RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 FAIMQ9NVQ4 179 aa1.11□□□□□ -2.23
USP40-204ENST00000427947 ARL2-SNX15V9GYD0 113 aa1.11□□□□□ -2.23
USP40-204ENST00000427947 DNAH17Q9UFH2 4485 aa1.11□□□□□ -2.23
USP40-204ENST00000427947 GVQW2A0A096LPI5 108 aaPredicted RBP1.1□□□□□ -2.23
USP40-204ENST00000427947 A0A1B0GWA3 101 aa1.1□□□□□ -2.23
USP40-204ENST00000427947 ATOX1O00244 68 aa1.1□□□□□ -2.23
USP40-204ENST00000427947 SPINK9Q5DT21 86 aa1.1□□□□□ -2.23
USP40-204ENST00000427947 LINC01590Q5TEZ4 76 aa1.1□□□□□ -2.23
USP40-204ENST00000427947 Q6ZRX8 168 aa1.1□□□□□ -2.23
USP40-204ENST00000427947 SMIM4Q8WVI0 70 aa1.1□□□□□ -2.23
USP40-204ENST00000427947 S100ZQ8WXG8 99 aa1.1□□□□□ -2.23
USP40-204ENST00000427947 PRR15LQ9BU68 103 aa1.1□□□□□ -2.23
USP40-204ENST00000427947 SFT2D2O95562 160 aa1.09□□□□□ -2.23
USP40-204ENST00000427947 UBE2D3P61077 147 aa1.09□□□□□ -2.23
USP40-204ENST00000427947 UBE2D2P62837 147 aa1.09□□□□□ -2.23
USP40-204ENST00000427947 ABRACLQ9P1F3 81 aa1.09□□□□□ -2.23
USP40-204ENST00000427947 V9GYS6 101 aa1.09□□□□□ -2.23
USP40-204ENST00000427947 CPSF4LA6NMK7 179 aaKnown RBP1.08□□□□□ -2.24
USP40-204ENST00000427947 LYNX1G3V0Z9 82 aa1.08□□□□□ -2.24
USP40-204ENST00000427947 M0R3E3 92 aa1.08□□□□□ -2.24
USP40-204ENST00000427947 UQCR11O14957 56 aa1.08□□□□□ -2.24
USP40-204ENST00000427947 NDUFC1O43677 76 aa1.08□□□□□ -2.24
USP40-204ENST00000427947 SPRR2DP22532 72 aa1.08□□□□□ -2.24
USP40-204ENST00000427947 FAM223AQ8IWN6 122 aa1.08□□□□□ -2.24
USP40-204ENST00000427947 NXT2Q9NPJ8 142 aaKnown RBP1.08□□□□□ -2.24
USP40-204ENST00000427947 CDC42SE2Q9NRR3 84 aa1.08□□□□□ -2.24
USP40-204ENST00000427947 VPS13BQ7Z7G8 4022 aa1.07□□□□□ -2.24
USP40-204ENST00000427947 PDCD5O14737 125 aa1.07□□□□□ -2.24
USP40-204ENST00000427947 CACFD1Q9UGQ2 172 aa1.07□□□□□ -2.24
USP40-204ENST00000427947 LINC01558Q9Y6Z2 57 aa1.07□□□□□ -2.24
USP40-204ENST00000427947 SNRPGP15A8MWD9 76 aa1.06□□□□□ -2.24
USP40-204ENST00000427947 IQCF6A8MYZ5 107 aa1.06□□□□□ -2.24
USP40-204ENST00000427947 IGLC1P0CG04 106 aa1.06□□□□□ -2.24
USP40-204ENST00000427947 HAMPP81172 84 aa1.06□□□□□ -2.24
USP40-204ENST00000427947 COX17Q14061 63 aa1.06□□□□□ -2.24
USP40-204ENST00000427947 SERP2Q8N6R1 65 aa1.06□□□□□ -2.24
USP40-204ENST00000427947 SYNE1Q8NF91 8797 aaKnown RBP1.06□□□□□ -2.24
USP40-204ENST00000427947 FAM223BA6NKX1 122 aa1.05□□□□□ -2.24
USP40-204ENST00000427947 MRPL33O75394 65 aaKnown RBP1.05□□□□□ -2.24
USP40-204ENST00000427947 MGPP08493 103 aa1.05□□□□□ -2.24
USP40-204ENST00000427947 S100A16Q96FQ6 103 aaKnown RBP1.05□□□□□ -2.24
USP40-204ENST00000427947 AMELXQ99217 191 aa1.05□□□□□ -2.24
USP40-204ENST00000427947 TRGV9Q99603 122 aa1.05□□□□□ -2.24
USP40-204ENST00000427947 G3V318 75 aa1.04□□□□□ -2.24
USP40-204ENST00000427947 PMCHL1Q16048 86 aa1.04□□□□□ -2.24
USP40-204ENST00000427947 UBE2DNLQ8IWF7 75 aa1.04□□□□□ -2.24
USP40-204ENST00000427947 TOMM5Q8N4H5 51 aa1.04□□□□□ -2.24
USP40-204ENST00000427947 DEFB108BQ8NET1 73 aa1.04□□□□□ -2.24
USP40-204ENST00000427947 NMES1Q9C002 83 aa1.04□□□□□ -2.24
USP40-204ENST00000427947 PRO1933Q9H354 126 aa1.04□□□□□ -2.24
USP40-204ENST00000427947 KAAG1Q9UBP8 84 aa1.04□□□□□ -2.24
USP40-204ENST00000427947 DNAH8Q96JB1 4490 aa1.04□□□□□ -2.24
USP40-204ENST00000427947 ZNF815PA8K554 130 aa1.03□□□□□ -2.24
USP40-204ENST00000427947 SYS1-DBNDD2H3BUS1 97 aa1.03□□□□□ -2.24
USP40-204ENST00000427947 CYB5AP00167 134 aa1.03□□□□□ -2.24
USP40-204ENST00000427947 GYPAP02724 150 aa1.03□□□□□ -2.24
USP40-204ENST00000427947 NMBP08949 121 aa1.03□□□□□ -2.24
USP40-204ENST00000427947 SAA2P0DJI9 122 aaPredicted RBP1.03□□□□□ -2.24
USP40-204ENST00000427947 RPS27P42677 84 aaKnown RBP1.03□□□□□ -2.24
USP40-204ENST00000427947 PRB3Q04118 309 aaPredicted RBP1.03□□□□□ -2.24
USP40-204ENST00000427947 HMGN3Q15651 99 aa1.03□□□□□ -2.24
USP40-204ENST00000427947 KLK9Q2XQG4 91 aa1.03□□□□□ -2.24
USP40-204ENST00000427947 C9orf62Q8N4C0 152 aa1.03□□□□□ -2.24
USP40-204ENST00000427947 DEFB112Q30KQ8 113 aa1.02□□□□□ -2.25
USP40-204ENST00000427947 NMSQ5H8A3 153 aa1.02□□□□□ -2.25
USP40-204ENST00000427947 PSMG4Q5JS54 123 aa1.02□□□□□ -2.25
USP40-204ENST00000427947 ARHGAP5-AS1Q96IT6 56 aa1.02□□□□□ -2.25
USP40-204ENST00000427947 A0A0D9SG42 100 aa1.01□□□□□ -2.25
USP40-204ENST00000427947 TRBV7-7A0A0K0K1E9 115 aa1.01□□□□□ -2.25
USP40-204ENST00000427947 UMAD1C9J7I0 102 aa1.01□□□□□ -2.25
USP40-204ENST00000427947 M0R1W7 72 aa1.01□□□□□ -2.25
USP40-204ENST00000427947 SERF2P84101 59 aa1.01□□□□□ -2.25
USP40-204ENST00000427947 PIGYQ3MUY2 71 aa1.01□□□□□ -2.25
USP40-204ENST00000427947 HEPN1Q6WQI6 88 aa1.01□□□□□ -2.25
USP40-204ENST00000427947 S100A13Q99584 98 aa1.01□□□□□ -2.25
USP40-204ENST00000427947 TRBV25-1A0A075B6N4 114 aa1□□□□□ -2.25
USP40-204ENST00000427947 C7orf77A4D0Y5 90 aa1□□□□□ -2.25
USP40-204ENST00000427947 H7BZZ5 65 aa1□□□□□ -2.25
USP40-204ENST00000427947 NDUFA3O95167 84 aa1□□□□□ -2.25
USP40-204ENST00000427947 Q5BKY6 102 aa1□□□□□ -2.25
USP40-204ENST00000427947 Q6JHZ5 121 aa1□□□□□ -2.25
USP40-204ENST00000427947 C6orf201Q7Z4U5 140 aa1□□□□□ -2.25
USP40-204ENST00000427947 GAFA1Q96PS6 74 aa1□□□□□ -2.25
USP40-204ENST00000427947 C20orf78Q9BR46 151 aa1□□□□□ -2.25
USP40-204ENST00000427947 TTTY10Q9BZA0 68 aa1□□□□□ -2.25
USP40-204ENST00000427947 FXYD6Q9H0Q3 95 aa1□□□□□ -2.25
USP40-204ENST00000427947 A0A087WWC5 75 aa0.99□□□□□ -2.25
USP40-204ENST00000427947 KANTRA0A1W2PQU2 76 aa0.99□□□□□ -2.25
USP40-204ENST00000427947 CFDP00746 253 aaPredicted RBP0.99□□□□□ -2.25
USP40-204ENST00000427947 MINOS1Q5TGZ0 78 aa0.99□□□□□ -2.25
USP40-204ENST00000427947 WFDC9Q8NEX5 89 aa0.99□□□□□ -2.25
USP40-204ENST00000427947 TMEM167AQ8TBQ9 72 aa0.99□□□□□ -2.25
USP40-204ENST00000427947 LINC00472Q9H8W2 130 aa0.99□□□□□ -2.25
USP40-204ENST00000427947 A0A087WVE0 104 aa0.98□□□□□ -2.25
USP40-204ENST00000427947 FXYD6-FXYD2A0A087WZ82 144 aa0.98□□□□□ -2.25
USP40-204ENST00000427947 TRBV6-1A0A0K0K1D8 114 aa0.98□□□□□ -2.25
USP40-204ENST00000427947 H3BUA1 57 aa0.98□□□□□ -2.25
USP40-204ENST00000427947 K7EP34 96 aa0.98□□□□□ -2.25
USP40-204ENST00000427947 PRCDQ00LT1 54 aa0.98□□□□□ -2.25
USP40-204ENST00000427947 DEFB121Q5J5C9 76 aa0.98□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms