RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 HIST1H2BLQ99880 126 aa8.81□□□□□ -1
CLN3-264ENST00000637985 NHP2Q9NX24 153 aaKnown RBP8.81□□□□□ -1
CLN3-264ENST00000637985 SMIM29Q86T20 159 aa8.8□□□□□ -1
CLN3-264ENST00000637985 HSBP1L1C9JCN9 74 aa8.79□□□□□ -1
CLN3-264ENST00000637985 SMIM11BQ8TCY0 68 aa8.79□□□□□ -1
CLN3-264ENST00000637985 H7C2G1 150 aa8.78□□□□□ -1
CLN3-264ENST00000637985 Q5XG85 94 aa8.77□□□□□ -1.01
CLN3-264ENST00000637985 COX6B2Q6YFQ2 88 aa8.77□□□□□ -1.01
CLN3-264ENST00000637985 S100A6P06703 90 aa8.75□□□□□ -1.01
CLN3-264ENST00000637985 VAMP3Q15836 100 aa8.75□□□□□ -1.01
CLN3-264ENST00000637985 LINC00575Q6W349 94 aa8.71□□□□□ -1.02
CLN3-264ENST00000637985 C9orf92A6NGG3 77 aa8.69□□□□□ -1.02
CLN3-264ENST00000637985 CFC1P0CG37 223 aa8.69□□□□□ -1.02
CLN3-264ENST00000637985 C1orf195Q5TG92 126 aa8.69□□□□□ -1.02
CLN3-264ENST00000637985 A0A0G2JQZ4 141 aa8.68□□□□□ -1.02
CLN3-264ENST00000637985 hADV29S1A0JD25 119 aa8.68□□□□□ -1.02
CLN3-264ENST00000637985 F8WEM9 126 aa8.68□□□□□ -1.02
CLN3-264ENST00000637985 SCGB1D1O95968 90 aa8.68□□□□□ -1.02
CLN3-264ENST00000637985 KRTAP19-1Q8IUB9 90 aa8.68□□□□□ -1.02
CLN3-264ENST00000637985 TCL1BO95988 128 aa8.66□□□□□ -1.02
CLN3-264ENST00000637985 Q6ZQY7 126 aa8.66□□□□□ -1.02
CLN3-264ENST00000637985 HIST1H4GQ99525 98 aa8.66□□□□□ -1.02
CLN3-264ENST00000637985 COX8AP10176 69 aa8.65□□□□□ -1.02
CLN3-264ENST00000637985 KRTAP9-8Q9BYQ0 159 aa8.65□□□□□ -1.02
CLN3-264ENST00000637985 BVES-AS1Q5T3Y7 98 aa8.64□□□□□ -1.03
CLN3-264ENST00000637985 Q6JHZ5 121 aa8.64□□□□□ -1.03
CLN3-264ENST00000637985 DLEU1O43261 78 aa8.63□□□□□ -1.03
CLN3-264ENST00000637985 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.63□□□□□ -1.03
CLN3-264ENST00000637985 PPDPFLQ8WWR9 84 aa8.61□□□□□ -1.03
CLN3-264ENST00000637985 C12orf57Q99622 126 aa8.61□□□□□ -1.03
CLN3-264ENST00000637985 OCIAD2Q56VL3 154 aa8.6□□□□□ -1.03
CLN3-264ENST00000637985 CLEC2BQ92478 149 aa8.6□□□□□ -1.03
CLN3-264ENST00000637985 IGFL1Q6UW32 110 aa8.58□□□□□ -1.04
CLN3-264ENST00000637985 TRBV7-7A0A0K0K1E9 115 aa8.57□□□□□ -1.04
CLN3-264ENST00000637985 RPL37P61927 97 aaKnown RBP8.56□□□□□ -1.04
CLN3-264ENST00000637985 SNHG12Q9BXW3 62 aa8.56□□□□□ -1.04
CLN3-264ENST00000637985 HIGD1BQ9P298 99 aa8.56□□□□□ -1.04
CLN3-264ENST00000637985 SNCGO76070 127 aa8.55□□□□□ -1.04
CLN3-264ENST00000637985 RAB37Q96AX2 223 aa8.55□□□□□ -1.04
CLN3-264ENST00000637985 C14orf144Q96I85 54 aa8.55□□□□□ -1.04
CLN3-264ENST00000637985 A0A0B4J2C4 111 aa8.53□□□□□ -1.04
CLN3-264ENST00000637985 H0YGX0 51 aa8.53□□□□□ -1.04
CLN3-264ENST00000637985 LCE2BO14633 110 aa8.53□□□□□ -1.04
CLN3-264ENST00000637985 SPATA45Q537H7 98 aa8.53□□□□□ -1.04
CLN3-264ENST00000637985 PAM16Q9Y3D7 125 aa8.53□□□□□ -1.04
CLN3-264ENST00000637985 VAMP8Q9BV40 100 aa8.51□□□□□ -1.05
CLN3-264ENST00000637985 Q6Q795 121 aa8.49□□□□□ -1.05
CLN3-264ENST00000637985 C2orf91Q6ZV80 131 aa8.49□□□□□ -1.05
CLN3-264ENST00000637985 H3BUT2 72 aa8.48□□□□□ -1.05
CLN3-264ENST00000637985 LST1O00453 97 aa8.47□□□□□ -1.05
CLN3-264ENST00000637985 CEND1Q8N111 149 aa8.47□□□□□ -1.05
CLN3-264ENST00000637985 TMEM238LA0A1B0GVL6 79 aa8.46□□□□□ -1.06
CLN3-264ENST00000637985 A0A1B0GX51 115 aa8.46□□□□□ -1.06
CLN3-264ENST00000637985 A6NJY4 79 aa8.46□□□□□ -1.06
CLN3-264ENST00000637985 GHRHP01286 108 aa8.46□□□□□ -1.06
CLN3-264ENST00000637985 FAM218AQ96MZ4 157 aa8.46□□□□□ -1.06
CLN3-264ENST00000637985 SS18L2Q9UHA2 77 aa8.45□□□□□ -1.06
CLN3-264ENST00000637985 PRO1854Q9UHT4 67 aa8.45□□□□□ -1.06
CLN3-264ENST00000637985 NDUFV3P56181 108 aaKnown RBP8.44□□□□□ -1.06
CLN3-264ENST00000637985 KRTAP6-3Q3LI67 103 aa8.43□□□□□ -1.06
CLN3-264ENST00000637985 TEN1Q86WV5 123 aa8.43□□□□□ -1.06
CLN3-264ENST00000637985 OBSCN-AS1Q96MR7 158 aa8.43□□□□□ -1.06
CLN3-264ENST00000637985 MT2AP02795 61 aa8.42□□□□□ -1.06
CLN3-264ENST00000637985 Q75L30 129 aa8.42□□□□□ -1.06
CLN3-264ENST00000637985 H3BMG7 143 aa8.4□□□□□ -1.06
CLN3-264ENST00000637985 FXYD2P54710 66 aa8.4□□□□□ -1.06
CLN3-264ENST00000637985 ATP11AUNQ6ZP68 121 aa8.4□□□□□ -1.06
CLN3-264ENST00000637985 KRTAP9-3Q9BYQ3 159 aa8.4□□□□□ -1.06
CLN3-264ENST00000637985 NEBP20929 6669 aa8.4□□□□□ -1.07
CLN3-264ENST00000637985 FABP2P12104 132 aa8.38□□□□□ -1.07
CLN3-264ENST00000637985 TRIAP1O43715 76 aa8.37□□□□□ -1.07
CLN3-264ENST00000637985 LINC00846Q9NV44 126 aa8.37□□□□□ -1.07
CLN3-264ENST00000637985 A0A087WSZ3 146 aa8.36□□□□□ -1.07
CLN3-264ENST00000637985 MT1FP04733 61 aa8.36□□□□□ -1.07
CLN3-264ENST00000637985 Q96NJ1 140 aa8.36□□□□□ -1.07
CLN3-264ENST00000637985 H3BQ85 93 aa8.35□□□□□ -1.07
CLN3-264ENST00000637985 HSD52Q0P140 79 aa8.34□□□□□ -1.07
CLN3-264ENST00000637985 KRTAP19-6Q3LI70 58 aa8.34□□□□□ -1.07
CLN3-264ENST00000637985 DNAL4O96015 105 aa8.33□□□□□ -1.08
CLN3-264ENST00000637985 PYY3Q5JQD4 70 aa8.33□□□□□ -1.08
CLN3-264ENST00000637985 C20orf166-AS1Q96NR2 134 aa8.32□□□□□ -1.08
CLN3-264ENST00000637985 ORMDL1Q9P0S3 153 aa8.32□□□□□ -1.08
CLN3-264ENST00000637985 A0A1W2PNM2 257 aa8.31□□□□□ -1.08
CLN3-264ENST00000637985 COX6CP09669 75 aa8.31□□□□□ -1.08
CLN3-264ENST00000637985 PSMB2P49721 201 aa8.31□□□□□ -1.08
CLN3-264ENST00000637985 A8MUU9 505 aa8.3□□□□□ -1.08
CLN3-264ENST00000637985 ANKRD29Q8N6D5 301 aa8.3□□□□□ -1.08
CLN3-264ENST00000637985 TRBV7-4A0A0J9YYF1 115 aa8.29□□□□□ -1.08
CLN3-264ENST00000637985 TMEM256-PLSCR3K7ERE1 68 aa8.29□□□□□ -1.08
CLN3-264ENST00000637985 K7ERJ3 54 aa8.28□□□□□ -1.08
CLN3-264ENST00000637985 TMA7Q9Y2S6 64 aaKnown RBP8.28□□□□□ -1.08
CLN3-264ENST00000637985 KRTAP10-10P60014 251 aa8.27□□□□□ -1.09
CLN3-264ENST00000637985 UQCR10Q9UDW1 63 aa8.26□□□□□ -1.09
CLN3-264ENST00000637985 SIGMAR1Q99720 223 aa8.25□□□□□ -1.09
CLN3-264ENST00000637985 DSCR10P59022 87 aa8.24□□□□□ -1.09
CLN3-264ENST00000637985 UBE2V1Q13404 147 aa8.24□□□□□ -1.09
CLN3-264ENST00000637985 A0A1B0GV72 72 aa8.22□□□□□ -1.09
CLN3-264ENST00000637985 IGKV4-1P06312 121 aa8.22□□□□□ -1.09
CLN3-264ENST00000637985 LINC00313P59037 77 aa8.22□□□□□ -1.09
CLN3-264ENST00000637985 CCKP06307 115 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms