RNA–Protein interactions for RNA: ENST00000621967.4

FAM3A-222, Transcript of family with sequence similarity 3 member A, human

TSL 2

Gene FAM3A, Length 1,901 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
FAM3A-222	ENST00000621967	REG3G	Q6UW15	175 aa		11.03	□□□□□ -0.64
FAM3A-222	ENST00000621967	RYR3	Q15413	4870 aa		11.02	□□□□□ -0.64
FAM3A-222	ENST00000621967		Q8NBF4	154 aa		11.02	□□□□□ -0.65
FAM3A-222	ENST00000621967	OXT	P01178	125 aa		11.01	□□□□□ -0.65
FAM3A-222	ENST00000621967	CNBP	P62633	177 aa	Known RBP	11.01	□□□□□ -0.65
FAM3A-222	ENST00000621967	SPRR4	Q96PI1	79 aa		11.01	□□□□□ -0.65
FAM3A-222	ENST00000621967	UBE2B	P63146	152 aa		11	□□□□□ -0.65
FAM3A-222	ENST00000621967	FAM236D	A0A1B0GTK5	79 aa		10.99	□□□□□ -0.65
FAM3A-222	ENST00000621967	LRCOL1	A6NCL2	159 aa		10.99	□□□□□ -0.65
FAM3A-222	ENST00000621967	C16orf90	A8MZG2	172 aa		10.99	□□□□□ -0.65
FAM3A-222	ENST00000621967	FAM236C	P0DP71	79 aa		10.99	□□□□□ -0.65
FAM3A-222	ENST00000621967		A0A087WTM6	91 aa		10.98	□□□□□ -0.65
FAM3A-222	ENST00000621967		A0A096LNI7	61 aa		10.98	□□□□□ -0.65
FAM3A-222	ENST00000621967	C14orf177	Q52M58	125 aa		10.98	□□□□□ -0.65
FAM3A-222	ENST00000621967	SMIM29	Q86T20	159 aa		10.97	□□□□□ -0.65
FAM3A-222	ENST00000621967	SNURF	Q9Y675	71 aa		10.97	□□□□□ -0.65
FAM3A-222	ENST00000621967	FAT2	Q9NYQ8	4349 aa		10.97	□□□□□ -0.65
FAM3A-222	ENST00000621967	LINC00336	Q6ZUF6	198 aa		10.96	□□□□□ -0.65
FAM3A-222	ENST00000621967	OCR1	Q9BZK8	76 aa		10.96	□□□□□ -0.65
FAM3A-222	ENST00000621967	NDUFC1	O43677	76 aa		10.94	□□□□□ -0.66
FAM3A-222	ENST00000621967	IGLV2-33	A0A075B6J2	118 aa	Predicted RBP	10.94	□□□□□ -0.66
FAM3A-222	ENST00000621967		A0A1W2PNN7	141 aa		10.94	□□□□□ -0.66
FAM3A-222	ENST00000621967	EPM2A	B3EWF7	344 aa		10.92	□□□□□ -0.66
FAM3A-222	ENST00000621967	IGKV2-24	A0A0C4DH68	120 aa		10.92	□□□□□ -0.66
FAM3A-222	ENST00000621967		F8WEM9	126 aa		10.92	□□□□□ -0.66
FAM3A-222	ENST00000621967	TMEM254	Q8TBM7	123 aa		10.92	□□□□□ -0.66
FAM3A-222	ENST00000621967	IGLV8-61	A0A075B6I0	122 aa		10.89	□□□□□ -0.67
FAM3A-222	ENST00000621967	SERP1	Q9Y6X1	66 aa		10.89	□□□□□ -0.67
FAM3A-222	ENST00000621967	DNAH11	Q96DT5	4516 aa		10.88	□□□□□ -0.67
FAM3A-222	ENST00000621967	DSCR10	P59022	87 aa		10.88	□□□□□ -0.67
FAM3A-222	ENST00000621967	PRLH	P81277	87 aa		10.88	□□□□□ -0.67
FAM3A-222	ENST00000621967	IGFL1	Q6UW32	110 aa		10.87	□□□□□ -0.67
FAM3A-222	ENST00000621967		A0A0U1RQV1	116 aa		10.86	□□□□□ -0.67
FAM3A-222	ENST00000621967	PKIG	Q9Y2B9	76 aa		10.86	□□□□□ -0.67
FAM3A-222	ENST00000621967	HECTD4	Q9Y4D8	3996 aa		10.85	□□□□□ -0.67
FAM3A-222	ENST00000621967	PKD1	P98161	4303 aa		10.85	□□□□□ -0.67
FAM3A-222	ENST00000621967	IGLV5-52	A0A0A0MRZ9	124 aa		10.85	□□□□□ -0.67
FAM3A-222	ENST00000621967	ATP5E	P56381	51 aa	Predicted RBP	10.84	□□□□□ -0.67
FAM3A-222	ENST00000621967		H0Y9J4	135 aa		10.83	□□□□□ -0.68
FAM3A-222	ENST00000621967	KRTAP10-2	P60368	255 aa		10.83	□□□□□ -0.68
FAM3A-222	ENST00000621967		Q5XG85	94 aa		10.83	□□□□□ -0.68
FAM3A-222	ENST00000621967	HIGD2A	Q9BW72	106 aa		10.83	□□□□□ -0.68
FAM3A-222	ENST00000621967		K7EQZ3	153 aa		10.82	□□□□□ -0.68
FAM3A-222	ENST00000621967	KRTAP11-1	Q8IUC1	163 aa		10.82	□□□□□ -0.68
FAM3A-222	ENST00000621967	CHTF8	P0CG12	524 aa		10.82	□□□□□ -0.68
FAM3A-222	ENST00000621967	DNAH5	Q8TE73	4624 aa		10.81	□□□□□ -0.68
FAM3A-222	ENST00000621967		A0A0G2JQZ4	141 aa		10.81	□□□□□ -0.68
FAM3A-222	ENST00000621967	PHF5A	Q7RTV0	110 aa	Known RBP	10.81	□□□□□ -0.68
FAM3A-222	ENST00000621967	C9orf163	Q8N9P6	203 aa		10.81	□□□□□ -0.68
FAM3A-222	ENST00000621967	SPRR1B	P22528	89 aa		10.8	□□□□□ -0.68
FAM3A-222	ENST00000621967		A0A1B0GVY2	172 aa		10.79	□□□□□ -0.68
FAM3A-222	ENST00000621967	FAM30A	Q9NZY2	134 aa		10.78	□□□□□ -0.68
FAM3A-222	ENST00000621967	UBE2A	P49459	152 aa		10.77	□□□□□ -0.69
FAM3A-222	ENST00000621967	LINC00474	Q9P2X8	69 aa		10.76	□□□□□ -0.69
FAM3A-222	ENST00000621967	PKHD1	P08F94	4074 aa		10.76	□□□□□ -0.69
FAM3A-222	ENST00000621967		A0A087WSZ3	146 aa		10.75	□□□□□ -0.69
FAM3A-222	ENST00000621967	HCG22	E2RYF7	251 aa		10.74	□□□□□ -0.69
FAM3A-222	ENST00000621967	C4orf26	Q17RF5	130 aa		10.74	□□□□□ -0.69
FAM3A-222	ENST00000621967	C5orf47	Q569G3	176 aa		10.73	□□□□□ -0.69
FAM3A-222	ENST00000621967	KRTAP13-1	Q8IUC0	172 aa		10.7	□□□□□ -0.7
FAM3A-222	ENST00000621967	ZCCHC13	Q8WW36	166 aa	Known RBP	10.7	□□□□□ -0.7
FAM3A-222	ENST00000621967	SMIM26	A0A096LP01	95 aa		10.69	□□□□□ -0.7
FAM3A-222	ENST00000621967	PANO1	I0J062	215 aa		10.68	□□□□□ -0.7
FAM3A-222	ENST00000621967	KRTAP10-1	P60331	282 aa		10.68	□□□□□ -0.7
FAM3A-222	ENST00000621967	DEFB116	Q30KQ4	102 aa		10.68	□□□□□ -0.7
FAM3A-222	ENST00000621967	LRP1B	Q9NZR2	4599 aa		10.67	□□□□□ -0.7
FAM3A-222	ENST00000621967	SRRM2	Q9UQ35	2752 aa	Known RBP	10.67	□□□□□ -0.7
FAM3A-222	ENST00000621967	DYNC1H1	Q14204	4646 aa	Known RBP	10.67	□□□□□ -0.7
FAM3A-222	ENST00000621967	HRCT1	Q6UXD1	115 aa		10.66	□□□□□ -0.7
FAM3A-222	ENST00000621967	FP248	Q71RG6	208 aa	Predicted RBP	10.66	□□□□□ -0.7
FAM3A-222	ENST00000621967	AFDN-AS1	Q9Y6Z5	254 aa	Predicted RBP	10.64	□□□□□ -0.71
FAM3A-222	ENST00000621967	SPACA4	Q8TDM5	124 aa		10.64	□□□□□ -0.71
FAM3A-222	ENST00000621967	DNAH8	Q96JB1	4490 aa		10.64	□□□□□ -0.71
FAM3A-222	ENST00000621967	KRTAP29-1	A8MX34	341 aa	Predicted RBP	10.63	□□□□□ -0.71
FAM3A-222	ENST00000621967	LINC00472	Q9H8W2	130 aa		10.63	□□□□□ -0.71
FAM3A-222	ENST00000621967	EPPK1	P58107	5090 aa	Known RBP	10.63	□□□□□ -0.71
FAM3A-222	ENST00000621967	RPL37A	P61513	92 aa	Known RBP	10.62	□□□□□ -0.71
FAM3A-222	ENST00000621967	WFDC13	Q8IUB5	93 aa		10.61	□□□□□ -0.71
FAM3A-222	ENST00000621967	PRR15	Q8IV56	129 aa		10.6	□□□□□ -0.71
FAM3A-222	ENST00000621967		Q6ZSA8	131 aa		10.59	□□□□□ -0.71
FAM3A-222	ENST00000621967		A8MWP4	228 aa		10.58	□□□□□ -0.72
FAM3A-222	ENST00000621967	FAM229B	Q4G0N7	80 aa		10.56	□□□□□ -0.72
FAM3A-222	ENST00000621967	CASC2	Q6XLA1	102 aa		10.54	□□□□□ -0.72
FAM3A-222	ENST00000621967	LINC00483	Q53H64	154 aa		10.54	□□□□□ -0.72
FAM3A-222	ENST00000621967	CIRBP-AS1	Q8TBR5	109 aa		10.54	□□□□□ -0.72
FAM3A-222	ENST00000621967	PLAC8	Q9NZF1	115 aa		10.54	□□□□□ -0.72
FAM3A-222	ENST00000621967	APOB	P04114	4563 aa	Known RBP	10.54	□□□□□ -0.72
FAM3A-222	ENST00000621967	hDV103S1	A0JD37	113 aa		10.52	□□□□□ -0.73
FAM3A-222	ENST00000621967	MP68	P56378	58 aa		10.52	□□□□□ -0.73
FAM3A-222	ENST00000621967	NDUFB1	O75438	58 aa		10.5	□□□□□ -0.73
FAM3A-222	ENST00000621967	CYP4F30P	Q9H0H9	118 aa		10.5	□□□□□ -0.73
FAM3A-222	ENST00000621967	TRAV22	A0A0B4J277	110 aa		10.48	□□□□□ -0.73
FAM3A-222	ENST00000621967		Q96NJ1	140 aa		10.48	□□□□□ -0.73
FAM3A-222	ENST00000621967	MMP24-AS1	A0A0U1RRL7	71 aa		10.48	□□□□□ -0.73
FAM3A-222	ENST00000621967		H3BPC8	53 aa		10.48	□□□□□ -0.73
FAM3A-222	ENST00000621967	IGLV9-49	A0A0B4J1Y8	123 aa		10.47	□□□□□ -0.73
FAM3A-222	ENST00000621967	C1orf64	Q8NEQ6	169 aa		10.46	□□□□□ -0.73
FAM3A-222	ENST00000621967	ZNF706	Q9Y5V0	76 aa	Predicted RBP	10.46	□□□□□ -0.73
FAM3A-222	ENST00000621967	CDK2AP2	O75956	126 aa		10.45	□□□□□ -0.74
FAM3A-222	ENST00000621967	LINC00208	Q96KT6	92 aa		10.45	□□□□□ -0.74

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