RNA–Protein interactions for RNA: ENST00000330949.2

SOX1-201, Transcript of SRY-box 1, humanhuman

APPRIS P1 BASIC

Gene SOX1, Length 2,842 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1-201ENST00000330949 H3BS24 57 aa14.6□□□□□ -0.07
SOX1-201ENST00000330949 UBE2DNLQ8IWF7 75 aa14.59□□□□□ -0.07
SOX1-201ENST00000330949 KRTAP13-1Q8IUC0 172 aa14.56□□□□□ -0.08
SOX1-201ENST00000330949 RTL8CO15255 209 aa14.55□□□□□ -0.08
SOX1-201ENST00000330949 SPATA8Q6RVD6 105 aa14.54□□□□□ -0.08
SOX1-201ENST00000330949 A0A1B0GU69 56 aa14.53□□□□□ -0.08
SOX1-201ENST00000330949 DNHD1Q96M86 4753 aa14.52□□□□□ -0.08
SOX1-201ENST00000330949 C14orf177Q52M58 125 aa14.51□□□□□ -0.09
SOX1-201ENST00000330949 PLECQ15149 4684 aaKnown RBP14.51□□□□□ -0.09
SOX1-201ENST00000330949 NOTCH2NLQ7Z3S9 236 aa14.51□□□□□ -0.09
SOX1-201ENST00000330949 KRTAP13-3Q3SY46 172 aa14.48□□□□□ -0.09
SOX1-201ENST00000330949 Q5W150 140 aa14.48□□□□□ -0.09
SOX1-201ENST00000330949 ALMS1Q8TCU4 4167 aa14.48□□□□□ -0.09
SOX1-201ENST00000330949 DMAC1Q96GE9 116 aa14.47□□□□□ -0.09
SOX1-201ENST00000330949 LINC00483Q53H64 154 aa14.45□□□□□ -0.1
SOX1-201ENST00000330949 MIR22HGQ0VDD5 57 aa14.42□□□□□ -0.1
SOX1-201ENST00000330949 UQCR11O14957 56 aa14.4□□□□□ -0.1
SOX1-201ENST00000330949 PANO1I0J062 215 aa14.38□□□□□ -0.11
SOX1-201ENST00000330949 ZNF706Q9Y5V0 76 aaPredicted RBP14.37□□□□□ -0.11
SOX1-201ENST00000330949 WWC2-AS2Q96NR7 200 aa14.35□□□□□ -0.11
SOX1-201ENST00000330949 APLNQ9ULZ1 77 aa14.32□□□□□ -0.12
SOX1-201ENST00000330949 RETNLBQ9BQ08 111 aa14.31□□□□□ -0.12
SOX1-201ENST00000330949 STARD9Q9P2P6 4700 aa14.28□□□□□ -0.12
SOX1-201ENST00000330949 DYNC2H1Q8NCM8 4307 aaKnown RBP14.27□□□□□ -0.12
SOX1-201ENST00000330949 SPINK6Q6UWN8 80 aa14.27□□□□□ -0.12
SOX1-201ENST00000330949 CSAG1Q6PB30 78 aa14.26□□□□□ -0.13
SOX1-201ENST00000330949 FRAS1Q86XX4 4008 aa14.22□□□□□ -0.13
SOX1-201ENST00000330949 KMT2AQ03164 3969 aa14.21□□□□□ -0.13
SOX1-201ENST00000330949 TGP01266 2768 aa14.2□□□□□ -0.14
SOX1-201ENST00000330949 PRKDCP78527 4128 aaKnown RBP14.2□□□□□ -0.14
SOX1-201ENST00000330949 FAM229AH3BQW9 127 aa14.19□□□□□ -0.14
SOX1-201ENST00000330949 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP14.19□□□□□ -0.14
SOX1-201ENST00000330949 NBDYA0A0U1RRE5 68 aa14.18□□□□□ -0.14
SOX1-201ENST00000330949 ANAPC11Q9NYG5 84 aa14.16□□□□□ -0.14
SOX1-201ENST00000330949 SPACA4Q8TDM5 124 aa14.15□□□□□ -0.14
SOX1-201ENST00000330949 HECTD4Q9Y4D8 3996 aa14.14□□□□□ -0.15
SOX1-201ENST00000330949 IGKV2-30P06310 120 aa14.14□□□□□ -0.15
SOX1-201ENST00000330949 DNAH2Q9P225 4427 aa14.09□□□□□ -0.15
SOX1-201ENST00000330949 ZNF861PO60384 105 aa14.08□□□□□ -0.16
SOX1-201ENST00000330949 PSORS1C2Q9UIG4 136 aa14.07□□□□□ -0.16
SOX1-201ENST00000330949 IGLV5-52A0A0A0MRZ9 124 aa14.06□□□□□ -0.16
SOX1-201ENST00000330949 Q6ZRN7 208 aaPredicted RBP14.06□□□□□ -0.16
SOX1-201ENST00000330949 VPS13DQ5THJ4 4388 aa14.06□□□□□ -0.16
SOX1-201ENST00000330949 MEGF8Q7Z7M0 2845 aa14.02□□□□□ -0.17
SOX1-201ENST00000330949 IGLV7-43P04211 117 aa14.02□□□□□ -0.17
SOX1-201ENST00000330949 CIRBP-AS1Q8TBR5 109 aa14□□□□□ -0.17
SOX1-201ENST00000330949 DNAH8Q96JB1 4490 aa13.99□□□□□ -0.17
SOX1-201ENST00000330949 FBN3Q75N90 2809 aa13.97□□□□□ -0.17
SOX1-201ENST00000330949 NUPR2A6NF83 97 aa13.96□□□□□ -0.18
SOX1-201ENST00000330949 DNAH17Q9UFH2 4485 aa13.95□□□□□ -0.18
SOX1-201ENST00000330949 A0A087WTM6 91 aa13.94□□□□□ -0.18
SOX1-201ENST00000330949 C1orf134Q5TEV5 83 aa13.88□□□□□ -0.19
SOX1-201ENST00000330949 SSBP3-AS1Q7Z2R9 100 aa13.88□□□□□ -0.19
SOX1-201ENST00000330949 DNAH6Q9C0G6 4158 aa13.88□□□□□ -0.19
SOX1-201ENST00000330949 IGKV2D-30A0A075B6S6 120 aa13.86□□□□□ -0.19
SOX1-201ENST00000330949 KRTAP25-1Q3LHN0 102 aa13.8□□□□□ -0.2
SOX1-201ENST00000330949 KRTAP16-1A8MUX0 517 aa13.78□□□□□ -0.2
SOX1-201ENST00000330949 A8MUU9 505 aa13.78□□□□□ -0.2
SOX1-201ENST00000330949 LY6G6CO95867 125 aa13.77□□□□□ -0.2
SOX1-201ENST00000330949 SPINK1P00995 79 aa13.74□□□□□ -0.21
SOX1-201ENST00000330949 ROMO1P60602 79 aa13.73□□□□□ -0.21
SOX1-201ENST00000330949 DNAH11Q96DT5 4516 aa13.72□□□□□ -0.21
SOX1-201ENST00000330949 H0YAA0 97 aa13.67□□□□□ -0.22
SOX1-201ENST00000330949 LINC00304Q8N9R0 145 aa13.67□□□□□ -0.22
SOX1-201ENST00000330949 Q6ZSA8 131 aa13.66□□□□□ -0.22
SOX1-201ENST00000330949 DNAH5Q8TE73 4624 aa13.65□□□□□ -0.22
SOX1-201ENST00000330949 Q8N1X5 172 aa13.57□□□□□ -0.24
SOX1-201ENST00000330949 KRTAP10-2P60368 255 aa13.55□□□□□ -0.24
SOX1-201ENST00000330949 LRP1BQ9NZR2 4599 aa13.55□□□□□ -0.24
SOX1-201ENST00000330949 HYDINQ4G0P3 5121 aa13.54□□□□□ -0.24
SOX1-201ENST00000330949 A0A1B0GU33 70 aa13.51□□□□□ -0.25
SOX1-201ENST00000330949 KRTAP13-2Q52LG2 175 aa13.49□□□□□ -0.25
SOX1-201ENST00000330949 TYMSOSQ8TAI1 123 aa13.45□□□□□ -0.26
SOX1-201ENST00000330949 KRTAP21-3Q3LHN1 58 aa13.42□□□□□ -0.26
SOX1-201ENST00000330949 H1FX-AS1Q4G0G2 97 aa13.41□□□□□ -0.26
SOX1-201ENST00000330949 PKD1P98161 4303 aa13.41□□□□□ -0.26
SOX1-201ENST00000330949 K7ERS5 55 aa13.38□□□□□ -0.27
SOX1-201ENST00000330949 VPS13BQ7Z7G8 4022 aa13.37□□□□□ -0.27
SOX1-201ENST00000330949 FAT2Q9NYQ8 4349 aa13.36□□□□□ -0.27
SOX1-201ENST00000330949 KRTAP10-1P60331 282 aa13.32□□□□□ -0.28
SOX1-201ENST00000330949 FLG2Q5D862 2391 aaPredicted RBP13.29□□□□□ -0.28
SOX1-201ENST00000330949 P0C880 135 aa13.29□□□□□ -0.28
SOX1-201ENST00000330949 CRIPTQ9P021 101 aa13.26□□□□□ -0.29
SOX1-201ENST00000330949 PKHD1P08F94 4074 aa13.25□□□□□ -0.29
SOX1-201ENST00000330949 KRTAP1-4P0C5Y4 121 aa13.17□□□□□ -0.3
SOX1-201ENST00000330949 KRTAP3-1Q9BYR8 98 aa13.12□□□□□ -0.31
SOX1-201ENST00000330949 COX6B2Q6YFQ2 88 aa13.1□□□□□ -0.31
SOX1-201ENST00000330949 SPINT4Q6UDR6 99 aa13.02□□□□□ -0.33
SOX1-201ENST00000330949 SMR3BP02814 79 aaPredicted RBP13.01□□□□□ -0.33
SOX1-201ENST00000330949 SACSQ9NZJ4 4579 aa12.98□□□□□ -0.33
SOX1-201ENST00000330949 FAT1Q14517 4588 aa12.96□□□□□ -0.33
SOX1-201ENST00000330949 RPL37P61927 97 aaKnown RBP12.95□□□□□ -0.34
SOX1-201ENST00000330949 KMT2CQ8NEZ4 4911 aaKnown RBP12.95□□□□□ -0.34
SOX1-201ENST00000330949 C20orf166-AS1Q96NR2 134 aa12.94□□□□□ -0.34
SOX1-201ENST00000330949 RPS29P62273 56 aaKnown RBP12.94□□□□□ -0.34
SOX1-201ENST00000330949 DYNC1H1Q14204 4646 aaKnown RBP12.88□□□□□ -0.35
SOX1-201ENST00000330949 TPRXLQ17RH7 258 aa12.88□□□□□ -0.35
SOX1-201ENST00000330949 C9orf92A6NGG3 77 aa12.86□□□□□ -0.35
SOX1-201ENST00000330949 NDUFAF8A1L188 74 aa12.76□□□□□ -0.37
SOX1-201ENST00000330949 KRTAP15-1Q3LI76 137 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 137.8 ms