RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 PSORS1C2Q9UIG4 136 aa5.86□□□□□ -1.47
COL6A3-204ENST00000392003 CSAG1Q6PB30 78 aa5.86□□□□□ -1.47
COL6A3-204ENST00000392003 DNAH10Q8IVF4 4471 aa5.86□□□□□ -1.47
COL6A3-204ENST00000392003 PLAC8Q9NZF1 115 aa5.85□□□□□ -1.47
COL6A3-204ENST00000392003 LYSTQ99698 3801 aa5.84□□□□□ -1.47
COL6A3-204ENST00000392003 ZNF861PO60384 105 aa5.84□□□□□ -1.47
COL6A3-204ENST00000392003 CDK2AP2O75956 126 aa5.84□□□□□ -1.47
COL6A3-204ENST00000392003 LINC00483Q53H64 154 aa5.83□□□□□ -1.48
COL6A3-204ENST00000392003 KRTAP29-1A8MX34 341 aaPredicted RBP5.83□□□□□ -1.48
COL6A3-204ENST00000392003 PLA2G1BP04054 148 aaKnown RBP5.83□□□□□ -1.48
COL6A3-204ENST00000392003 CSMD3Q7Z407 3707 aa5.82□□□□□ -1.48
COL6A3-204ENST00000392003 H0Y9P7 68 aa5.82□□□□□ -1.48
COL6A3-204ENST00000392003 DYNC2H1Q8NCM8 4307 aaKnown RBP5.81□□□□□ -1.48
COL6A3-204ENST00000392003 H3BPC8 53 aa5.81□□□□□ -1.48
COL6A3-204ENST00000392003 STARD9Q9P2P6 4700 aa5.81□□□□□ -1.48
COL6A3-204ENST00000392003 COA5Q86WW8 74 aa5.8□□□□□ -1.48
COL6A3-204ENST00000392003 SRRM2Q9UQ35 2752 aaKnown RBP5.79□□□□□ -1.48
COL6A3-204ENST00000392003 ANAPC11Q9NYG5 84 aa5.79□□□□□ -1.48
COL6A3-204ENST00000392003 MMP24-AS1A0A0U1RRL7 71 aa5.78□□□□□ -1.48
COL6A3-204ENST00000392003 KRTAP10-2P60368 255 aa5.78□□□□□ -1.48
COL6A3-204ENST00000392003 IGLV7-43P04211 117 aa5.78□□□□□ -1.48
COL6A3-204ENST00000392003 IGHV6-1A0A0B4J1U7 121 aa5.77□□□□□ -1.49
COL6A3-204ENST00000392003 VPS13DQ5THJ4 4388 aa5.77□□□□□ -1.49
COL6A3-204ENST00000392003 DNAH7Q8WXX0 4024 aa5.76□□□□□ -1.49
COL6A3-204ENST00000392003 C8orf17Q9NRJ1 99 aa5.76□□□□□ -1.49
COL6A3-204ENST00000392003 TP53AIP1Q9HCN2 124 aa5.76□□□□□ -1.49
COL6A3-204ENST00000392003 CIRBP-AS1Q8TBR5 109 aa5.75□□□□□ -1.49
COL6A3-204ENST00000392003 Q96NJ1 140 aa5.75□□□□□ -1.49
COL6A3-204ENST00000392003 A0A1B0GVX0 72 aa5.75□□□□□ -1.49
COL6A3-204ENST00000392003 SPINK6Q6UWN8 80 aa5.73□□□□□ -1.49
COL6A3-204ENST00000392003 SPANXA2-OT1Q8N9U9 137 aa5.73□□□□□ -1.49
COL6A3-204ENST00000392003 LINC01558Q9Y6Z2 57 aa5.73□□□□□ -1.49
COL6A3-204ENST00000392003 SSBP3-AS1Q7Z2R9 100 aa5.72□□□□□ -1.49
COL6A3-204ENST00000392003 KRTAP10-1P60331 282 aa5.71□□□□□ -1.49
COL6A3-204ENST00000392003 ROMO1P60602 79 aa5.71□□□□□ -1.49
COL6A3-204ENST00000392003 MRPL34Q9BQ48 92 aaKnown RBP5.71□□□□□ -1.5
COL6A3-204ENST00000392003 J3QL48 77 aa5.71□□□□□ -1.5
COL6A3-204ENST00000392003 P0C880 135 aa5.7□□□□□ -1.5
COL6A3-204ENST00000392003 PCOTHQ58A44 107 aa5.7□□□□□ -1.5
COL6A3-204ENST00000392003 KMT2AQ03164 3969 aa5.69□□□□□ -1.5
COL6A3-204ENST00000392003 ASB16-AS1Q495Z4 193 aa5.68□□□□□ -1.5
COL6A3-204ENST00000392003 DNAH17Q9UFH2 4485 aa5.65□□□□□ -1.51
COL6A3-204ENST00000392003 IGLV7-46A0A075B6I9 117 aa5.63□□□□□ -1.51
COL6A3-204ENST00000392003 A0A087X002 238 aa5.63□□□□□ -1.51
COL6A3-204ENST00000392003 MIR22HGQ0VDD5 57 aa5.63□□□□□ -1.51
COL6A3-204ENST00000392003 NOTCH2NLQ7Z3S9 236 aa5.63□□□□□ -1.51
COL6A3-204ENST00000392003 Q6ZSA8 131 aa5.62□□□□□ -1.51
COL6A3-204ENST00000392003 DNAH2Q9P225 4427 aa5.61□□□□□ -1.51
COL6A3-204ENST00000392003 SMR3BP02814 79 aaPredicted RBP5.6□□□□□ -1.51
COL6A3-204ENST00000392003 HECTD4Q9Y4D8 3996 aa5.59□□□□□ -1.52
COL6A3-204ENST00000392003 HRES1P13985 223 aa5.58□□□□□ -1.52
COL6A3-204ENST00000392003 KRTAP13-2Q52LG2 175 aa5.58□□□□□ -1.52
COL6A3-204ENST00000392003 FLG2Q5D862 2391 aaPredicted RBP5.57□□□□□ -1.52
COL6A3-204ENST00000392003 DNAH11Q96DT5 4516 aa5.57□□□□□ -1.52
COL6A3-204ENST00000392003 DNAH8Q96JB1 4490 aa5.56□□□□□ -1.52
COL6A3-204ENST00000392003 ALMS1Q8TCU4 4167 aa5.56□□□□□ -1.52
COL6A3-204ENST00000392003 TYMSOSQ8TAI1 123 aa5.55□□□□□ -1.52
COL6A3-204ENST00000392003 FAM229AH3BQW9 127 aa5.55□□□□□ -1.52
COL6A3-204ENST00000392003 Q5W150 140 aa5.54□□□□□ -1.52
COL6A3-204ENST00000392003 KRTAP1-4P0C5Y4 121 aa5.52□□□□□ -1.53
COL6A3-204ENST00000392003 CRIPTQ9P021 101 aa5.51□□□□□ -1.53
COL6A3-204ENST00000392003 SPINK1P00995 79 aa5.5□□□□□ -1.53
COL6A3-204ENST00000392003 NDUFAF8A1L188 74 aa5.5□□□□□ -1.53
COL6A3-204ENST00000392003 KRTAP13-3Q3SY46 172 aa5.5□□□□□ -1.53
COL6A3-204ENST00000392003 HYDINQ4G0P3 5121 aa5.49□□□□□ -1.53
COL6A3-204ENST00000392003 A0A1B0GU69 56 aa5.49□□□□□ -1.53
COL6A3-204ENST00000392003 DNAH6Q9C0G6 4158 aa5.49□□□□□ -1.53
COL6A3-204ENST00000392003 ACYP2P14621 99 aa5.49□□□□□ -1.53
COL6A3-204ENST00000392003 SPATA8Q6RVD6 105 aa5.49□□□□□ -1.53
COL6A3-204ENST00000392003 KRTAP25-1Q3LHN0 102 aa5.48□□□□□ -1.53
COL6A3-204ENST00000392003 DNAH5Q8TE73 4624 aa5.48□□□□□ -1.53
COL6A3-204ENST00000392003 KRTAP16-1A8MUX0 517 aa5.47□□□□□ -1.53
COL6A3-204ENST00000392003 A8MUU9 505 aa5.47□□□□□ -1.53
COL6A3-204ENST00000392003 LINC00304Q8N9R0 145 aa5.46□□□□□ -1.53
COL6A3-204ENST00000392003 FRAS1Q86XX4 4008 aa5.46□□□□□ -1.54
COL6A3-204ENST00000392003 IGKV2-30P06310 120 aa5.45□□□□□ -1.54
COL6A3-204ENST00000392003 LRP1BQ9NZR2 4599 aa5.44□□□□□ -1.54
COL6A3-204ENST00000392003 A0A1B0GVY2 172 aa5.44□□□□□ -1.54
COL6A3-204ENST00000392003 IGKV2D-30A0A075B6S6 120 aa5.43□□□□□ -1.54
COL6A3-204ENST00000392003 UQCR11O14957 56 aa5.43□□□□□ -1.54
COL6A3-204ENST00000392003 SACSQ9NZJ4 4579 aa5.42□□□□□ -1.54
COL6A3-204ENST00000392003 DMAC1Q96GE9 116 aa5.42□□□□□ -1.54
COL6A3-204ENST00000392003 RPS29P62273 56 aaKnown RBP5.41□□□□□ -1.54
COL6A3-204ENST00000392003 FAT2Q9NYQ8 4349 aa5.4□□□□□ -1.54
COL6A3-204ENST00000392003 C20orf166-AS1Q96NR2 134 aa5.39□□□□□ -1.55
COL6A3-204ENST00000392003 PKD1P98161 4303 aa5.37□□□□□ -1.55
COL6A3-204ENST00000392003 DYNC1H1Q14204 4646 aaKnown RBP5.37□□□□□ -1.55
COL6A3-204ENST00000392003 PKHD1P08F94 4074 aa5.35□□□□□ -1.55
COL6A3-204ENST00000392003 VPS13BQ7Z7G8 4022 aa5.35□□□□□ -1.55
COL6A3-204ENST00000392003 DMBT1Q9UGM3 2413 aaPredicted RBP5.33□□□□□ -1.56
COL6A3-204ENST00000392003 KMT2CQ8NEZ4 4911 aaKnown RBP5.33□□□□□ -1.56
COL6A3-204ENST00000392003 Q5VSD8 79 aa5.33□□□□□ -1.56
COL6A3-204ENST00000392003 C9orf92A6NGG3 77 aa5.32□□□□□ -1.56
COL6A3-204ENST00000392003 FAT1Q14517 4588 aa5.31□□□□□ -1.56
COL6A3-204ENST00000392003 SPINT4Q6UDR6 99 aa5.31□□□□□ -1.56
COL6A3-204ENST00000392003 RYR2Q92736 4967 aa5.3□□□□□ -1.56
COL6A3-204ENST00000392003 LUZP6Q538Z0 58 aa5.3□□□□□ -1.56
COL6A3-204ENST00000392003 Q8N1X5 172 aa5.27□□□□□ -1.57
COL6A3-204ENST00000392003 KRTAP10-4P60372 401 aaPredicted RBP5.27□□□□□ -1.57
COL6A3-204ENST00000392003 APOBP04114 4563 aaKnown RBP5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms