P04554 102 aa2.36□□□□□ -2.03
HMGB3-203ENST00000430118 C9orf116Q5BN46 136 aaPredicted RBP2.36□□□□□ -2.03
HMGB3-203ENST00000430118 SPINT4Q6UDR6 99 aa2.36□□□□□ -2.03
HMGB3-203ENST00000430118 Q6ZQT0 140 aa2.36□□□□□ -2.03
HMGB3-203ENST00000430118 ZCCHC13Q8WW36 166 aaKnown RBP2.36□□□□□ -2.03
HMGB3-203ENST00000430118 SRRM2Q9UQ35 2752 aaKnown RBP2.35□□□□□ -2.03
HMGB3-203ENST00000430118 IGKV3-7A0A075B6H7 116 aa2.35□□□□□ -2.03
HMGB3-203ENST00000430118 IGKV2-29A2NJV5 120 aaPredicted RBP2.35□□□□□ -2.03
HMGB3-203ENST00000430118 CHKB-CPT1BH3BT56 60 aa2.35□□□□□ -2.03
HMGB3-203ENST00000430118 I3L2K1 104 aa2.35□□□□□ -2.03
HMGB3-203ENST00000430118 SMR3BP02814 79 aaPredicted RBP2.35□□□□□ -2.03
HMGB3-203ENST00000430118 RPL27AP46776 148 aaKnown RBP2.35□□□□□ -2.03
HMGB3-203ENST00000430118 DEFB131AP59861 70 aa2.35□□□□□ -2.03
HMGB3-203ENST00000430118 FAM74A4Q5TZK3 123 aa2.35□□□□□ -2.03
HMGB3-203ENST00000430118 RPL39LQ96EH5 51 aaKnown RBP2.35□□□□□ -2.03
HMGB3-203ENST00000430118 RHPN1-AS1Q9BWJ2 59 aa2.35□□□□□ -2.03
HMGB3-203ENST00000430118 FAT3Q8TDW7 4589 aa2.34□□□□□ -2.03
HMGB3-203ENST00000430118 TRAV21A0A0B4J279 112 aa2.34□□□□□ -2.03
HMGB3-203ENST00000430118 TRBV10-1A0A0K0K1A3 114 aa2.34□□□□□ -2.03
HMGB3-203ENST00000430118 A8MUU9 505 aa2.34□□□□□ -2.03
HMGB3-203ENST00000430118 KRTAP9-6A8MVA2 160 aa2.34□□□□□ -2.03
HMGB3-203ENST00000430118 NCR3O14931 201 aa2.34□□□□□ -2.03
HMGB3-203ENST00000430118 PRB4P10163 310 aaPredicted RBP2.34□□□□□ -2.03
HMGB3-203ENST00000430118 LINC00315P59091 139 aa2.34□□□□□ -2.03
HMGB3-203ENST00000430118 RPL39P62891 51 aaKnown RBP2.34□□□□□ -2.03
HMGB3-203ENST00000430118 CASC2Q6XLA1 102 aa2.34□□□□□ -2.03
HMGB3-203ENST00000430118 Q8TAT8 98 aa2.34□□□□□ -2.03
HMGB3-203ENST00000430118 KLK9Q9UKQ9 250 aa2.34□□□□□ -2.03
HMGB3-203ENST00000430118 LECT2O14960 151 aa2.33□□□□□ -2.04
HMGB3-203ENST00000430118 MGPP08493 103 aa2.33□□□□□ -2.04
HMGB3-203ENST00000430118 C10orf55Q5SWW7 151 aa2.33□□□□□ -2.04
HMGB3-203ENST00000430118 KRTAP5-4Q6L8H1 288 aa2.33□□□□□ -2.04
HMGB3-203ENST00000430118 SCXQ7RTU7 201 aa2.33□□□□□ -2.04
HMGB3-203ENST00000430118 SPTSSBQ8NFR3 76 aa2.33□□□□□ -2.04
HMGB3-203ENST00000430118 SMIM11BQ8TCY0 68 aa2.33□□□□□ -2.04
HMGB3-203ENST00000430118 IGHV3-64A0A075B6Q5 118 aa2.32□□□□□ -2.04
HMGB3-203ENST00000430118 A6NED7 52 aa2.32□□□□□ -2.04
HMGB3-203ENST00000430118 H3BPC8 53 aa2.32□□□□□ -2.04
HMGB3-203ENST00000430118 K7EIM0 57 aa2.32□□□□□ -2.04
HMGB3-203ENST00000430118 MOBPQ13875 183 aa2.32□□□□□ -2.04
HMGB3-203ENST00000430118 KLK9Q2XQG4 91 aa2.32□□□□□ -2.04
HMGB3-203ENST00000430118 KRTAP4-4Q9BYR3 166 aa2.32□□□□□ -2.04
HMGB3-203ENST00000430118 PLAC8Q9NZF1 115 aa2.32□□□□□ -2.04
HMGB3-203ENST00000430118 FLG2Q5D862 2391 aaPredicted RBP2.31□□□□□ -2.04
HMGB3-203ENST00000430118 PKHD1L1Q86WI1 4243 aa2.31□□□□□ -2.04
HMGB3-203ENST00000430118 IGKV4-1P06312 121 aa2.31□□□□□ -2.04
HMGB3-203ENST00000430118 HAMPP81172 84 aa2.31□□□□□ -2.04
HMGB3-203ENST00000430118 LRP2P98164 4655 aa2.31□□□□□ -2.04
HMGB3-203ENST00000430118 Q8N814 137 aa2.31□□□□□ -2.04
HMGB3-203ENST00000430118 XAGE1AQ9HD64 81 aa2.31□□□□□ -2.04
HMGB3-203ENST00000430118 LINC01558Q9Y6Z2 57 aa2.31□□□□□ -2.04
HMGB3-203ENST00000430118 LRP1Q07954 4544 aaKnown RBP2.31□□□□□ -2.04
HMGB3-203ENST00000430118 DNAH8Q96JB1 4490 aa2.3□□□□□ -2.04
HMGB3-203ENST00000430118 M0QY20 66 aa2.3□□□□□ -2.04
HMGB3-203ENST00000430118 RNASE3P12724 160 aaKnown RBP2.3□□□□□ -2.04
HMGB3-203ENST00000430118 KRTAP10-1P60331 282 aa2.3□□□□□ -2.04
HMGB3-203ENST00000430118 CNBPP62633 177 aaKnown RBP2.3□□□□□ -2.04
HMGB3-203ENST00000430118 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa2.3□□□□□ -2.04
HMGB3-203ENST00000430118 ZFAND2AQ8N6M9 145 aa2.3□□□□□ -2.04
HMGB3-203ENST00000430118 LINC00208Q96KT6 92 aa2.3□□□□□ -2.04
HMGB3-203ENST00000430118 LINC00467Q9BRT7 94 aa2.3□□□□□ -2.04
HMGB3-203ENST00000430118 PRR15LQ9BU68 103 aa2.3□□□□□ -2.04
HMGB3-203ENST00000430118 HIGD2AQ9BW72 106 aa2.3□□□□□ -2.04
HMGB3-203ENST00000430118 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.29□□□□□ -2.04
HMGB3-203ENST00000430118 A0A087WTM6 91 aa2.29□□□□□ -2.04
HMGB3-203ENST00000430118 IGHV3-73A0A0B4J1V6 119 aa2.29□□□□□ -2.04
HMGB3-203ENST00000430118 ETDCA0A1B0GVM5 59 aa2.29□□□□□ -2.04
HMGB3-203ENST00000430118 TRBV6-4A0A1B0GX49 114 aa2.29□□□□□ -2.04
HMGB3-203ENST00000430118 H3BNG1 76 aa2.29□□□□□ -2.04
HMGB3-203ENST00000430118 IGHV3-53P01767 116 aa2.29□□□□□ -2.04
HMGB3-203ENST00000430118 DEFB130BP0DP73 79 aa2.29□□□□□ -2.04
HMGB3-203ENST00000430118 DEFB130AP0DP74 79 aa2.29□□□□□ -2.04
HMGB3-203ENST00000430118 KRTAP5-9P26371 169 aa2.29□□□□□ -2.04
HMGB3-203ENST00000430118 RETNLBQ9BQ08 111 aa2.29□□□□□ -2.04
HMGB3-203ENST00000430118 KCNQ1DNQ9H478 68 aa2.29□□□□□ -2.04
HMGB3-203ENST00000430118 A8MWP4 228 aa2.28□□□□□ -2.04
HMGB3-203ENST00000430118 COX7BP24311 80 aa2.28□□□□□ -2.04
HMGB3-203ENST00000430118 Q6ZRN7 208 aaPredicted RBP2.28□□□□□ -2.04
HMGB3-203ENST00000430118 CDKN2A-AS1Q9UH64 79 aa2.28□□□□□ -2.04
HMGB3-203ENST00000430118 FAT4Q6V0I7 4981 aa2.28□□□□□ -2.05
HMGB3-203ENST00000430118 TNXBP22105 4242 aa2.27□□□□□ -2.05
HMGB3-203ENST00000430118 TRGV2A0A075B6R0 118 aa2.27□□□□□ -2.05
HMGB3-203ENST00000430118 KRTAP13-2Q52LG2 175 aa2.27□□□□□ -2.05
HMGB3-203ENST00000430118 PRR9Q5T870 116 aa2.27□□□□□ -2.05
HMGB3-203ENST00000430118 Q6ZTI0 123 aa2.27□□□□□ -2.05
HMGB3-203ENST00000430118 MUC2Q02817 5179 aa2.26□□□□□ -2.05
HMGB3-203ENST00000430118 KRTAP12-2P59991 146 aa2.26□□□□□ -2.05
HMGB3-203ENST00000430118 RPL37AP61513 92 aaKnown RBP2.26□□□□□ -2.05
HMGB3-203ENST00000430118 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.26□□□□□ -2.05
HMGB3-203ENST00000430118 LINC00575Q6W349 94 aa2.26□□□□□ -2.05
HMGB3-203ENST00000430118 COX7B2Q8TF08 81 aa2.26□□□□□ -2.05
HMGB3-203ENST00000430118 LCE3EQ5T5B0 92 aa2.25□□□□□ -2.05
HMGB3-203ENST00000430118 IGFL1Q6UW32 110 aa2.25□□□□□ -2.05
HMGB3-203ENST00000430118 Q6ZSA8 131 aa2.25□□□□□ -2.05
HMGB3-203ENST00000430118 HTN1P15515 57 aa2.24□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms