RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 MGAM2Q2M2H8 2515 aa7.97□□□□□ -1.13
LINC00540-203ENST00000631321 SMIM26A0A096LP01 95 aa7.97□□□□□ -1.13
LINC00540-203ENST00000631321 A0A0G2JQZ4 141 aa7.97□□□□□ -1.13
LINC00540-203ENST00000631321 KRTAP11-1Q8IUC1 163 aa7.97□□□□□ -1.13
LINC00540-203ENST00000631321 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.95□□□□□ -1.14
LINC00540-203ENST00000631321 PHF5AQ7RTV0 110 aaKnown RBP7.95□□□□□ -1.14
LINC00540-203ENST00000631321 HCG22E2RYF7 251 aa7.95□□□□□ -1.14
LINC00540-203ENST00000631321 CHTF8P0CG12 524 aa7.94□□□□□ -1.14
LINC00540-203ENST00000631321 UBE2AP49459 152 aa7.94□□□□□ -1.14
LINC00540-203ENST00000631321 HRCT1Q6UXD1 115 aa7.94□□□□□ -1.14
LINC00540-203ENST00000631321 C9orf163Q8N9P6 203 aa7.94□□□□□ -1.14
LINC00540-203ENST00000631321 LRCOL1A6NCL2 159 aa7.94□□□□□ -1.14
LINC00540-203ENST00000631321 ZCCHC13Q8WW36 166 aaKnown RBP7.94□□□□□ -1.14
LINC00540-203ENST00000631321 PKIGQ9Y2B9 76 aa7.94□□□□□ -1.14
LINC00540-203ENST00000631321 A0A087WSZ3 146 aa7.93□□□□□ -1.14
LINC00540-203ENST00000631321 FP248Q71RG6 208 aaPredicted RBP7.93□□□□□ -1.14
LINC00540-203ENST00000631321 COL7A1Q02388 2944 aa7.91□□□□□ -1.14
LINC00540-203ENST00000631321 B9D2Q9BPU9 175 aa7.91□□□□□ -1.14
LINC00540-203ENST00000631321 LINC00474Q9P2X8 69 aa7.91□□□□□ -1.14
LINC00540-203ENST00000631321 PLECQ15149 4684 aaKnown RBP7.91□□□□□ -1.14
LINC00540-203ENST00000631321 NBDYA0A0U1RRE5 68 aa7.9□□□□□ -1.15
LINC00540-203ENST00000631321 Q6ZRN7 208 aaPredicted RBP7.89□□□□□ -1.15
LINC00540-203ENST00000631321 DEFB116Q30KQ4 102 aa7.88□□□□□ -1.15
LINC00540-203ENST00000631321 KRTAP13-1Q8IUC0 172 aa7.88□□□□□ -1.15
LINC00540-203ENST00000631321 DNAH7Q8WXX0 4024 aa7.88□□□□□ -1.15
LINC00540-203ENST00000631321 KRTAP29-1A8MX34 341 aaPredicted RBP7.87□□□□□ -1.15
LINC00540-203ENST00000631321 LINC00472Q9H8W2 130 aa7.86□□□□□ -1.15
LINC00540-203ENST00000631321 CSMD3Q7Z407 3707 aa7.86□□□□□ -1.15
LINC00540-203ENST00000631321 PANO1I0J062 215 aa7.86□□□□□ -1.15
LINC00540-203ENST00000631321 NUPR2A6NF83 97 aa7.85□□□□□ -1.15
LINC00540-203ENST00000631321 FAM229BQ4G0N7 80 aa7.84□□□□□ -1.15
LINC00540-203ENST00000631321 PRR15Q8IV56 129 aa7.84□□□□□ -1.15
LINC00540-203ENST00000631321 RPL37AP61513 92 aaKnown RBP7.84□□□□□ -1.15
LINC00540-203ENST00000631321 WFDC13Q8IUB5 93 aa7.84□□□□□ -1.15
LINC00540-203ENST00000631321 MDFIQ99750 246 aa7.83□□□□□ -1.16
LINC00540-203ENST00000631321 A8MWP4 228 aa7.83□□□□□ -1.16
LINC00540-203ENST00000631321 VPS13DQ5THJ4 4388 aa7.83□□□□□ -1.16
LINC00540-203ENST00000631321 SPACA4Q8TDM5 124 aa7.82□□□□□ -1.16
LINC00540-203ENST00000631321 hDV103S1A0JD37 113 aa7.81□□□□□ -1.16
LINC00540-203ENST00000631321 SRRM2Q9UQ35 2752 aaKnown RBP7.81□□□□□ -1.16
LINC00540-203ENST00000631321 CASC2Q6XLA1 102 aa7.8□□□□□ -1.16
LINC00540-203ENST00000631321 CYP4F30PQ9H0H9 118 aa7.8□□□□□ -1.16
LINC00540-203ENST00000631321 TENM2Q9NT68 2774 aa7.8□□□□□ -1.16
LINC00540-203ENST00000631321 NDUFB1O75438 58 aa7.79□□□□□ -1.16
LINC00540-203ENST00000631321 MP68P56378 58 aa7.79□□□□□ -1.16
LINC00540-203ENST00000631321 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.79□□□□□ -1.16
LINC00540-203ENST00000631321 LINC00336Q6ZUF6 198 aa7.78□□□□□ -1.16
LINC00540-203ENST00000631321 H3BPC8 53 aa7.78□□□□□ -1.16
LINC00540-203ENST00000631321 LINC00483Q53H64 154 aa7.78□□□□□ -1.16
LINC00540-203ENST00000631321 TRAV22A0A0B4J277 110 aa7.77□□□□□ -1.17
LINC00540-203ENST00000631321 C1orf64Q8NEQ6 169 aa7.77□□□□□ -1.17
LINC00540-203ENST00000631321 STARD9Q9P2P6 4700 aa7.76□□□□□ -1.17
LINC00540-203ENST00000631321 A0A087WTM6 91 aa7.76□□□□□ -1.17
LINC00540-203ENST00000631321 HECTD4Q9Y4D8 3996 aa7.75□□□□□ -1.17
LINC00540-203ENST00000631321 MMP24-AS1A0A0U1RRL7 71 aa7.74□□□□□ -1.17
LINC00540-203ENST00000631321 MPLKIPQ8TAP9 179 aa7.74□□□□□ -1.17
LINC00540-203ENST00000631321 LINC00208Q96KT6 92 aa7.74□□□□□ -1.17
LINC00540-203ENST00000631321 PRKDCP78527 4128 aaKnown RBP7.74□□□□□ -1.17
LINC00540-203ENST00000631321 H0Y9P7 68 aa7.73□□□□□ -1.17
LINC00540-203ENST00000631321 Q96NJ1 140 aa7.73□□□□□ -1.17
LINC00540-203ENST00000631321 PRO0628Q9UI54 55 aa7.73□□□□□ -1.17
LINC00540-203ENST00000631321 ZNF706Q9Y5V0 76 aaPredicted RBP7.72□□□□□ -1.17
LINC00540-203ENST00000631321 DNAH17Q9UFH2 4485 aa7.72□□□□□ -1.17
LINC00540-203ENST00000631321 ASB16-AS1Q495Z4 193 aa7.71□□□□□ -1.17
LINC00540-203ENST00000631321 SPANXA2-OT1Q8N9U9 137 aa7.71□□□□□ -1.17
LINC00540-203ENST00000631321 IGLV9-49A0A0B4J1Y8 123 aa7.71□□□□□ -1.18
LINC00540-203ENST00000631321 IGLV5-52A0A0A0MRZ9 124 aa7.7□□□□□ -1.18
LINC00540-203ENST00000631321 Q1T7F1 81 aa7.7□□□□□ -1.18
LINC00540-203ENST00000631321 PLAC8Q9NZF1 115 aa7.7□□□□□ -1.18
LINC00540-203ENST00000631321 RTL8CO15255 209 aa7.69□□□□□ -1.18
LINC00540-203ENST00000631321 Q6ZR54 194 aa7.69□□□□□ -1.18
LINC00540-203ENST00000631321 WWC2-AS2Q96NR7 200 aa7.69□□□□□ -1.18
LINC00540-203ENST00000631321 PSORS1C2Q9UIG4 136 aa7.69□□□□□ -1.18
LINC00540-203ENST00000631321 PRR4Q16378 134 aa7.68□□□□□ -1.18
LINC00540-203ENST00000631321 DNAH2Q9P225 4427 aa7.67□□□□□ -1.18
LINC00540-203ENST00000631321 DNAH8Q96JB1 4490 aa7.67□□□□□ -1.18
LINC00540-203ENST00000631321 MOBPQ13875 183 aa7.67□□□□□ -1.18
LINC00540-203ENST00000631321 ZNF861PO60384 105 aa7.66□□□□□ -1.18
LINC00540-203ENST00000631321 TP53AIP1Q9HCN2 124 aa7.64□□□□□ -1.19
LINC00540-203ENST00000631321 C8orf17Q9NRJ1 99 aa7.64□□□□□ -1.19
LINC00540-203ENST00000631321 KMT2AQ03164 3969 aa7.63□□□□□ -1.19
LINC00540-203ENST00000631321 A0A1B0GVX0 72 aa7.62□□□□□ -1.19
LINC00540-203ENST00000631321 FRAS1Q86XX4 4008 aa7.62□□□□□ -1.19
LINC00540-203ENST00000631321 BRK1Q8WUW1 75 aa7.61□□□□□ -1.19
LINC00540-203ENST00000631321 ANAPC11Q9NYG5 84 aa7.6□□□□□ -1.19
LINC00540-203ENST00000631321 IGLV7-46A0A075B6I9 117 aa7.59□□□□□ -1.19
LINC00540-203ENST00000631321 V9GYY9 64 aa7.59□□□□□ -1.19
LINC00540-203ENST00000631321 IGHV6-1A0A0B4J1U7 121 aa7.58□□□□□ -1.2
LINC00540-203ENST00000631321 C1orf134Q5TEV5 83 aa7.58□□□□□ -1.2
LINC00540-203ENST00000631321 CDK2AP2O75956 126 aa7.57□□□□□ -1.2
LINC00540-203ENST00000631321 IGLV7-43P04211 117 aa7.56□□□□□ -1.2
LINC00540-203ENST00000631321 DNAH6Q9C0G6 4158 aa7.56□□□□□ -1.2
LINC00540-203ENST00000631321 MRPL34Q9BQ48 92 aaKnown RBP7.56□□□□□ -1.2
LINC00540-203ENST00000631321 PSPHP1O15172 72 aa7.53□□□□□ -1.2
LINC00540-203ENST00000631321 CD164Q04900 197 aa7.53□□□□□ -1.2
LINC00540-203ENST00000631321 C1orf195Q5TG92 126 aa7.53□□□□□ -1.2
LINC00540-203ENST00000631321 MEGF8Q7Z7M0 2845 aa7.52□□□□□ -1.2
LINC00540-203ENST00000631321 A0A087X002 238 aa7.52□□□□□ -1.2
LINC00540-203ENST00000631321 NOTCH2NLQ7Z3S9 236 aa7.52□□□□□ -1.2
LINC00540-203ENST00000631321 DNAH11Q96DT5 4516 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms