RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 PANO1I0J062 215 aa10.01□□□□□ -0.81
CTCF-201ENST00000264010 CSAG1Q6PB30 78 aa10.01□□□□□ -0.81
CTCF-201ENST00000264010 KRTAP11-1Q8IUC1 163 aa10.01□□□□□ -0.81
CTCF-201ENST00000264010 ADM2Q7Z4H4 148 aa10□□□□□ -0.81
CTCF-201ENST00000264010 WWC2-AS2Q96NR7 200 aa10□□□□□ -0.81
CTCF-201ENST00000264010 LYSTQ99698 3801 aa9.99□□□□□ -0.81
CTCF-201ENST00000264010 TP53AIP1Q9HCN2 124 aa9.98□□□□□ -0.81
CTCF-201ENST00000264010 PLAC8Q9NZF1 115 aa9.96□□□□□ -0.81
CTCF-201ENST00000264010 CRIPTQ9P021 101 aa9.96□□□□□ -0.81
CTCF-201ENST00000264010 SPANXA2-OT1Q8N9U9 137 aa9.95□□□□□ -0.82
CTCF-201ENST00000264010 Q6ZR54 194 aa9.95□□□□□ -0.82
CTCF-201ENST00000264010 ANAPC11Q9NYG5 84 aa9.93□□□□□ -0.82
CTCF-201ENST00000264010 IGLV7-43P04211 117 aa9.92□□□□□ -0.82
CTCF-201ENST00000264010 LINC00472Q9H8W2 130 aa9.9□□□□□ -0.82
CTCF-201ENST00000264010 C8orf17Q9NRJ1 99 aa9.87□□□□□ -0.83
CTCF-201ENST00000264010 DNAH10Q8IVF4 4471 aa9.86□□□□□ -0.83
CTCF-201ENST00000264010 KRTAP13-1Q8IUC0 172 aa9.86□□□□□ -0.83
CTCF-201ENST00000264010 A0A1B0GVX0 72 aa9.85□□□□□ -0.83
CTCF-201ENST00000264010 LINC00483Q53H64 154 aa9.84□□□□□ -0.83
CTCF-201ENST00000264010 MRPL34Q9BQ48 92 aaKnown RBP9.84□□□□□ -0.83
CTCF-201ENST00000264010 LINC01558Q9Y6Z2 57 aa9.84□□□□□ -0.83
CTCF-201ENST00000264010 IGLV7-46A0A075B6I9 117 aa9.83□□□□□ -0.84
CTCF-201ENST00000264010 A6NN06 94 aa9.83□□□□□ -0.84
CTCF-201ENST00000264010 TENM2Q9NT68 2774 aa9.81□□□□□ -0.84
CTCF-201ENST00000264010 HRES1P13985 223 aa9.8□□□□□ -0.84
CTCF-201ENST00000264010 MMP24-AS1A0A0U1RRL7 71 aa9.79□□□□□ -0.84
CTCF-201ENST00000264010 HUWE1Q7Z6Z7 4374 aaKnown RBP9.77□□□□□ -0.85
CTCF-201ENST00000264010 KRTAP29-1A8MX34 341 aaPredicted RBP9.76□□□□□ -0.85
CTCF-201ENST00000264010 LCE6AA0A183 80 aa9.74□□□□□ -0.85
CTCF-201ENST00000264010 ZCCHC13Q8WW36 166 aaKnown RBP9.73□□□□□ -0.85
CTCF-201ENST00000264010 KRTAP10-2P60368 255 aa9.72□□□□□ -0.85
CTCF-201ENST00000264010 TYMSOSQ8TAI1 123 aa9.67□□□□□ -0.86
CTCF-201ENST00000264010 PLA2G1BP04054 148 aaKnown RBP9.66□□□□□ -0.86
CTCF-201ENST00000264010 Q8N1X5 172 aa9.65□□□□□ -0.86
CTCF-201ENST00000264010 KRTAP10-1P60331 282 aa9.65□□□□□ -0.86
CTCF-201ENST00000264010 Q96NJ1 140 aa9.61□□□□□ -0.87
CTCF-201ENST00000264010 A0A0D9SG42 100 aa9.6□□□□□ -0.87
CTCF-201ENST00000264010 FAM229AH3BQW9 127 aa9.59□□□□□ -0.87
CTCF-201ENST00000264010 DNAH9Q9NYC9 4486 aa9.58□□□□□ -0.88
CTCF-201ENST00000264010 DNAH1Q9P2D7 4330 aa9.58□□□□□ -0.88
CTCF-201ENST00000264010 TGP01266 2768 aa9.57□□□□□ -0.88
CTCF-201ENST00000264010 DNAH3Q8TD57 4116 aa9.56□□□□□ -0.88
CTCF-201ENST00000264010 DNAH7Q8WXX0 4024 aa9.54□□□□□ -0.88
CTCF-201ENST00000264010 CMYA5Q8N3K9 4069 aa9.53□□□□□ -0.88
CTCF-201ENST00000264010 KRTAP21-3Q3LHN1 58 aa9.51□□□□□ -0.89
CTCF-201ENST00000264010 A0A087X002 238 aa9.5□□□□□ -0.89
CTCF-201ENST00000264010 LINC00304Q8N9R0 145 aa9.5□□□□□ -0.89
CTCF-201ENST00000264010 SMR3BP02814 79 aaPredicted RBP9.49□□□□□ -0.89
CTCF-201ENST00000264010 NOTCH2NLQ7Z3S9 236 aa9.49□□□□□ -0.89
CTCF-201ENST00000264010 FRAS1Q86XX4 4008 aa9.49□□□□□ -0.89
CTCF-201ENST00000264010 ASB16-AS1Q495Z4 193 aa9.48□□□□□ -0.89
CTCF-201ENST00000264010 Q6ZSA8 131 aa9.46□□□□□ -0.9
CTCF-201ENST00000264010 KRTAP13-2Q52LG2 175 aa9.43□□□□□ -0.9
CTCF-201ENST00000264010 A0A1B0GU33 70 aa9.38□□□□□ -0.91
CTCF-201ENST00000264010 PLECQ15149 4684 aaKnown RBP9.37□□□□□ -0.91
CTCF-201ENST00000264010 NDUFAF8A1L188 74 aa9.36□□□□□ -0.91
CTCF-201ENST00000264010 Q5W150 140 aa9.36□□□□□ -0.91
CTCF-201ENST00000264010 MEGF8Q7Z7M0 2845 aa9.33□□□□□ -0.92
CTCF-201ENST00000264010 ROMO1P60602 79 aa9.32□□□□□ -0.92
CTCF-201ENST00000264010 SPATA8Q6RVD6 105 aa9.31□□□□□ -0.92
CTCF-201ENST00000264010 FBN3Q75N90 2809 aa9.3□□□□□ -0.92
CTCF-201ENST00000264010 KRTAP1-4P0C5Y4 121 aa9.28□□□□□ -0.92
CTCF-201ENST00000264010 KRTAP16-1A8MUX0 517 aa9.26□□□□□ -0.93
CTCF-201ENST00000264010 C9orf92A6NGG3 77 aa9.25□□□□□ -0.93
CTCF-201ENST00000264010 A0A0A0MQY5 61 aa9.25□□□□□ -0.93
CTCF-201ENST00000264010 VPS13DQ5THJ4 4388 aa9.24□□□□□ -0.93
CTCF-201ENST00000264010 KRTAP25-1Q3LHN0 102 aa9.24□□□□□ -0.93
CTCF-201ENST00000264010 RPS29P62273 56 aaKnown RBP9.19□□□□□ -0.94
CTCF-201ENST00000264010 DMAC1Q96GE9 116 aa9.19□□□□□ -0.94
CTCF-201ENST00000264010 STARD9Q9P2P6 4700 aa9.18□□□□□ -0.94
CTCF-201ENST00000264010 DYNC2H1Q8NCM8 4307 aaKnown RBP9.17□□□□□ -0.94
CTCF-201ENST00000264010 DNAH8Q96JB1 4490 aa9.16□□□□□ -0.94
CTCF-201ENST00000264010 A8MUU9 505 aa9.12□□□□□ -0.95
CTCF-201ENST00000264010 PRKDCP78527 4128 aaKnown RBP9.11□□□□□ -0.95
CTCF-201ENST00000264010 LUZP6Q538Z0 58 aa9.1□□□□□ -0.95
CTCF-201ENST00000264010 DNAH17Q9UFH2 4485 aa9.09□□□□□ -0.95
CTCF-201ENST00000264010 KRTAP13-3Q3SY46 172 aa9.08□□□□□ -0.96
CTCF-201ENST00000264010 KMT2AQ03164 3969 aa9.07□□□□□ -0.96
CTCF-201ENST00000264010 HECTD4Q9Y4D8 3996 aa9.04□□□□□ -0.96
CTCF-201ENST00000264010 DNHD1Q96M86 4753 aa8.99□□□□□ -0.97
CTCF-201ENST00000264010 A0A1B0GVY2 172 aa8.99□□□□□ -0.97
CTCF-201ENST00000264010 Q5VSD8 79 aa8.98□□□□□ -0.97
CTCF-201ENST00000264010 DNAH6Q9C0G6 4158 aa8.98□□□□□ -0.97
CTCF-201ENST00000264010 DNAH2Q9P225 4427 aa8.95□□□□□ -0.98
CTCF-201ENST00000264010 H1FX-AS1Q4G0G2 97 aa8.95□□□□□ -0.98
CTCF-201ENST00000264010 RPL37P61927 97 aaKnown RBP8.95□□□□□ -0.98
CTCF-201ENST00000264010 ALMS1Q8TCU4 4167 aa8.94□□□□□ -0.98
CTCF-201ENST00000264010 DNAH11Q96DT5 4516 aa8.93□□□□□ -0.98
CTCF-201ENST00000264010 C10orf95Q9H7T3 257 aa8.92□□□□□ -0.98
CTCF-201ENST00000264010 C20orf166-AS1Q96NR2 134 aa8.91□□□□□ -0.98
CTCF-201ENST00000264010 COX6B2Q6YFQ2 88 aa8.77□□□□□ -1.01
CTCF-201ENST00000264010 H0YAA0 97 aa8.75□□□□□ -1.01
CTCF-201ENST00000264010 LRP1BQ9NZR2 4599 aa8.74□□□□□ -1.01
CTCF-201ENST00000264010 FAT2Q9NYQ8 4349 aa8.74□□□□□ -1.01
CTCF-201ENST00000264010 DNAH5Q8TE73 4624 aa8.73□□□□□ -1.01
CTCF-201ENST00000264010 KRTAP10-4P60372 401 aaPredicted RBP8.7□□□□□ -1.02
CTCF-201ENST00000264010 KRTAP10-8P60410 259 aa8.67□□□□□ -1.02
CTCF-201ENST00000264010 P0C880 135 aa8.61□□□□□ -1.03
CTCF-201ENST00000264010 J3QL48 77 aa8.59□□□□□ -1.03
CTCF-201ENST00000264010 S4R3F8 94 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms