RNA–Protein interactions for RNA: ENST00000309428.9

RETREG3-201, Transcript of reticulophagy regulator family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RETREG3, Length 3,759 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-201ENST00000309428 A0A1B0GVX0 72 aa7.73□□□□□ -1.17
RETREG3-201ENST00000309428 C1orf134Q5TEV5 83 aa7.73□□□□□ -1.17
RETREG3-201ENST00000309428 CDC42SE1Q9NRR8 79 aa7.73□□□□□ -1.17
RETREG3-201ENST00000309428 C7orf65Q6ZTY9 151 aa7.72□□□□□ -1.17
RETREG3-201ENST00000309428 LINC00472Q9H8W2 130 aa7.72□□□□□ -1.17
RETREG3-201ENST00000309428 IGLV7-46A0A075B6I9 117 aa7.71□□□□□ -1.17
RETREG3-201ENST00000309428 HRES1P13985 223 aa7.69□□□□□ -1.18
RETREG3-201ENST00000309428 KRTAP29-1A8MX34 341 aaPredicted RBP7.68□□□□□ -1.18
RETREG3-201ENST00000309428 Q75L30 129 aa7.68□□□□□ -1.18
RETREG3-201ENST00000309428 A0A087X002 238 aa7.66□□□□□ -1.18
RETREG3-201ENST00000309428 NOTCH2NLQ7Z3S9 236 aa7.66□□□□□ -1.18
RETREG3-201ENST00000309428 PLECQ15149 4684 aaKnown RBP7.65□□□□□ -1.18
RETREG3-201ENST00000309428 LINC00313P59037 77 aa7.65□□□□□ -1.19
RETREG3-201ENST00000309428 CMYA5Q8N3K9 4069 aa7.65□□□□□ -1.19
RETREG3-201ENST00000309428 C8orf87E5RJ46 101 aa7.64□□□□□ -1.19
RETREG3-201ENST00000309428 DNAH7Q8WXX0 4024 aa7.63□□□□□ -1.19
RETREG3-201ENST00000309428 DNAH9Q9NYC9 4486 aa7.63□□□□□ -1.19
RETREG3-201ENST00000309428 LCE6AA0A183 80 aa7.63□□□□□ -1.19
RETREG3-201ENST00000309428 SMR3BP02814 79 aaPredicted RBP7.62□□□□□ -1.19
RETREG3-201ENST00000309428 DNHD1Q96M86 4753 aa7.62□□□□□ -1.19
RETREG3-201ENST00000309428 KRTAP10-2P60368 255 aa7.61□□□□□ -1.19
RETREG3-201ENST00000309428 MIR22HGQ0VDD5 57 aa7.61□□□□□ -1.19
RETREG3-201ENST00000309428 LINC01558Q9Y6Z2 57 aa7.6□□□□□ -1.19
RETREG3-201ENST00000309428 ADM2Q7Z4H4 148 aa7.59□□□□□ -1.2
RETREG3-201ENST00000309428 Q8N1X5 172 aa7.58□□□□□ -1.2
RETREG3-201ENST00000309428 UQCR11O14957 56 aa7.58□□□□□ -1.2
RETREG3-201ENST00000309428 ZNF861PO60384 105 aa7.58□□□□□ -1.2
RETREG3-201ENST00000309428 Q6ZRN7 208 aaPredicted RBP7.58□□□□□ -1.2
RETREG3-201ENST00000309428 PRKDCP78527 4128 aaKnown RBP7.57□□□□□ -1.2
RETREG3-201ENST00000309428 Q5W150 140 aa7.55□□□□□ -1.2
RETREG3-201ENST00000309428 Q96NJ1 140 aa7.55□□□□□ -1.2
RETREG3-201ENST00000309428 FAM229AH3BQW9 127 aa7.54□□□□□ -1.2
RETREG3-201ENST00000309428 STARD9Q9P2P6 4700 aa7.54□□□□□ -1.2
RETREG3-201ENST00000309428 KMT2AQ03164 3969 aa7.53□□□□□ -1.2
RETREG3-201ENST00000309428 SPRR1BP22528 89 aa7.5□□□□□ -1.21
RETREG3-201ENST00000309428 IGLV7-43P04211 117 aa7.49□□□□□ -1.21
RETREG3-201ENST00000309428 A6NN06 94 aa7.49□□□□□ -1.21
RETREG3-201ENST00000309428 CRIPTQ9P021 101 aa7.49□□□□□ -1.21
RETREG3-201ENST00000309428 WWC2-AS2Q96NR7 200 aa7.48□□□□□ -1.21
RETREG3-201ENST00000309428 K7ERS5 55 aa7.48□□□□□ -1.21
RETREG3-201ENST00000309428 CSAG1Q6PB30 78 aa7.46□□□□□ -1.22
RETREG3-201ENST00000309428 KRTAP10-1P60331 282 aa7.45□□□□□ -1.22
RETREG3-201ENST00000309428 LINC01554Q52M75 96 aa7.45□□□□□ -1.22
RETREG3-201ENST00000309428 FRAS1Q86XX4 4008 aa7.44□□□□□ -1.22
RETREG3-201ENST00000309428 PLA2G1BP04054 148 aaKnown RBP7.44□□□□□ -1.22
RETREG3-201ENST00000309428 C9orf92A6NGG3 77 aa7.44□□□□□ -1.22
RETREG3-201ENST00000309428 H3BS24 57 aa7.42□□□□□ -1.22
RETREG3-201ENST00000309428 SSBP3-AS1Q7Z2R9 100 aa7.42□□□□□ -1.22
RETREG3-201ENST00000309428 Q6ZR54 194 aa7.41□□□□□ -1.22
RETREG3-201ENST00000309428 TYMSOSQ8TAI1 123 aa7.41□□□□□ -1.22
RETREG3-201ENST00000309428 DNAH3Q8TD57 4116 aa7.4□□□□□ -1.22
RETREG3-201ENST00000309428 PLAC8Q9NZF1 115 aa7.4□□□□□ -1.23
RETREG3-201ENST00000309428 KRTAP13-1Q8IUC0 172 aa7.39□□□□□ -1.23
RETREG3-201ENST00000309428 DNAH1Q9P2D7 4330 aa7.39□□□□□ -1.23
RETREG3-201ENST00000309428 DNAH11Q96DT5 4516 aa7.39□□□□□ -1.23
RETREG3-201ENST00000309428 A0A0D9SG42 100 aa7.31□□□□□ -1.24
RETREG3-201ENST00000309428 DMAC1Q96GE9 116 aa7.3□□□□□ -1.24
RETREG3-201ENST00000309428 DNAH6Q9C0G6 4158 aa7.29□□□□□ -1.24
RETREG3-201ENST00000309428 DNAH8Q96JB1 4490 aa7.28□□□□□ -1.24
RETREG3-201ENST00000309428 KRTAP13-2Q52LG2 175 aa7.28□□□□□ -1.24
RETREG3-201ENST00000309428 SPINT4Q6UDR6 99 aa7.27□□□□□ -1.25
RETREG3-201ENST00000309428 VPS13DQ5THJ4 4388 aa7.27□□□□□ -1.25
RETREG3-201ENST00000309428 LINC00483Q53H64 154 aa7.26□□□□□ -1.25
RETREG3-201ENST00000309428 DNAH2Q9P225 4427 aa7.23□□□□□ -1.25
RETREG3-201ENST00000309428 DNAH17Q9UFH2 4485 aa7.22□□□□□ -1.25
RETREG3-201ENST00000309428 A0A1B0GU33 70 aa7.21□□□□□ -1.25
RETREG3-201ENST00000309428 SPATA8Q6RVD6 105 aa7.2□□□□□ -1.26
RETREG3-201ENST00000309428 LINC00304Q8N9R0 145 aa7.2□□□□□ -1.26
RETREG3-201ENST00000309428 LRP1BQ9NZR2 4599 aa7.2□□□□□ -1.26
RETREG3-201ENST00000309428 HYDINQ4G0P3 5121 aa7.18□□□□□ -1.26
RETREG3-201ENST00000309428 HECTD4Q9Y4D8 3996 aa7.16□□□□□ -1.26
RETREG3-201ENST00000309428 FAT1Q14517 4588 aa7.16□□□□□ -1.26
RETREG3-201ENST00000309428 ASB16-AS1Q495Z4 193 aa7.12□□□□□ -1.27
RETREG3-201ENST00000309428 KRTAP1-4P0C5Y4 121 aa7.07□□□□□ -1.28
RETREG3-201ENST00000309428 PKHD1P08F94 4074 aa7.07□□□□□ -1.28
RETREG3-201ENST00000309428 DNAH5Q8TE73 4624 aa7.06□□□□□ -1.28
RETREG3-201ENST00000309428 VPS13BQ7Z7G8 4022 aa7.02□□□□□ -1.29
RETREG3-201ENST00000309428 MYCBP2O75592 4640 aa7□□□□□ -1.29
RETREG3-201ENST00000309428 DYNC2H1Q8NCM8 4307 aaKnown RBP6.98□□□□□ -1.29
RETREG3-201ENST00000309428 Q6ZSA8 131 aa6.98□□□□□ -1.29
RETREG3-201ENST00000309428 H1FX-AS1Q4G0G2 97 aa6.97□□□□□ -1.29
RETREG3-201ENST00000309428 KRTAP25-1Q3LHN0 102 aa6.95□□□□□ -1.3
RETREG3-201ENST00000309428 KRTAP13-3Q3SY46 172 aa6.95□□□□□ -1.3
RETREG3-201ENST00000309428 FAT2Q9NYQ8 4349 aa6.94□□□□□ -1.3
RETREG3-201ENST00000309428 H0YAA0 97 aa6.92□□□□□ -1.3
RETREG3-201ENST00000309428 ALMS1Q8TCU4 4167 aa6.9□□□□□ -1.3
RETREG3-201ENST00000309428 DYNC1H1Q14204 4646 aaKnown RBP6.89□□□□□ -1.31
RETREG3-201ENST00000309428 A8MUU9 505 aa6.88□□□□□ -1.31
RETREG3-201ENST00000309428 ROMO1P60602 79 aa6.88□□□□□ -1.31
RETREG3-201ENST00000309428 KRTAP16-1A8MUX0 517 aa6.88□□□□□ -1.31
RETREG3-201ENST00000309428 KMT2CQ8NEZ4 4911 aaKnown RBP6.86□□□□□ -1.31
RETREG3-201ENST00000309428 LRP1Q07954 4544 aaKnown RBP6.86□□□□□ -1.31
RETREG3-201ENST00000309428 RPL37P61927 97 aaKnown RBP6.86□□□□□ -1.31
RETREG3-201ENST00000309428 Q5VSD8 79 aa6.86□□□□□ -1.31
RETREG3-201ENST00000309428 COX6B2Q6YFQ2 88 aa6.85□□□□□ -1.31
RETREG3-201ENST00000309428 C10orf95Q9H7T3 257 aa6.84□□□□□ -1.31
RETREG3-201ENST00000309428 FAT3Q8TDW7 4589 aa6.84□□□□□ -1.32
RETREG3-201ENST00000309428 SACSQ9NZJ4 4579 aa6.79□□□□□ -1.32
RETREG3-201ENST00000309428 NDUFAF8A1L188 74 aa6.79□□□□□ -1.32
RETREG3-201ENST00000309428 KIAA1109Q2LD37 5005 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms