RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 IGFL1Q6UW32 110 aa7.41□□□□□ -1.22
PNKP-218ENST00000625299 SCGB1D4Q6XE38 83 aa7.41□□□□□ -1.22
PNKP-218ENST00000625299 KRTAP10-10P60014 251 aa7.4□□□□□ -1.22
PNKP-218ENST00000625299 SMIM11BQ8TCY0 68 aa7.39□□□□□ -1.23
PNKP-218ENST00000625299 COPS9Q8WXC6 57 aa7.39□□□□□ -1.23
PNKP-218ENST00000625299 LST1O00453 97 aa7.38□□□□□ -1.23
PNKP-218ENST00000625299 KRTAP9-3Q9BYQ3 159 aa7.38□□□□□ -1.23
PNKP-218ENST00000625299 TRAV13-2A0A0B4J235 113 aa7.37□□□□□ -1.23
PNKP-218ENST00000625299 C20orf166-AS1Q96NR2 134 aa7.37□□□□□ -1.23
PNKP-218ENST00000625299 IFITM1P13164 125 aa7.36□□□□□ -1.23
PNKP-218ENST00000625299 LINC01545Q5VT33 79 aa7.36□□□□□ -1.23
PNKP-218ENST00000625299 Q6ZQY7 126 aa7.36□□□□□ -1.23
PNKP-218ENST00000625299 MUSTN1Q8IVN3 82 aa7.36□□□□□ -1.23
PNKP-218ENST00000625299 A8MUU9 505 aa7.35□□□□□ -1.23
PNKP-218ENST00000625299 OCIAD2Q56VL3 154 aa7.34□□□□□ -1.23
PNKP-218ENST00000625299 VAMP3Q15836 100 aa7.33□□□□□ -1.24
PNKP-218ENST00000625299 LINC00575Q6W349 94 aa7.33□□□□□ -1.24
PNKP-218ENST00000625299 LINC00846Q9NV44 126 aa7.33□□□□□ -1.24
PNKP-218ENST00000625299 hADV29S1A0JD25 119 aa7.32□□□□□ -1.24
PNKP-218ENST00000625299 PET117Q6UWS5 81 aa7.32□□□□□ -1.24
PNKP-218ENST00000625299 H3BUT2 72 aa7.31□□□□□ -1.24
PNKP-218ENST00000625299 Q6ZVH6 145 aa7.31□□□□□ -1.24
PNKP-218ENST00000625299 COLCA2A8K830 154 aa7.29□□□□□ -1.24
PNKP-218ENST00000625299 SS18L2Q9UHA2 77 aa7.29□□□□□ -1.24
PNKP-218ENST00000625299 DSCR10P59022 87 aa7.28□□□□□ -1.24
PNKP-218ENST00000625299 ANKRD39Q53RE8 183 aa7.28□□□□□ -1.24
PNKP-218ENST00000625299 SNHG12Q9BXW3 62 aa7.28□□□□□ -1.24
PNKP-218ENST00000625299 RBM12B-AS1Q9P1G2 102 aa7.28□□□□□ -1.24
PNKP-218ENST00000625299 KRTAP16-1A8MUX0 517 aa7.26□□□□□ -1.25
PNKP-218ENST00000625299 C3orf79P0CE67 100 aa7.26□□□□□ -1.25
PNKP-218ENST00000625299 KRTDAPP60985 99 aa7.25□□□□□ -1.25
PNKP-218ENST00000625299 KRTAP19-6Q3LI70 58 aa7.25□□□□□ -1.25
PNKP-218ENST00000625299 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.24□□□□□ -1.25
PNKP-218ENST00000625299 SCGB1D1O95968 90 aa7.23□□□□□ -1.25
PNKP-218ENST00000625299 HRES1P13985 223 aa7.23□□□□□ -1.25
PNKP-218ENST00000625299 ATOH7Q8N100 152 aa7.23□□□□□ -1.25
PNKP-218ENST00000625299 HIST1H2BKO60814 126 aa7.22□□□□□ -1.25
PNKP-218ENST00000625299 HIST1H2BJP06899 126 aa7.22□□□□□ -1.25
PNKP-218ENST00000625299 HIST1H2BOP23527 126 aa7.22□□□□□ -1.25
PNKP-218ENST00000625299 HIST1H2BBP33778 126 aa7.22□□□□□ -1.25
PNKP-218ENST00000625299 HIST1H2BDP58876 126 aa7.22□□□□□ -1.25
PNKP-218ENST00000625299 HIST1H2BCP62807 126 aa7.22□□□□□ -1.25
PNKP-218ENST00000625299 HIST2H2BEQ16778 126 aa7.22□□□□□ -1.25
PNKP-218ENST00000625299 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.22□□□□□ -1.25
PNKP-218ENST00000625299 HIST1H2BHQ93079 126 aa7.22□□□□□ -1.25
PNKP-218ENST00000625299 SIGMAR1Q99720 223 aa7.22□□□□□ -1.25
PNKP-218ENST00000625299 HIST1H2BNQ99877 126 aa7.22□□□□□ -1.25
PNKP-218ENST00000625299 HIST1H2BMQ99879 126 aa7.22□□□□□ -1.25
PNKP-218ENST00000625299 A0A087WSZ3 146 aa7.21□□□□□ -1.26
PNKP-218ENST00000625299 MPLKIPQ8TAP9 179 aa7.21□□□□□ -1.26
PNKP-218ENST00000625299 PPDPFLQ8WWR9 84 aa7.21□□□□□ -1.26
PNKP-218ENST00000625299 TEN1Q86WV5 123 aa7.19□□□□□ -1.26
PNKP-218ENST00000625299 KRTAP6-3Q3LI67 103 aa7.18□□□□□ -1.26
PNKP-218ENST00000625299 LINC00313P59037 77 aa7.17□□□□□ -1.26
PNKP-218ENST00000625299 BVES-AS1Q5T3Y7 98 aa7.15□□□□□ -1.26
PNKP-218ENST00000625299 NOTCH2NLQ7Z3S9 236 aa7.15□□□□□ -1.26
PNKP-218ENST00000625299 C12orf57Q99622 126 aa7.15□□□□□ -1.26
PNKP-218ENST00000625299 COA6Q5JTJ3 125 aaKnown RBP7.14□□□□□ -1.27
PNKP-218ENST00000625299 MTURNQ8N3F0 131 aa7.13□□□□□ -1.27
PNKP-218ENST00000625299 NDUFV3P56181 108 aaKnown RBP7.12□□□□□ -1.27
PNKP-218ENST00000625299 IGKV4-1P06312 121 aa7.11□□□□□ -1.27
PNKP-218ENST00000625299 H3BMG7 143 aa7.08□□□□□ -1.28
PNKP-218ENST00000625299 Q8N9P0 234 aaPredicted RBP7.08□□□□□ -1.28
PNKP-218ENST00000625299 SNCGO76070 127 aa7.06□□□□□ -1.28
PNKP-218ENST00000625299 S100A6P06703 90 aa7.06□□□□□ -1.28
PNKP-218ENST00000625299 NEBP20929 6669 aa7.06□□□□□ -1.28
PNKP-218ENST00000625299 IGHV6-1A0A0B4J1U7 121 aa7.05□□□□□ -1.28
PNKP-218ENST00000625299 A0A1W2PNM2 257 aa7.05□□□□□ -1.28
PNKP-218ENST00000625299 A8MWP4 228 aa7.05□□□□□ -1.28
PNKP-218ENST00000625299 SNRPEP62304 92 aaKnown RBP7.05□□□□□ -1.28
PNKP-218ENST00000625299 DEFB116Q30KQ4 102 aa7.05□□□□□ -1.28
PNKP-218ENST00000625299 FABP2P12104 132 aa7.04□□□□□ -1.28
PNKP-218ENST00000625299 TMA7Q9Y2S6 64 aaKnown RBP7.04□□□□□ -1.28
PNKP-218ENST00000625299 FAM218AQ96MZ4 157 aa7.03□□□□□ -1.28
PNKP-218ENST00000625299 HIST1H4GQ99525 98 aa7.02□□□□□ -1.29
PNKP-218ENST00000625299 HIST3H2BBQ8N257 126 aa7.01□□□□□ -1.29
PNKP-218ENST00000625299 A0A1B0GV72 72 aa7□□□□□ -1.29
PNKP-218ENST00000625299 LOC105371267A0A1B0GV96 52 aa7□□□□□ -1.29
PNKP-218ENST00000625299 HSBP1L1C9JCN9 74 aa7□□□□□ -1.29
PNKP-218ENST00000625299 SPINK7P58062 85 aa7□□□□□ -1.29
PNKP-218ENST00000625299 MUC12Q9UKN1 5478 aa7□□□□□ -1.29
PNKP-218ENST00000625299 H0YGX0 51 aa6.99□□□□□ -1.29
PNKP-218ENST00000625299 RAB37Q96AX2 223 aa6.98□□□□□ -1.29
PNKP-218ENST00000625299 ANKRD29Q8N6D5 301 aa6.97□□□□□ -1.29
PNKP-218ENST00000625299 ZCCHC13Q8WW36 166 aaKnown RBP6.97□□□□□ -1.29
PNKP-218ENST00000625299 TRBV7-4A0A0J9YYF1 115 aa6.96□□□□□ -1.3
PNKP-218ENST00000625299 GHRHP01286 108 aa6.96□□□□□ -1.3
PNKP-218ENST00000625299 HIST1H2BLQ99880 126 aa6.96□□□□□ -1.3
PNKP-218ENST00000625299 LINC00472Q9H8W2 130 aa6.96□□□□□ -1.3
PNKP-218ENST00000625299 S100A2P29034 98 aa6.95□□□□□ -1.3
PNKP-218ENST00000625299 WFDC13Q8IUB5 93 aa6.95□□□□□ -1.3
PNKP-218ENST00000625299 C8orf87E5RJ46 101 aa6.93□□□□□ -1.3
PNKP-218ENST00000625299 A0A1B0GVX0 72 aa6.92□□□□□ -1.3
PNKP-218ENST00000625299 TRACP01848 142 aa6.91□□□□□ -1.3
PNKP-218ENST00000625299 KRTAP20-1Q3LI63 56 aa6.91□□□□□ -1.3
PNKP-218ENST00000625299 A0A1B0GX51 115 aa6.9□□□□□ -1.3
PNKP-218ENST00000625299 CCKP06307 115 aa6.9□□□□□ -1.3
PNKP-218ENST00000625299 A0A0B4J2C4 111 aa6.88□□□□□ -1.31
PNKP-218ENST00000625299 SMIM6P0DI80 62 aa6.87□□□□□ -1.31
PNKP-218ENST00000625299 LYRM7Q5U5X0 104 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms