RNA–Protein interactions for RNA: ENST00000356000.7

RTN3-205, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,645 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-205ENST00000356000 KRTAP13-3Q3SY46 172 aa9.4□□□□□ -0.9
RTN3-205ENST00000356000 KRTAP25-1Q3LHN0 102 aa9.39□□□□□ -0.91
RTN3-205ENST00000356000 A0A096LNI7 61 aa9.39□□□□□ -0.91
RTN3-205ENST00000356000 Q5W150 140 aa9.37□□□□□ -0.91
RTN3-205ENST00000356000 CASC10Q5T4H9 136 aa9.37□□□□□ -0.91
RTN3-205ENST00000356000 DNAH10OSP0CZ25 163 aa9.33□□□□□ -0.92
RTN3-205ENST00000356000 NOTCH2NLQ7Z3S9 236 aa9.33□□□□□ -0.92
RTN3-205ENST00000356000 CDK2AP2O75956 126 aa9.31□□□□□ -0.92
RTN3-205ENST00000356000 TGP01266 2768 aa9.29□□□□□ -0.92
RTN3-205ENST00000356000 KRTAP11-1Q8IUC1 163 aa9.27□□□□□ -0.93
RTN3-205ENST00000356000 NOTCH1P46531 2555 aa9.27□□□□□ -0.93
RTN3-205ENST00000356000 IGLV7-43P04211 117 aa9.27□□□□□ -0.93
RTN3-205ENST00000356000 P0C880 135 aa9.26□□□□□ -0.93
RTN3-205ENST00000356000 IGLV5-52A0A0A0MRZ9 124 aa9.25□□□□□ -0.93
RTN3-205ENST00000356000 SRRM2Q9UQ35 2752 aaKnown RBP9.25□□□□□ -0.93
RTN3-205ENST00000356000 A8MUU9 505 aa9.23□□□□□ -0.93
RTN3-205ENST00000356000 DNAH9Q9NYC9 4486 aa9.22□□□□□ -0.93
RTN3-205ENST00000356000 DYNC2H1Q8NCM8 4307 aaKnown RBP9.21□□□□□ -0.94
RTN3-205ENST00000356000 IGLV9-49A0A0B4J1Y8 123 aa9.19□□□□□ -0.94
RTN3-205ENST00000356000 CHTF8P0CG12 524 aa9.19□□□□□ -0.94
RTN3-205ENST00000356000 LINC00304Q8N9R0 145 aa9.17□□□□□ -0.94
RTN3-205ENST00000356000 CSMD3Q7Z407 3707 aa9.15□□□□□ -0.95
RTN3-205ENST00000356000 KRTAP13-1Q8IUC0 172 aa9.14□□□□□ -0.95
RTN3-205ENST00000356000 LINC00483Q53H64 154 aa9.14□□□□□ -0.95
RTN3-205ENST00000356000 DNAH1Q9P2D7 4330 aa9.13□□□□□ -0.95
RTN3-205ENST00000356000 IGKV2-30P06310 120 aa9.12□□□□□ -0.95
RTN3-205ENST00000356000 NUPR2A6NF83 97 aa9.08□□□□□ -0.96
RTN3-205ENST00000356000 FAM229AH3BQW9 127 aa9.07□□□□□ -0.96
RTN3-205ENST00000356000 H0YAA0 97 aa9.05□□□□□ -0.96
RTN3-205ENST00000356000 LY6G6CO95867 125 aa9.05□□□□□ -0.96
RTN3-205ENST00000356000 KMT2CQ8NEZ4 4911 aaKnown RBP9.05□□□□□ -0.96
RTN3-205ENST00000356000 DNAH7Q8WXX0 4024 aa9.04□□□□□ -0.96
RTN3-205ENST00000356000 A0A0A0MQY5 61 aa9.03□□□□□ -0.96
RTN3-205ENST00000356000 Q6ZSA8 131 aa9.02□□□□□ -0.97
RTN3-205ENST00000356000 SPINK6Q6UWN8 80 aa9.01□□□□□ -0.97
RTN3-205ENST00000356000 RYR3Q15413 4870 aa9.01□□□□□ -0.97
RTN3-205ENST00000356000 TENM3Q9P273 2699 aa9□□□□□ -0.97
RTN3-205ENST00000356000 HUWE1Q7Z6Z7 4374 aaKnown RBP8.99□□□□□ -0.97
RTN3-205ENST00000356000 COL7A1Q02388 2944 aa8.98□□□□□ -0.97
RTN3-205ENST00000356000 RYR2Q92736 4967 aa8.98□□□□□ -0.97
RTN3-205ENST00000356000 BIRC6Q9NR09 4857 aa8.98□□□□□ -0.97
RTN3-205ENST00000356000 PANO1I0J062 215 aa8.96□□□□□ -0.97
RTN3-205ENST00000356000 IGKV2D-30A0A075B6S6 120 aa8.96□□□□□ -0.98
RTN3-205ENST00000356000 CRIPTQ9P021 101 aa8.94□□□□□ -0.98
RTN3-205ENST00000356000 KRTAP16-1A8MUX0 517 aa8.92□□□□□ -0.98
RTN3-205ENST00000356000 SACSQ9NZJ4 4579 aa8.9□□□□□ -0.98
RTN3-205ENST00000356000 SPINK1P00995 79 aa8.88□□□□□ -0.99
RTN3-205ENST00000356000 C20orf166-AS1Q96NR2 134 aa8.88□□□□□ -0.99
RTN3-205ENST00000356000 SSBP3-AS1Q7Z2R9 100 aa8.88□□□□□ -0.99
RTN3-205ENST00000356000 NDUFAF8A1L188 74 aa8.87□□□□□ -0.99
RTN3-205ENST00000356000 PSORS1C2Q9UIG4 136 aa8.87□□□□□ -0.99
RTN3-205ENST00000356000 A0A087WTM6 91 aa8.86□□□□□ -0.99
RTN3-205ENST00000356000 C14orf177Q52M58 125 aa8.86□□□□□ -0.99
RTN3-205ENST00000356000 ANAPC11Q9NYG5 84 aa8.86□□□□□ -0.99
RTN3-205ENST00000356000 FLG2Q5D862 2391 aaPredicted RBP8.86□□□□□ -0.99
RTN3-205ENST00000356000 LYSTQ99698 3801 aa8.85□□□□□ -0.99
RTN3-205ENST00000356000 A0A1B0GU33 70 aa8.84□□□□□ -0.99
RTN3-205ENST00000356000 SPINT4Q6UDR6 99 aa8.84□□□□□ -0.99
RTN3-205ENST00000356000 KRTAP1-5Q9BYS1 174 aa8.84□□□□□ -0.99
RTN3-205ENST00000356000 STAB2Q8WWQ8 2551 aa8.83□□□□□ -1
RTN3-205ENST00000356000 DNAH10Q8IVF4 4471 aa8.83□□□□□ -1
RTN3-205ENST00000356000 H1FX-AS1Q4G0G2 97 aa8.8□□□□□ -1
RTN3-205ENST00000356000 KRTAP15-1Q3LI76 137 aa8.79□□□□□ -1
RTN3-205ENST00000356000 TYMSOSQ8TAI1 123 aa8.79□□□□□ -1
RTN3-205ENST00000356000 K7ERS5 55 aa8.78□□□□□ -1
RTN3-205ENST00000356000 DNAH6Q9C0G6 4158 aa8.76□□□□□ -1.01
RTN3-205ENST00000356000 STARD9Q9P2P6 4700 aa8.76□□□□□ -1.01
RTN3-205ENST00000356000 PLECQ15149 4684 aaKnown RBP8.75□□□□□ -1.01
RTN3-205ENST00000356000 APLNQ9ULZ1 77 aa8.75□□□□□ -1.01
RTN3-205ENST00000356000 CIRBP-AS1Q8TBR5 109 aa8.74□□□□□ -1.01
RTN3-205ENST00000356000 Q8N1X5 172 aa8.72□□□□□ -1.01
RTN3-205ENST00000356000 SPACA4Q8TDM5 124 aa8.7□□□□□ -1.02
RTN3-205ENST00000356000 TPRXLQ17RH7 258 aa8.69□□□□□ -1.02
RTN3-205ENST00000356000 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.69□□□□□ -1.02
RTN3-205ENST00000356000 EPPK1P58107 5090 aaKnown RBP8.69□□□□□ -1.02
RTN3-205ENST00000356000 A0A1B0GVY2 172 aa8.65□□□□□ -1.02
RTN3-205ENST00000356000 FRAS1Q86XX4 4008 aa8.65□□□□□ -1.03
RTN3-205ENST00000356000 DNAH8Q96JB1 4490 aa8.64□□□□□ -1.03
RTN3-205ENST00000356000 KRTAP17-1Q9BYP8 105 aa8.63□□□□□ -1.03
RTN3-205ENST00000356000 HERC2O95714 4834 aa8.61□□□□□ -1.03
RTN3-205ENST00000356000 UBE2DNLQ8IWF7 75 aa8.57□□□□□ -1.04
RTN3-205ENST00000356000 HYDINQ4G0P3 5121 aa8.57□□□□□ -1.04
RTN3-205ENST00000356000 COX6B2Q6YFQ2 88 aa8.56□□□□□ -1.04
RTN3-205ENST00000356000 VPS13DQ5THJ4 4388 aa8.54□□□□□ -1.04
RTN3-205ENST00000356000 DNAH17Q9UFH2 4485 aa8.52□□□□□ -1.05
RTN3-205ENST00000356000 HECTD4Q9Y4D8 3996 aa8.5□□□□□ -1.05
RTN3-205ENST00000356000 C10orf95Q9H7T3 257 aa8.5□□□□□ -1.05
RTN3-205ENST00000356000 RPL37P61927 97 aaKnown RBP8.5□□□□□ -1.05
RTN3-205ENST00000356000 Q6ZRN7 208 aaPredicted RBP8.47□□□□□ -1.05
RTN3-205ENST00000356000 NBDYA0A0U1RRE5 68 aa8.47□□□□□ -1.05
RTN3-205ENST00000356000 KRTAP3-1Q9BYR8 98 aa8.45□□□□□ -1.06
RTN3-205ENST00000356000 LUZP6Q538Z0 58 aa8.44□□□□□ -1.06
RTN3-205ENST00000356000 DYNC1H1Q14204 4646 aaKnown RBP8.42□□□□□ -1.06
RTN3-205ENST00000356000 DNAH11Q96DT5 4516 aa8.42□□□□□ -1.06
RTN3-205ENST00000356000 KRTAP13-2Q52LG2 175 aa8.38□□□□□ -1.07
RTN3-205ENST00000356000 KMT2AQ03164 3969 aa8.36□□□□□ -1.07
RTN3-205ENST00000356000 FAT2Q9NYQ8 4349 aa8.32□□□□□ -1.08
RTN3-205ENST00000356000 DNAH2Q9P225 4427 aa8.29□□□□□ -1.08
RTN3-205ENST00000356000 KRTAP13-4Q3LI77 160 aa8.29□□□□□ -1.08
RTN3-205ENST00000356000 A0A0D9SG42 100 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 160.4 ms