RNA–Protein interactions for RNA: ENST00000293748.9

SYNGAP1-201, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 4,556 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-201ENST00000293748 CYSTM1Q9H1C7 97 aa7.42□□□□□ -1.22
SYNGAP1-201ENST00000293748 TNP2Q05952 138 aa7.41□□□□□ -1.22
SYNGAP1-201ENST00000293748 Q8N1X5 172 aa7.4□□□□□ -1.23
SYNGAP1-201ENST00000293748 FAM229BQ4G0N7 80 aa7.39□□□□□ -1.23
SYNGAP1-201ENST00000293748 LINC01554Q52M75 96 aa7.39□□□□□ -1.23
SYNGAP1-201ENST00000293748 C9orf92A6NGG3 77 aa7.38□□□□□ -1.23
SYNGAP1-201ENST00000293748 KRTAP1-5Q9BYS1 174 aa7.37□□□□□ -1.23
SYNGAP1-201ENST00000293748 HRES1P13985 223 aa7.36□□□□□ -1.23
SYNGAP1-201ENST00000293748 MMP24-AS1A0A0U1RRL7 71 aa7.35□□□□□ -1.23
SYNGAP1-201ENST00000293748 A0A0D9SG42 100 aa7.34□□□□□ -1.23
SYNGAP1-201ENST00000293748 A0A1B0GU33 70 aa7.34□□□□□ -1.24
SYNGAP1-201ENST00000293748 Q5VV11 94 aa7.34□□□□□ -1.24
SYNGAP1-201ENST00000293748 DNAH9Q9NYC9 4486 aa7.33□□□□□ -1.24
SYNGAP1-201ENST00000293748 SPRR1AP35321 89 aa7.33□□□□□ -1.24
SYNGAP1-201ENST00000293748 LUZP6Q538Z0 58 aa7.33□□□□□ -1.24
SYNGAP1-201ENST00000293748 CMYA5Q8N3K9 4069 aa7.32□□□□□ -1.24
SYNGAP1-201ENST00000293748 DNAH3Q8TD57 4116 aa7.31□□□□□ -1.24
SYNGAP1-201ENST00000293748 HUWE1Q7Z6Z7 4374 aaKnown RBP7.31□□□□□ -1.24
SYNGAP1-201ENST00000293748 Q8NDZ9 215 aa7.3□□□□□ -1.24
SYNGAP1-201ENST00000293748 TENM2Q9NT68 2774 aa7.29□□□□□ -1.24
SYNGAP1-201ENST00000293748 OXTP01178 125 aa7.29□□□□□ -1.24
SYNGAP1-201ENST00000293748 COX6B2Q6YFQ2 88 aa7.28□□□□□ -1.24
SYNGAP1-201ENST00000293748 Q6ZRN7 208 aaPredicted RBP7.28□□□□□ -1.24
SYNGAP1-201ENST00000293748 PRKDCP78527 4128 aaKnown RBP7.27□□□□□ -1.25
SYNGAP1-201ENST00000293748 SPRR1BP22528 89 aa7.27□□□□□ -1.25
SYNGAP1-201ENST00000293748 PRAC1Q96KF2 57 aa7.26□□□□□ -1.25
SYNGAP1-201ENST00000293748 LINC00472Q9H8W2 130 aa7.26□□□□□ -1.25
SYNGAP1-201ENST00000293748 H3BS24 57 aa7.23□□□□□ -1.25
SYNGAP1-201ENST00000293748 SPINK7P58062 85 aa7.22□□□□□ -1.25
SYNGAP1-201ENST00000293748 KRTAP10-2P60368 255 aa7.22□□□□□ -1.25
SYNGAP1-201ENST00000293748 FLG2Q5D862 2391 aaPredicted RBP7.21□□□□□ -1.25
SYNGAP1-201ENST00000293748 SMR3BP02814 79 aaPredicted RBP7.21□□□□□ -1.26
SYNGAP1-201ENST00000293748 DMAC1Q96GE9 116 aa7.21□□□□□ -1.26
SYNGAP1-201ENST00000293748 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.2□□□□□ -1.26
SYNGAP1-201ENST00000293748 J3QL48 77 aa7.19□□□□□ -1.26
SYNGAP1-201ENST00000293748 CSAG1Q6PB30 78 aa7.18□□□□□ -1.26
SYNGAP1-201ENST00000293748 ZCCHC13Q8WW36 166 aaKnown RBP7.18□□□□□ -1.26
SYNGAP1-201ENST00000293748 Q5W150 140 aa7.18□□□□□ -1.26
SYNGAP1-201ENST00000293748 KRTAP26-1Q6PEX3 210 aa7.18□□□□□ -1.26
SYNGAP1-201ENST00000293748 A0A1B0GVY2 172 aa7.17□□□□□ -1.26
SYNGAP1-201ENST00000293748 KRTAP10-1P60331 282 aa7.15□□□□□ -1.26
SYNGAP1-201ENST00000293748 ALMS1Q8TCU4 4167 aa7.15□□□□□ -1.27
SYNGAP1-201ENST00000293748 PLAC8Q9NZF1 115 aa7.14□□□□□ -1.27
SYNGAP1-201ENST00000293748 ASB16-AS1Q495Z4 193 aa7.13□□□□□ -1.27
SYNGAP1-201ENST00000293748 CAMK2N1Q7Z7J9 78 aa7.11□□□□□ -1.27
SYNGAP1-201ENST00000293748 COL7A1Q02388 2944 aa7.11□□□□□ -1.27
SYNGAP1-201ENST00000293748 LINC00483Q53H64 154 aa7.09□□□□□ -1.27
SYNGAP1-201ENST00000293748 Q6ZSA8 131 aa7.08□□□□□ -1.28
SYNGAP1-201ENST00000293748 A0A0A0MQY5 61 aa7.07□□□□□ -1.28
SYNGAP1-201ENST00000293748 KRTAP29-1A8MX34 341 aaPredicted RBP7.06□□□□□ -1.28
SYNGAP1-201ENST00000293748 Q5VSD8 79 aa7.05□□□□□ -1.28
SYNGAP1-201ENST00000293748 RPL37P61927 97 aaKnown RBP7.04□□□□□ -1.28
SYNGAP1-201ENST00000293748 DMBT1Q9UGM3 2413 aaPredicted RBP7.03□□□□□ -1.28
SYNGAP1-201ENST00000293748 KRTAP4-16G5E9R7 235 aaPredicted RBP7.03□□□□□ -1.28
SYNGAP1-201ENST00000293748 ROMO1P60602 79 aa7.01□□□□□ -1.29
SYNGAP1-201ENST00000293748 S4R3F8 94 aa7.01□□□□□ -1.29
SYNGAP1-201ENST00000293748 DYNC2H1Q8NCM8 4307 aaKnown RBP6.97□□□□□ -1.29
SYNGAP1-201ENST00000293748 H1FX-AS1Q4G0G2 97 aa6.97□□□□□ -1.29
SYNGAP1-201ENST00000293748 STARD9Q9P2P6 4700 aa6.97□□□□□ -1.29
SYNGAP1-201ENST00000293748 PLECQ15149 4684 aaKnown RBP6.97□□□□□ -1.29
SYNGAP1-201ENST00000293748 SPATA8Q6RVD6 105 aa6.96□□□□□ -1.29
SYNGAP1-201ENST00000293748 A8MU10 97 aa6.95□□□□□ -1.3
SYNGAP1-201ENST00000293748 R4GN34 69 aa6.93□□□□□ -1.3
SYNGAP1-201ENST00000293748 DNAH7Q8WXX0 4024 aa6.93□□□□□ -1.3
SYNGAP1-201ENST00000293748 A6NN06 94 aa6.93□□□□□ -1.3
SYNGAP1-201ENST00000293748 PANO1I0J062 215 aa6.91□□□□□ -1.3
SYNGAP1-201ENST00000293748 VPS13DQ5THJ4 4388 aa6.89□□□□□ -1.31
SYNGAP1-201ENST00000293748 DNAH1Q9P2D7 4330 aa6.87□□□□□ -1.31
SYNGAP1-201ENST00000293748 RYR2Q92736 4967 aa6.86□□□□□ -1.31
SYNGAP1-201ENST00000293748 DNAH6Q9C0G6 4158 aa6.82□□□□□ -1.32
SYNGAP1-201ENST00000293748 SACSQ9NZJ4 4579 aa6.82□□□□□ -1.32
SYNGAP1-201ENST00000293748 KRTAP25-1Q3LHN0 102 aa6.8□□□□□ -1.32
SYNGAP1-201ENST00000293748 A0A087X002 238 aa6.79□□□□□ -1.32
SYNGAP1-201ENST00000293748 NOTCH2NLQ7Z3S9 236 aa6.79□□□□□ -1.32
SYNGAP1-201ENST00000293748 M0QZ58 72 aa6.79□□□□□ -1.32
SYNGAP1-201ENST00000293748 SEC61BP60468 96 aaKnown RBP6.78□□□□□ -1.32
SYNGAP1-201ENST00000293748 KRTAP16-1A8MUX0 517 aa6.77□□□□□ -1.32
SYNGAP1-201ENST00000293748 CSMD3Q7Z407 3707 aa6.76□□□□□ -1.33
SYNGAP1-201ENST00000293748 M0R2T5 61 aa6.76□□□□□ -1.33
SYNGAP1-201ENST00000293748 KMT2CQ8NEZ4 4911 aaKnown RBP6.75□□□□□ -1.33
SYNGAP1-201ENST00000293748 DNAH10Q8IVF4 4471 aa6.74□□□□□ -1.33
SYNGAP1-201ENST00000293748 DNAH11Q96DT5 4516 aa6.72□□□□□ -1.33
SYNGAP1-201ENST00000293748 ADM2Q7Z4H4 148 aa6.71□□□□□ -1.33
SYNGAP1-201ENST00000293748 KRTAP7-1Q8IUC3 87 aa6.71□□□□□ -1.34
SYNGAP1-201ENST00000293748 BIRC6Q9NR09 4857 aa6.69□□□□□ -1.34
SYNGAP1-201ENST00000293748 DNAH17Q9UFH2 4485 aa6.69□□□□□ -1.34
SYNGAP1-201ENST00000293748 RPS29P62273 56 aaKnown RBP6.68□□□□□ -1.34
SYNGAP1-201ENST00000293748 KRTAP11-1Q8IUC1 163 aa6.68□□□□□ -1.34
SYNGAP1-201ENST00000293748 KMT2AQ03164 3969 aa6.66□□□□□ -1.34
SYNGAP1-201ENST00000293748 HYDINQ4G0P3 5121 aa6.65□□□□□ -1.34
SYNGAP1-201ENST00000293748 RYR3Q15413 4870 aa6.65□□□□□ -1.35
SYNGAP1-201ENST00000293748 KRTAP13-1Q8IUC0 172 aa6.64□□□□□ -1.35
SYNGAP1-201ENST00000293748 KRTAP4-5Q9BYR2 181 aa6.62□□□□□ -1.35
SYNGAP1-201ENST00000293748 NDUFAF8A1L188 74 aa6.6□□□□□ -1.35
SYNGAP1-201ENST00000293748 DYNC1H1Q14204 4646 aaKnown RBP6.59□□□□□ -1.35
SYNGAP1-201ENST00000293748 LYSTQ99698 3801 aa6.59□□□□□ -1.35
SYNGAP1-201ENST00000293748 DNAH2Q9P225 4427 aa6.59□□□□□ -1.35
SYNGAP1-201ENST00000293748 KRTAP10-4P60372 401 aaPredicted RBP6.57□□□□□ -1.36
SYNGAP1-201ENST00000293748 PLAC4Q8WY50 150 aa6.56□□□□□ -1.36
SYNGAP1-201ENST00000293748 DNAH5Q8TE73 4624 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms