RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 MGAM2Q2M2H8 2515 aa7.97□□□□□ -1.13
LINC00540-203ENST00000631321 SMIM26A0A096LP01 95 aa7.97□□□□□ -1.13
LINC00540-203ENST00000631321 A0A0G2JQZ4 141 aa7.97□□□□□ -1.13
LINC00540-203ENST00000631321 KRTAP11-1Q8IUC1 163 aa7.97□□□□□ -1.13
LINC00540-203ENST00000631321 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.95□□□□□ -1.14
LINC00540-203ENST00000631321 PHF5AQ7RTV0 110 aaKnown RBP7.95□□□□□ -1.14
LINC00540-203ENST00000631321 HCG22E2RYF7 251 aa7.95□□□□□ -1.14
LINC00540-203ENST00000631321 CHTF8P0CG12 524 aa7.94□□□□□ -1.14
LINC00540-203ENST00000631321 UBE2AP49459 152 aa7.94□□□□□ -1.14
LINC00540-203ENST00000631321 HRCT1Q6UXD1 115 aa7.94□□□□□ -1.14
LINC00540-203ENST00000631321 C9orf163Q8N9P6 203 aa7.94□□□□□ -1.14
LINC00540-203ENST00000631321 LRCOL1A6NCL2 159 aa7.94□□□□□ -1.14
LINC00540-203ENST00000631321 ZCCHC13Q8WW36 166 aaKnown RBP7.94□□□□□ -1.14
LINC00540-203ENST00000631321 PKIGQ9Y2B9 76 aa7.94□□□□□ -1.14
LINC00540-203ENST00000631321 A0A087WSZ3 146 aa7.93□□□□□ -1.14
LINC00540-203ENST00000631321 FP248Q71RG6 208 aaPredicted RBP7.93□□□□□ -1.14
LINC00540-203ENST00000631321 COL7A1Q02388 2944 aa7.91□□□□□ -1.14
LINC00540-203ENST00000631321 B9D2Q9BPU9 175 aa7.91□□□□□ -1.14
LINC00540-203ENST00000631321 LINC00474Q9P2X8 69 aa7.91□□□□□ -1.14
LINC00540-203ENST00000631321 PLECQ15149 4684 aaKnown RBP7.91□□□□□ -1.14
LINC00540-203ENST00000631321 NBDYA0A0U1RRE5 68 aa7.9□□□□□ -1.15
LINC00540-203ENST00000631321 Q6ZRN7 208 aaPredicted RBP7.89□□□□□ -1.15
LINC00540-203ENST00000631321 DEFB116Q30KQ4 102 aa7.88□□□□□ -1.15
LINC00540-203ENST00000631321 KRTAP13-1Q8IUC0 172 aa7.88□□□□□ -1.15
LINC00540-203ENST00000631321 DNAH7Q8WXX0 4024 aa7.88□□□□□ -1.15
LINC00540-203ENST00000631321 KRTAP29-1A8MX34 341 aaPredicted RBP7.87□□□□□ -1.15
LINC00540-203ENST00000631321 LINC00472Q9H8W2 130 aa7.86□□□□□ -1.15
LINC00540-203ENST00000631321 CSMD3Q7Z407 3707 aa7.86□□□□□ -1.15
LINC00540-203ENST00000631321 PANO1I0J062 215 aa7.86□□□□□ -1.15
LINC00540-203ENST00000631321 NUPR2A6NF83 97 aa7.85□□□□□ -1.15
LINC00540-203ENST00000631321 FAM229BQ4G0N7 80 aa7.84□□□□□ -1.15
LINC00540-203ENST00000631321 PRR15Q8IV56 129 aa7.84□□□□□ -1.15
LINC00540-203ENST00000631321 RPL37AP61513 92 aaKnown RBP7.84□□□□□ -1.15
LINC00540-203ENST00000631321 WFDC13Q8IUB5 93 aa7.84□□□□□ -1.15
LINC00540-203ENST00000631321 MDFIQ99750 246 aa7.83□□□□□ -1.16
LINC00540-203ENST00000631321 A8MWP4 228 aa7.83□□□□□ -1.16
LINC00540-203ENST00000631321 VPS13DQ5THJ4 4388 aa7.83□□□□□ -1.16
LINC00540-203ENST00000631321 SPACA4Q8TDM5 124 aa7.82□□□□□ -1.16
LINC00540-203ENST00000631321 hDV103S1A0JD37 113 aa7.81□□□□□ -1.16
LINC00540-203ENST00000631321 SRRM2Q9UQ35 2752 aaKnown RBP7.81□□□□□ -1.16
LINC00540-203ENST00000631321 CASC2Q6XLA1 102 aa7.8□□□□□ -1.16
LINC00540-203ENST00000631321 CYP4F30PQ9H0H9 118 aa7.8□□□□□ -1.16
LINC00540-203ENST00000631321 TENM2Q9NT68 2774 aa7.8□□□□□ -1.16
LINC00540-203ENST00000631321 NDUFB1O75438 58 aa7.79□□□□□ -1.16
LINC00540-203ENST00000631321 MP68P56378 58 aa7.79□□□□□ -1.16
LINC00540-203ENST00000631321 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.79□□□□□ -1.16
LINC00540-203ENST00000631321 LINC00336Q6ZUF6 198 aa7.78□□□□□ -1.16
LINC00540-203ENST00000631321 H3BPC8 53 aa7.78□□□□□ -1.16
LINC00540-203ENST00000631321 LINC00483Q53H64 154 aa7.78□□□□□ -1.16
LINC00540-203ENST00000631321 TRAV22A0A0B4J277 110 aa7.77□□□□□ -1.17
LINC00540-203ENST00000631321 C1orf64Q8NEQ6 169 aa7.77□□□□□ -1.17
LINC00540-203ENST00000631321 STARD9Q9P2P6 4700 aa7.76□□□□□ -1.17
LINC00540-203ENST00000631321 A0A087WTM6 91 aa7.76□□□□□ -1.17
LINC00540-203ENST00000631321 HECTD4Q9Y4D8 3996 aa7.75□□□□□ -1.17
LINC00540-203ENST00000631321 MMP24-AS1A0A0U1RRL7 71 aa7.74□□□□□ -1.17
LINC00540-203ENST00000631321 MPLKIPQ8TAP9 179 aa7.74□□□□□ -1.17
LINC00540-203ENST00000631321 LINC00208Q96KT6 92 aa7.74□□□□□ -1.17
LINC00540-203ENST00000631321 PRKDCP78527 4128 aaKnown RBP7.74□□□□□ -1.17
LINC00540-203ENST00000631321 H0Y9P7 68 aa7.73□□□□□ -1.17
LINC00540-203ENST00000631321 Q96NJ1 140 aa7.73□□□□□ -1.17
LINC00540-203ENST00000631321 PRO0628Q9UI54 55 aa7.73□□□□□ -1.17
LINC00540-203ENST00000631321 ZNF706Q9Y5V0 76 aaPredicted RBP7.72□□□□□ -1.17
LINC00540-203ENST00000631321 DNAH17Q9UFH2 4485 aa7.72□□□□□ -1.17
LINC00540-203ENST00000631321 ASB16-AS1Q495Z4 193 aa7.71□□□□□ -1.17
LINC00540-203ENST00000631321 SPANXA2-OT1Q8N9U9 137 aa7.71□□□□□ -1.17
LINC00540-203ENST00000631321 IGLV9-49A0A0B4J1Y8 123 aa7.71□□□□□ -1.18
LINC00540-203ENST00000631321 IGLV5-52A0A0A0MRZ9 124 aa7.7□□□□□ -1.18
LINC00540-203ENST00000631321 Q1T7F1 81 aa7.7□□□□□ -1.18
LINC00540-203ENST00000631321 PLAC8Q9NZF1 115 aa7.7□□□□□ -1.18
LINC00540-203ENST00000631321 RTL8CO15255 209 aa7.69□□□□□ -1.18
LINC00540-203ENST00000631321 Q6ZR54 194 aa7.69□□□□□ -1.18
LINC00540-203ENST00000631321 WWC2-AS2Q96NR7 200 aa7.69□□□□□ -1.18
LINC00540-203ENST00000631321 PSORS1C2Q9UIG4 136 aa7.69□□□□□ -1.18
LINC00540-203ENST00000631321 PRR4Q16378 134 aa7.68□□□□□ -1.18
LINC00540-203ENST00000631321 DNAH2Q9P225 4427 aa7.67□□□□□ -1.18
LINC00540-203ENST00000631321 DNAH8Q96JB1 4490 aa7.67□□□□□ -1.18
LINC00540-203ENST00000631321 MOBPQ13875 183 aa7.67□□□□□ -1.18
LINC00540-203ENST00000631321 ZNF861PO60384 105 aa7.66□□□□□ -1.18
LINC00540-203ENST00000631321 TP53AIP1Q9HCN2 124 aa7.64□□□□□ -1.19
LINC00540-203ENST00000631321 C8orf17Q9NRJ1 99 aa7.64□□□□□ -1.19
LINC00540-203ENST00000631321 KMT2AQ03164 3969 aa7.63□□□□□ -1.19
LINC00540-203ENST00000631321 A0A1B0GVX0 72 aa7.62□□□□□ -1.19
LINC00540-203ENST00000631321 FRAS1Q86XX4 4008 aa7.62□□□□□ -1.19
LINC00540-203ENST00000631321 BRK1Q8WUW1 75 aa7.61□□□□□ -1.19
LINC00540-203ENST00000631321 ANAPC11Q9NYG5 84 aa7.6□□□□□ -1.19
LINC00540-203ENST00000631321 IGLV7-46A0A075B6I9 117 aa7.59□□□□□ -1.19
LINC00540-203ENST00000631321 V9GYY9 64 aa7.59□□□□□ -1.19
LINC00540-203ENST00000631321 IGHV6-1A0A0B4J1U7 121 aa7.58□□□□□ -1.2
LINC00540-203ENST00000631321 C1orf134Q5TEV5 83 aa7.58□□□□□ -1.2
LINC00540-203ENST00000631321 CDK2AP2O75956 126 aa7.57□□□□□ -1.2
LINC00540-203ENST00000631321 IGLV7-43P04211 117 aa7.56□□□□□ -1.2
LINC00540-203ENST00000631321 DNAH6Q9C0G6 4158 aa7.56□□□□□ -1.2
LINC00540-203ENST00000631321 MRPL34Q9BQ48 92 aaKnown RBP7.56□□□□□ -1.2
LINC00540-203ENST00000631321 PSPHP1O15172 72 aa7.53□□□□□ -1.2
LINC00540-203ENST00000631321 CD164Q04900 197 aa7.53□□□□□ -1.2
LINC00540-203ENST00000631321 C1orf195Q5TG92 126 aa7.53□□□□□ -1.2
LINC00540-203ENST00000631321 MEGF8Q7Z7M0 2845 aa7.52□□□□□ -1.2
LINC00540-203ENST00000631321 A0A087X002 238 aa7.52□□□□□ -1.2
LINC00540-203ENST00000631321 NOTCH2NLQ7Z3S9 236 aa7.52□□□□□ -1.2
LINC00540-203ENST00000631321 DNAH11Q96DT5 4516 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 125.7 ms