RNA–Protein interactions for RNA: ENST00000295522.3

CLDN1-201, Transcript of claudin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLDN1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-201ENST00000295522 CIRBP-AS1Q8TBR5 109 aa6.11□□□□□ -1.43
CLDN1-201ENST00000295522 KRTAP24-1Q3LI83 254 aa6.1□□□□□ -1.43
CLDN1-201ENST00000295522 SPRR1BP22528 89 aa6.1□□□□□ -1.43
CLDN1-201ENST00000295522 RTL8CO15255 209 aa6.09□□□□□ -1.43
CLDN1-201ENST00000295522 KRTAP1-5Q9BYS1 174 aa6.09□□□□□ -1.43
CLDN1-201ENST00000295522 ZNF706Q9Y5V0 76 aaPredicted RBP6.09□□□□□ -1.43
CLDN1-201ENST00000295522 IGKV2D-30A0A075B6S6 120 aa6.09□□□□□ -1.44
CLDN1-201ENST00000295522 IGKV2-30P06310 120 aa6.09□□□□□ -1.44
CLDN1-201ENST00000295522 C1orf134Q5TEV5 83 aa6.07□□□□□ -1.44
CLDN1-201ENST00000295522 PANO1I0J062 215 aa6.07□□□□□ -1.44
CLDN1-201ENST00000295522 SPATA8Q6RVD6 105 aa6.05□□□□□ -1.44
CLDN1-201ENST00000295522 ASB16-AS1Q495Z4 193 aa6.03□□□□□ -1.44
CLDN1-201ENST00000295522 C14orf177Q52M58 125 aa6.03□□□□□ -1.44
CLDN1-201ENST00000295522 CRIPTQ9P021 101 aa6.02□□□□□ -1.44
CLDN1-201ENST00000295522 DMAC1Q96GE9 116 aa6.01□□□□□ -1.45
CLDN1-201ENST00000295522 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.99□□□□□ -1.45
CLDN1-201ENST00000295522 DNAH10Q8IVF4 4471 aa5.99□□□□□ -1.45
CLDN1-201ENST00000295522 DMBT1Q9UGM3 2413 aaPredicted RBP5.98□□□□□ -1.45
CLDN1-201ENST00000295522 TGP01266 2768 aa5.98□□□□□ -1.45
CLDN1-201ENST00000295522 WWC2-AS2Q96NR7 200 aa5.97□□□□□ -1.45
CLDN1-201ENST00000295522 FAM229AH3BQW9 127 aa5.96□□□□□ -1.45
CLDN1-201ENST00000295522 PSORS1C2Q9UIG4 136 aa5.96□□□□□ -1.45
CLDN1-201ENST00000295522 ANK2Q01484 3957 aa5.96□□□□□ -1.46
CLDN1-201ENST00000295522 Q8N1X5 172 aa5.95□□□□□ -1.46
CLDN1-201ENST00000295522 ZNF861PO60384 105 aa5.94□□□□□ -1.46
CLDN1-201ENST00000295522 LYSTQ99698 3801 aa5.93□□□□□ -1.46
CLDN1-201ENST00000295522 KRTAP13-1Q8IUC0 172 aa5.93□□□□□ -1.46
CLDN1-201ENST00000295522 SSBP3-AS1Q7Z2R9 100 aa5.9□□□□□ -1.46
CLDN1-201ENST00000295522 CMYA5Q8N3K9 4069 aa5.9□□□□□ -1.47
CLDN1-201ENST00000295522 KRTAP13-3Q3SY46 172 aa5.89□□□□□ -1.47
CLDN1-201ENST00000295522 DNHD1Q96M86 4753 aa5.89□□□□□ -1.47
CLDN1-201ENST00000295522 IGLV7-43P04211 117 aa5.88□□□□□ -1.47
CLDN1-201ENST00000295522 ROMO1P60602 79 aa5.88□□□□□ -1.47
CLDN1-201ENST00000295522 SPACA4Q8TDM5 124 aa5.88□□□□□ -1.47
CLDN1-201ENST00000295522 LINC00483Q53H64 154 aa5.87□□□□□ -1.47
CLDN1-201ENST00000295522 IGLV5-52A0A0A0MRZ9 124 aa5.86□□□□□ -1.47
CLDN1-201ENST00000295522 KRTAP25-1Q3LHN0 102 aa5.86□□□□□ -1.47
CLDN1-201ENST00000295522 NBDYA0A0U1RRE5 68 aa5.84□□□□□ -1.47
CLDN1-201ENST00000295522 APLNQ9ULZ1 77 aa5.83□□□□□ -1.48
CLDN1-201ENST00000295522 MEGF8Q7Z7M0 2845 aa5.82□□□□□ -1.48
CLDN1-201ENST00000295522 SPINT4Q6UDR6 99 aa5.81□□□□□ -1.48
CLDN1-201ENST00000295522 LINC00304Q8N9R0 145 aa5.81□□□□□ -1.48
CLDN1-201ENST00000295522 FBN3Q75N90 2809 aa5.81□□□□□ -1.48
CLDN1-201ENST00000295522 K7ERS5 55 aa5.8□□□□□ -1.48
CLDN1-201ENST00000295522 A8MUU9 505 aa5.8□□□□□ -1.48
CLDN1-201ENST00000295522 A0A1B0GU33 70 aa5.78□□□□□ -1.48
CLDN1-201ENST00000295522 H0YAA0 97 aa5.78□□□□□ -1.48
CLDN1-201ENST00000295522 Q6ZSA8 131 aa5.78□□□□□ -1.48
CLDN1-201ENST00000295522 LY6G6CO95867 125 aa5.77□□□□□ -1.49
CLDN1-201ENST00000295522 TYMSOSQ8TAI1 123 aa5.77□□□□□ -1.49
CLDN1-201ENST00000295522 A0A087WTM6 91 aa5.76□□□□□ -1.49
CLDN1-201ENST00000295522 DNAH9Q9NYC9 4486 aa5.75□□□□□ -1.49
CLDN1-201ENST00000295522 FRAS1Q86XX4 4008 aa5.74□□□□□ -1.49
CLDN1-201ENST00000295522 HUWE1Q7Z6Z7 4374 aaKnown RBP5.73□□□□□ -1.49
CLDN1-201ENST00000295522 NUPR2A6NF83 97 aa5.72□□□□□ -1.49
CLDN1-201ENST00000295522 ALMS1Q8TCU4 4167 aa5.72□□□□□ -1.49
CLDN1-201ENST00000295522 DNAH3Q8TD57 4116 aa5.72□□□□□ -1.49
CLDN1-201ENST00000295522 PRKDCP78527 4128 aaKnown RBP5.71□□□□□ -1.49
CLDN1-201ENST00000295522 Q6ZRN7 208 aaPredicted RBP5.7□□□□□ -1.5
CLDN1-201ENST00000295522 DNAH1Q9P2D7 4330 aa5.7□□□□□ -1.5
CLDN1-201ENST00000295522 A0A0D9SG42 100 aa5.69□□□□□ -1.5
CLDN1-201ENST00000295522 P0C880 135 aa5.69□□□□□ -1.5
CLDN1-201ENST00000295522 H1FX-AS1Q4G0G2 97 aa5.67□□□□□ -1.5
CLDN1-201ENST00000295522 KRTAP16-1A8MUX0 517 aa5.67□□□□□ -1.5
CLDN1-201ENST00000295522 C9orf92A6NGG3 77 aa5.66□□□□□ -1.5
CLDN1-201ENST00000295522 NDUFAF8A1L188 74 aa5.65□□□□□ -1.5
CLDN1-201ENST00000295522 KRTAP13-2Q52LG2 175 aa5.64□□□□□ -1.51
CLDN1-201ENST00000295522 DNAH7Q8WXX0 4024 aa5.63□□□□□ -1.51
CLDN1-201ENST00000295522 DNAH8Q96JB1 4490 aa5.62□□□□□ -1.51
CLDN1-201ENST00000295522 C10orf95Q9H7T3 257 aa5.6□□□□□ -1.51
CLDN1-201ENST00000295522 PLECQ15149 4684 aaKnown RBP5.58□□□□□ -1.52
CLDN1-201ENST00000295522 COX6B2Q6YFQ2 88 aa5.57□□□□□ -1.52
CLDN1-201ENST00000295522 KRTAP10-2P60368 255 aa5.56□□□□□ -1.52
CLDN1-201ENST00000295522 DNAH17Q9UFH2 4485 aa5.55□□□□□ -1.52
CLDN1-201ENST00000295522 STARD9Q9P2P6 4700 aa5.52□□□□□ -1.53
CLDN1-201ENST00000295522 RPL37P61927 97 aaKnown RBP5.51□□□□□ -1.53
CLDN1-201ENST00000295522 C20orf166-AS1Q96NR2 134 aa5.5□□□□□ -1.53
CLDN1-201ENST00000295522 KRTAP21-3Q3LHN1 58 aa5.5□□□□□ -1.53
CLDN1-201ENST00000295522 TPRXLQ17RH7 258 aa5.49□□□□□ -1.53
CLDN1-201ENST00000295522 SMR3BP02814 79 aaPredicted RBP5.47□□□□□ -1.53
CLDN1-201ENST00000295522 KRTAP3-1Q9BYR8 98 aa5.47□□□□□ -1.53
CLDN1-201ENST00000295522 KRTAP10-1P60331 282 aa5.46□□□□□ -1.53
CLDN1-201ENST00000295522 KMT2AQ03164 3969 aa5.46□□□□□ -1.54
CLDN1-201ENST00000295522 KRTAP1-4P0C5Y4 121 aa5.43□□□□□ -1.54
CLDN1-201ENST00000295522 HECTD4Q9Y4D8 3996 aa5.42□□□□□ -1.54
CLDN1-201ENST00000295522 A0A0A0MQY5 61 aa5.41□□□□□ -1.54
CLDN1-201ENST00000295522 KRTAP13-4Q3LI77 160 aa5.38□□□□□ -1.55
CLDN1-201ENST00000295522 DNAH11Q96DT5 4516 aa5.38□□□□□ -1.55
CLDN1-201ENST00000295522 DNAH6Q9C0G6 4158 aa5.36□□□□□ -1.55
CLDN1-201ENST00000295522 HYDINQ4G0P3 5121 aa5.36□□□□□ -1.55
CLDN1-201ENST00000295522 VPS13DQ5THJ4 4388 aa5.34□□□□□ -1.56
CLDN1-201ENST00000295522 DNAH2Q9P225 4427 aa5.34□□□□□ -1.56
CLDN1-201ENST00000295522 KRTAP15-1Q3LI76 137 aa5.33□□□□□ -1.56
CLDN1-201ENST00000295522 DYNC2H1Q8NCM8 4307 aaKnown RBP5.33□□□□□ -1.56
CLDN1-201ENST00000295522 LRP1BQ9NZR2 4599 aa5.33□□□□□ -1.56
CLDN1-201ENST00000295522 S4R3F8 94 aa5.32□□□□□ -1.56
CLDN1-201ENST00000295522 KMT2CQ8NEZ4 4911 aaKnown RBP5.29□□□□□ -1.56
CLDN1-201ENST00000295522 KRTAP10-6P60371 365 aaPredicted RBP5.28□□□□□ -1.56
CLDN1-201ENST00000295522 KRTAP12-2P59991 146 aa5.27□□□□□ -1.57
CLDN1-201ENST00000295522 LUZP6Q538Z0 58 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms