RNA–Protein interactions for RNA: ENST00000629667.2

PDLIM3-213, Transcript of PDZ and LIM domain 3, humanhuman

TSL 5 BASIC

Gene PDLIM3, Length 1,016 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-213ENST00000629667 PET117Q6UWS5 81 aa7.97□□□□□ -1.13
PDLIM3-213ENST00000629667 TRAV13-2A0A0B4J235 113 aa7.96□□□□□ -1.14
PDLIM3-213ENST00000629667 HIST1H2BKO60814 126 aa7.96□□□□□ -1.14
PDLIM3-213ENST00000629667 HIST1H2BJP06899 126 aa7.96□□□□□ -1.14
PDLIM3-213ENST00000629667 HIST1H2BOP23527 126 aa7.96□□□□□ -1.14
PDLIM3-213ENST00000629667 HIST1H2BBP33778 126 aa7.96□□□□□ -1.14
PDLIM3-213ENST00000629667 HIST1H2BDP58876 126 aa7.96□□□□□ -1.14
PDLIM3-213ENST00000629667 HIST1H2BCP62807 126 aa7.96□□□□□ -1.14
PDLIM3-213ENST00000629667 HIST2H2BEQ16778 126 aa7.96□□□□□ -1.14
PDLIM3-213ENST00000629667 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.96□□□□□ -1.14
PDLIM3-213ENST00000629667 MUSTN1Q8IVN3 82 aa7.96□□□□□ -1.14
PDLIM3-213ENST00000629667 HIST1H2BHQ93079 126 aa7.96□□□□□ -1.14
PDLIM3-213ENST00000629667 HIST1H2BNQ99877 126 aa7.96□□□□□ -1.14
PDLIM3-213ENST00000629667 HIST1H2BMQ99879 126 aa7.96□□□□□ -1.14
PDLIM3-213ENST00000629667 Q6ZVH6 145 aa7.95□□□□□ -1.14
PDLIM3-213ENST00000629667 KRTAP19-1Q8IUB9 90 aa7.95□□□□□ -1.14
PDLIM3-213ENST00000629667 VAMP3Q15836 100 aa7.94□□□□□ -1.14
PDLIM3-213ENST00000629667 LST1O00453 97 aa7.93□□□□□ -1.14
PDLIM3-213ENST00000629667 Q6ZQY7 126 aa7.93□□□□□ -1.14
PDLIM3-213ENST00000629667 MT2AP02795 61 aa7.92□□□□□ -1.14
PDLIM3-213ENST00000629667 OCIAD2Q56VL3 154 aa7.92□□□□□ -1.14
PDLIM3-213ENST00000629667 LINC00575Q6W349 94 aa7.92□□□□□ -1.14
PDLIM3-213ENST00000629667 C20orf166-AS1Q96NR2 134 aa7.92□□□□□ -1.14
PDLIM3-213ENST00000629667 hADV29S1A0JD25 119 aa7.91□□□□□ -1.14
PDLIM3-213ENST00000629667 MACF1Q9UPN3 7388 aaKnown RBP7.89□□□□□ -1.15
PDLIM3-213ENST00000629667 A8MUU9 505 aa7.89□□□□□ -1.15
PDLIM3-213ENST00000629667 LCE2BO14633 110 aa7.89□□□□□ -1.15
PDLIM3-213ENST00000629667 C3orf79P0CE67 100 aa7.89□□□□□ -1.15
PDLIM3-213ENST00000629667 COA6Q5JTJ3 125 aaKnown RBP7.89□□□□□ -1.15
PDLIM3-213ENST00000629667 ANKRD39Q53RE8 183 aa7.88□□□□□ -1.15
PDLIM3-213ENST00000629667 FAM236DA0A1B0GTK5 79 aa7.87□□□□□ -1.15
PDLIM3-213ENST00000629667 FAM236CP0DP71 79 aa7.87□□□□□ -1.15
PDLIM3-213ENST00000629667 TMA7Q9Y2S6 64 aaKnown RBP7.87□□□□□ -1.15
PDLIM3-213ENST00000629667 SYNE2Q8WXH0 6885 aaKnown RBP7.87□□□□□ -1.15
PDLIM3-213ENST00000629667 MT1FP04733 61 aa7.86□□□□□ -1.15
PDLIM3-213ENST00000629667 KRTDAPP60985 99 aa7.86□□□□□ -1.15
PDLIM3-213ENST00000629667 SNHG12Q9BXW3 62 aa7.85□□□□□ -1.15
PDLIM3-213ENST00000629667 SS18L2Q9UHA2 77 aa7.85□□□□□ -1.15
PDLIM3-213ENST00000629667 KRTAP10-10P60014 251 aa7.84□□□□□ -1.15
PDLIM3-213ENST00000629667 KRTAP9-3Q9BYQ3 159 aa7.84□□□□□ -1.15
PDLIM3-213ENST00000629667 H3BUT2 72 aa7.83□□□□□ -1.16
PDLIM3-213ENST00000629667 SCGB1D1O95968 90 aa7.83□□□□□ -1.16
PDLIM3-213ENST00000629667 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.83□□□□□ -1.16
PDLIM3-213ENST00000629667 PPDPFLQ8WWR9 84 aa7.83□□□□□ -1.16
PDLIM3-213ENST00000629667 ATOH7Q8N100 152 aa7.82□□□□□ -1.16
PDLIM3-213ENST00000629667 LINC00846Q9NV44 126 aa7.79□□□□□ -1.16
PDLIM3-213ENST00000629667 RBM12B-AS1Q9P1G2 102 aa7.79□□□□□ -1.16
PDLIM3-213ENST00000629667 DSCR10P59022 87 aa7.78□□□□□ -1.16
PDLIM3-213ENST00000629667 HIST3H2BBQ8N257 126 aa7.78□□□□□ -1.16
PDLIM3-213ENST00000629667 TEN1Q86WV5 123 aa7.77□□□□□ -1.17
PDLIM3-213ENST00000629667 BVES-AS1Q5T3Y7 98 aa7.76□□□□□ -1.17
PDLIM3-213ENST00000629667 A0A087WSZ3 146 aa7.75□□□□□ -1.17
PDLIM3-213ENST00000629667 KRTAP16-1A8MUX0 517 aa7.75□□□□□ -1.17
PDLIM3-213ENST00000629667 S100A6P06703 90 aa7.74□□□□□ -1.17
PDLIM3-213ENST00000629667 SNRPEP62304 92 aaKnown RBP7.73□□□□□ -1.17
PDLIM3-213ENST00000629667 MPLKIPQ8TAP9 179 aa7.73□□□□□ -1.17
PDLIM3-213ENST00000629667 HIST1H2BLQ99880 126 aa7.73□□□□□ -1.17
PDLIM3-213ENST00000629667 HRES1P13985 223 aa7.72□□□□□ -1.17
PDLIM3-213ENST00000629667 C12orf57Q99622 126 aa7.72□□□□□ -1.17
PDLIM3-213ENST00000629667 SIGMAR1Q99720 223 aa7.72□□□□□ -1.17
PDLIM3-213ENST00000629667 S100A2P29034 98 aa7.71□□□□□ -1.18
PDLIM3-213ENST00000629667 LINC00313P59037 77 aa7.71□□□□□ -1.18
PDLIM3-213ENST00000629667 NDUFV3P56181 108 aaKnown RBP7.69□□□□□ -1.18
PDLIM3-213ENST00000629667 KRTAP19-6Q3LI70 58 aa7.69□□□□□ -1.18
PDLIM3-213ENST00000629667 SNCGO76070 127 aa7.68□□□□□ -1.18
PDLIM3-213ENST00000629667 NOTCH2NLQ7Z3S9 236 aa7.66□□□□□ -1.18
PDLIM3-213ENST00000629667 H3BMG7 143 aa7.65□□□□□ -1.18
PDLIM3-213ENST00000629667 MTURNQ8N3F0 131 aa7.65□□□□□ -1.18
PDLIM3-213ENST00000629667 IGKV4-1P06312 121 aa7.64□□□□□ -1.19
PDLIM3-213ENST00000629667 HSBP1L1C9JCN9 74 aa7.63□□□□□ -1.19
PDLIM3-213ENST00000629667 HIST1H4GQ99525 98 aa7.62□□□□□ -1.19
PDLIM3-213ENST00000629667 A0A1W2PNM2 257 aa7.6□□□□□ -1.19
PDLIM3-213ENST00000629667 H0YGX0 51 aa7.6□□□□□ -1.19
PDLIM3-213ENST00000629667 GHRHP01286 108 aa7.59□□□□□ -1.19
PDLIM3-213ENST00000629667 FABP2P12104 132 aa7.59□□□□□ -1.19
PDLIM3-213ENST00000629667 FAM218AQ96MZ4 157 aa7.59□□□□□ -1.19
PDLIM3-213ENST00000629667 KRTAP6-3Q3LI67 103 aa7.58□□□□□ -1.2
PDLIM3-213ENST00000629667 DEFB116Q30KQ4 102 aa7.56□□□□□ -1.2
PDLIM3-213ENST00000629667 RAB37Q96AX2 223 aa7.56□□□□□ -1.2
PDLIM3-213ENST00000629667 IGHV6-1A0A0B4J1U7 121 aa7.55□□□□□ -1.2
PDLIM3-213ENST00000629667 TRBV7-4A0A0J9YYF1 115 aa7.54□□□□□ -1.2
PDLIM3-213ENST00000629667 A8MWP4 228 aa7.54□□□□□ -1.2
PDLIM3-213ENST00000629667 ANKRD29Q8N6D5 301 aa7.53□□□□□ -1.2
PDLIM3-213ENST00000629667 A0A1B0GX51 115 aa7.52□□□□□ -1.21
PDLIM3-213ENST00000629667 SPINK7P58062 85 aa7.51□□□□□ -1.21
PDLIM3-213ENST00000629667 PYY3Q5JQD4 70 aa7.51□□□□□ -1.21
PDLIM3-213ENST00000629667 LINC00472Q9H8W2 130 aa7.51□□□□□ -1.21
PDLIM3-213ENST00000629667 Q8N9P0 234 aaPredicted RBP7.5□□□□□ -1.21
PDLIM3-213ENST00000629667 A0A0B4J2C4 111 aa7.49□□□□□ -1.21
PDLIM3-213ENST00000629667 A0A1B0GV72 72 aa7.48□□□□□ -1.21
PDLIM3-213ENST00000629667 C8orf87E5RJ46 101 aa7.48□□□□□ -1.21
PDLIM3-213ENST00000629667 ZCCHC13Q8WW36 166 aaKnown RBP7.48□□□□□ -1.21
PDLIM3-213ENST00000629667 COX8AP10176 69 aa7.47□□□□□ -1.21
PDLIM3-213ENST00000629667 PAM16Q9Y3D7 125 aa7.47□□□□□ -1.21
PDLIM3-213ENST00000629667 TRACP01848 142 aa7.46□□□□□ -1.22
PDLIM3-213ENST00000629667 SPATA45Q537H7 98 aa7.46□□□□□ -1.22
PDLIM3-213ENST00000629667 VAMP8Q9BV40 100 aa7.46□□□□□ -1.22
PDLIM3-213ENST00000629667 A0A1B0GVX0 72 aa7.45□□□□□ -1.22
PDLIM3-213ENST00000629667 CCKP06307 115 aa7.45□□□□□ -1.22
PDLIM3-213ENST00000629667 DLEU1O43261 78 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms