RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 FRAS1Q86XX4 4008 aa8.6□□□□□ -1.03
SDC1-201ENST00000254351 Q6ZR54 194 aa8.59□□□□□ -1.03
SDC1-201ENST00000254351 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.59□□□□□ -1.03
SDC1-201ENST00000254351 PLAC8Q9NZF1 115 aa8.58□□□□□ -1.04
SDC1-201ENST00000254351 HUWE1Q7Z6Z7 4374 aaKnown RBP8.56□□□□□ -1.04
SDC1-201ENST00000254351 CIRBP-AS1Q8TBR5 109 aa8.55□□□□□ -1.04
SDC1-201ENST00000254351 C8orf87E5RJ46 101 aa8.54□□□□□ -1.04
SDC1-201ENST00000254351 TGP01266 2768 aa8.53□□□□□ -1.04
SDC1-201ENST00000254351 ASB16-AS1Q495Z4 193 aa8.51□□□□□ -1.05
SDC1-201ENST00000254351 A0A1B0GU69 56 aa8.51□□□□□ -1.05
SDC1-201ENST00000254351 KRTAP13-1Q8IUC0 172 aa8.49□□□□□ -1.05
SDC1-201ENST00000254351 ACYP2P14621 99 aa8.48□□□□□ -1.05
SDC1-201ENST00000254351 PSORS1C2Q9UIG4 136 aa8.48□□□□□ -1.05
SDC1-201ENST00000254351 C14orf177Q52M58 125 aa8.47□□□□□ -1.05
SDC1-201ENST00000254351 WWC2-AS2Q96NR7 200 aa8.47□□□□□ -1.05
SDC1-201ENST00000254351 FBN3Q75N90 2809 aa8.47□□□□□ -1.05
SDC1-201ENST00000254351 MEGF8Q7Z7M0 2845 aa8.46□□□□□ -1.05
SDC1-201ENST00000254351 SPINK1P00995 79 aa8.44□□□□□ -1.06
SDC1-201ENST00000254351 PRKDCP78527 4128 aaKnown RBP8.44□□□□□ -1.06
SDC1-201ENST00000254351 C4orf48Q5BLP8 95 aa8.41□□□□□ -1.06
SDC1-201ENST00000254351 RTL8CO15255 209 aa8.41□□□□□ -1.06
SDC1-201ENST00000254351 IGKV2D-30A0A075B6S6 120 aa8.4□□□□□ -1.06
SDC1-201ENST00000254351 IGKV2-30P06310 120 aa8.4□□□□□ -1.06
SDC1-201ENST00000254351 FLG2Q5D862 2391 aaPredicted RBP8.4□□□□□ -1.07
SDC1-201ENST00000254351 MIR22HGQ0VDD5 57 aa8.39□□□□□ -1.07
SDC1-201ENST00000254351 LINC01554Q52M75 96 aa8.39□□□□□ -1.07
SDC1-201ENST00000254351 APLNQ9ULZ1 77 aa8.39□□□□□ -1.07
SDC1-201ENST00000254351 SPACA4Q8TDM5 124 aa8.38□□□□□ -1.07
SDC1-201ENST00000254351 NBDYA0A0U1RRE5 68 aa8.38□□□□□ -1.07
SDC1-201ENST00000254351 DNAH8Q96JB1 4490 aa8.37□□□□□ -1.07
SDC1-201ENST00000254351 CSAG1Q6PB30 78 aa8.37□□□□□ -1.07
SDC1-201ENST00000254351 PLECQ15149 4684 aaKnown RBP8.37□□□□□ -1.07
SDC1-201ENST00000254351 ZNF706Q9Y5V0 76 aaPredicted RBP8.35□□□□□ -1.07
SDC1-201ENST00000254351 LINC00483Q53H64 154 aa8.35□□□□□ -1.07
SDC1-201ENST00000254351 IGLV5-52A0A0A0MRZ9 124 aa8.34□□□□□ -1.07
SDC1-201ENST00000254351 ZNF861PO60384 105 aa8.34□□□□□ -1.07
SDC1-201ENST00000254351 H3BS24 57 aa8.34□□□□□ -1.08
SDC1-201ENST00000254351 KRTAP13-3Q3SY46 172 aa8.34□□□□□ -1.08
SDC1-201ENST00000254351 NUPR2A6NF83 97 aa8.33□□□□□ -1.08
SDC1-201ENST00000254351 DMAC1Q96GE9 116 aa8.32□□□□□ -1.08
SDC1-201ENST00000254351 UQCR11O14957 56 aa8.32□□□□□ -1.08
SDC1-201ENST00000254351 PLA2G1BP04054 148 aaKnown RBP8.32□□□□□ -1.08
SDC1-201ENST00000254351 Q6ZRN7 208 aaPredicted RBP8.29□□□□□ -1.08
SDC1-201ENST00000254351 DYNC2H1Q8NCM8 4307 aaKnown RBP8.28□□□□□ -1.08
SDC1-201ENST00000254351 SPATA8Q6RVD6 105 aa8.28□□□□□ -1.08
SDC1-201ENST00000254351 A0A087WTM6 91 aa8.27□□□□□ -1.09
SDC1-201ENST00000254351 DNAH17Q9UFH2 4485 aa8.27□□□□□ -1.09
SDC1-201ENST00000254351 Q8N1X5 172 aa8.26□□□□□ -1.09
SDC1-201ENST00000254351 KMT2AQ03164 3969 aa8.26□□□□□ -1.09
SDC1-201ENST00000254351 FAM229AH3BQW9 127 aa8.23□□□□□ -1.09
SDC1-201ENST00000254351 ALMS1Q8TCU4 4167 aa8.23□□□□□ -1.09
SDC1-201ENST00000254351 STARD9Q9P2P6 4700 aa8.22□□□□□ -1.09
SDC1-201ENST00000254351 CRIPTQ9P021 101 aa8.2□□□□□ -1.1
SDC1-201ENST00000254351 IGLV7-43P04211 117 aa8.2□□□□□ -1.1
SDC1-201ENST00000254351 HECTD4Q9Y4D8 3996 aa8.19□□□□□ -1.1
SDC1-201ENST00000254351 DMBT1Q9UGM3 2413 aaPredicted RBP8.17□□□□□ -1.1
SDC1-201ENST00000254351 DNAH6Q9C0G6 4158 aa8.15□□□□□ -1.11
SDC1-201ENST00000254351 DNAH2Q9P225 4427 aa8.12□□□□□ -1.11
SDC1-201ENST00000254351 VPS13DQ5THJ4 4388 aa8.11□□□□□ -1.11
SDC1-201ENST00000254351 KRTAP13-2Q52LG2 175 aa8.09□□□□□ -1.11
SDC1-201ENST00000254351 C1orf134Q5TEV5 83 aa8.09□□□□□ -1.11
SDC1-201ENST00000254351 SSBP3-AS1Q7Z2R9 100 aa8.07□□□□□ -1.12
SDC1-201ENST00000254351 LY6G6CO95867 125 aa8.05□□□□□ -1.12
SDC1-201ENST00000254351 KRTAP16-1A8MUX0 517 aa8.05□□□□□ -1.12
SDC1-201ENST00000254351 TYMSOSQ8TAI1 123 aa8.05□□□□□ -1.12
SDC1-201ENST00000254351 DNAH11Q96DT5 4516 aa8.04□□□□□ -1.12
SDC1-201ENST00000254351 H0YAA0 97 aa8.01□□□□□ -1.13
SDC1-201ENST00000254351 KRTAP10-2P60368 255 aa8.01□□□□□ -1.13
SDC1-201ENST00000254351 Q6ZSA8 131 aa8.01□□□□□ -1.13
SDC1-201ENST00000254351 LRP1BQ9NZR2 4599 aa7.99□□□□□ -1.13
SDC1-201ENST00000254351 LINC00304Q8N9R0 145 aa7.97□□□□□ -1.13
SDC1-201ENST00000254351 C9orf92A6NGG3 77 aa7.96□□□□□ -1.13
SDC1-201ENST00000254351 A8MUU9 505 aa7.92□□□□□ -1.14
SDC1-201ENST00000254351 A0A1B0GU33 70 aa7.91□□□□□ -1.14
SDC1-201ENST00000254351 KRTAP25-1Q3LHN0 102 aa7.91□□□□□ -1.14
SDC1-201ENST00000254351 HYDINQ4G0P3 5121 aa7.88□□□□□ -1.15
SDC1-201ENST00000254351 ROMO1P60602 79 aa7.87□□□□□ -1.15
SDC1-201ENST00000254351 KRTAP10-1P60331 282 aa7.86□□□□□ -1.15
SDC1-201ENST00000254351 SACSQ9NZJ4 4579 aa7.85□□□□□ -1.15
SDC1-201ENST00000254351 VPS13BQ7Z7G8 4022 aa7.85□□□□□ -1.15
SDC1-201ENST00000254351 DNAH5Q8TE73 4624 aa7.85□□□□□ -1.15
SDC1-201ENST00000254351 FAT2Q9NYQ8 4349 aa7.84□□□□□ -1.15
SDC1-201ENST00000254351 KRTAP1-4P0C5Y4 121 aa7.84□□□□□ -1.15
SDC1-201ENST00000254351 A0A0D9SG42 100 aa7.8□□□□□ -1.16
SDC1-201ENST00000254351 H1FX-AS1Q4G0G2 97 aa7.8□□□□□ -1.16
SDC1-201ENST00000254351 KRTAP3-1Q9BYR8 98 aa7.78□□□□□ -1.16
SDC1-201ENST00000254351 SMR3BP02814 79 aaPredicted RBP7.75□□□□□ -1.17
SDC1-201ENST00000254351 KMT2CQ8NEZ4 4911 aaKnown RBP7.74□□□□□ -1.17
SDC1-201ENST00000254351 RYR2Q92736 4967 aa7.73□□□□□ -1.17
SDC1-201ENST00000254351 K7ERS5 55 aa7.73□□□□□ -1.17
SDC1-201ENST00000254351 P0C880 135 aa7.72□□□□□ -1.17
SDC1-201ENST00000254351 COX6B2Q6YFQ2 88 aa7.71□□□□□ -1.18
SDC1-201ENST00000254351 SPINT4Q6UDR6 99 aa7.69□□□□□ -1.18
SDC1-201ENST00000254351 PKD1P98161 4303 aa7.68□□□□□ -1.18
SDC1-201ENST00000254351 C10orf95Q9H7T3 257 aa7.68□□□□□ -1.18
SDC1-201ENST00000254351 A0A1B0GVY2 172 aa7.64□□□□□ -1.19
SDC1-201ENST00000254351 PKHD1P08F94 4074 aa7.64□□□□□ -1.19
SDC1-201ENST00000254351 FAT1Q14517 4588 aa7.59□□□□□ -1.19
SDC1-201ENST00000254351 RYR3Q15413 4870 aa7.57□□□□□ -1.2
SDC1-201ENST00000254351 KRTAP13-4Q3LI77 160 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms