RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 LINC00208Q96KT6 92 aa6.98□□□□□ -1.29
UPF3A-212ENST00000619079 Q8NAQ8 132 aa6.97□□□□□ -1.29
UPF3A-212ENST00000619079 PLA2G2DQ9UNK4 145 aa6.97□□□□□ -1.29
UPF3A-212ENST00000619079 LINC00588Q9Y4M8 146 aa6.97□□□□□ -1.29
UPF3A-212ENST00000619079 Q8N9P0 234 aaPredicted RBP6.96□□□□□ -1.3
UPF3A-212ENST00000619079 NBEAL2Q6ZNJ1 2754 aa6.96□□□□□ -1.3
UPF3A-212ENST00000619079 KRTAP4-16G5E9R7 235 aaPredicted RBP6.96□□□□□ -1.3
UPF3A-212ENST00000619079 SPRR1AP35321 89 aa6.96□□□□□ -1.3
UPF3A-212ENST00000619079 ATP11AUNQ6ZP68 121 aa6.96□□□□□ -1.3
UPF3A-212ENST00000619079 RETNQ9HD89 108 aa6.96□□□□□ -1.3
UPF3A-212ENST00000619079 SERTAD4-AS1Q5TG53 156 aa6.95□□□□□ -1.3
UPF3A-212ENST00000619079 NDUFS5O43920 106 aa6.94□□□□□ -1.3
UPF3A-212ENST00000619079 IGLV5-37A0A075B6J1 123 aa6.93□□□□□ -1.3
UPF3A-212ENST00000619079 C16orf90A8MZG2 172 aa6.93□□□□□ -1.3
UPF3A-212ENST00000619079 PRR15LQ9BU68 103 aa6.93□□□□□ -1.3
UPF3A-212ENST00000619079 IGLV1-50A0A075B6I6 118 aa6.93□□□□□ -1.3
UPF3A-212ENST00000619079 TLX1NBP0CAT3 122 aa6.93□□□□□ -1.3
UPF3A-212ENST00000619079 Q75L30 129 aa6.93□□□□□ -1.3
UPF3A-212ENST00000619079 WFDC10BQ8IUB3 73 aa6.93□□□□□ -1.3
UPF3A-212ENST00000619079 H3BNG1 76 aa6.92□□□□□ -1.3
UPF3A-212ENST00000619079 WFDC13Q8IUB5 93 aa6.92□□□□□ -1.3
UPF3A-212ENST00000619079 IGKV2D-24A0A075B6R9 120 aa6.92□□□□□ -1.3
UPF3A-212ENST00000619079 H0Y9P7 68 aa6.91□□□□□ -1.3
UPF3A-212ENST00000619079 LOC101927531A0A1B0GV80 90 aa6.91□□□□□ -1.3
UPF3A-212ENST00000619079 C4orf48Q5BLP8 95 aa6.91□□□□□ -1.3
UPF3A-212ENST00000619079 LINC00476Q8WZB0 136 aa6.91□□□□□ -1.3
UPF3A-212ENST00000619079 RPL37AP8A6NKH3 93 aa6.9□□□□□ -1.3
UPF3A-212ENST00000619079 A8MU10 97 aa6.9□□□□□ -1.3
UPF3A-212ENST00000619079 DNAH9Q9NYC9 4486 aa6.9□□□□□ -1.3
UPF3A-212ENST00000619079 SPTSSBQ8NFR3 76 aa6.9□□□□□ -1.31
UPF3A-212ENST00000619079 KRTAP29-1A8MX34 341 aaPredicted RBP6.89□□□□□ -1.31
UPF3A-212ENST00000619079 PHF5AQ7RTV0 110 aaKnown RBP6.89□□□□□ -1.31
UPF3A-212ENST00000619079 RBM12B-AS1Q9P1G2 102 aa6.89□□□□□ -1.31
UPF3A-212ENST00000619079 A6NED7 52 aa6.89□□□□□ -1.31
UPF3A-212ENST00000619079 HUWE1Q7Z6Z7 4374 aaKnown RBP6.89□□□□□ -1.31
UPF3A-212ENST00000619079 CASC2Q6XLA1 102 aa6.88□□□□□ -1.31
UPF3A-212ENST00000619079 COL7A1Q02388 2944 aa6.87□□□□□ -1.31
UPF3A-212ENST00000619079 C9orf163Q8N9P6 203 aa6.87□□□□□ -1.31
UPF3A-212ENST00000619079 TGP01266 2768 aa6.87□□□□□ -1.31
UPF3A-212ENST00000619079 IGFL1Q6UW32 110 aa6.87□□□□□ -1.31
UPF3A-212ENST00000619079 CDC42SE1Q9NRR8 79 aa6.87□□□□□ -1.31
UPF3A-212ENST00000619079 IGLV8-61A0A075B6I0 122 aa6.86□□□□□ -1.31
UPF3A-212ENST00000619079 DEFB116Q30KQ4 102 aa6.86□□□□□ -1.31
UPF3A-212ENST00000619079 LINC01556Q5JQF7 62 aa6.86□□□□□ -1.31
UPF3A-212ENST00000619079 LCA10Q71F78 164 aa6.86□□□□□ -1.31
UPF3A-212ENST00000619079 A6NN06 94 aa6.86□□□□□ -1.31
UPF3A-212ENST00000619079 TENM3Q9P273 2699 aa6.85□□□□□ -1.31
UPF3A-212ENST00000619079 A0A087WSZ3 146 aa6.85□□□□□ -1.31
UPF3A-212ENST00000619079 COA5Q86WW8 74 aa6.85□□□□□ -1.31
UPF3A-212ENST00000619079 REG3GQ6UW15 175 aa6.84□□□□□ -1.32
UPF3A-212ENST00000619079 IGLV7-46A0A075B6I9 117 aa6.83□□□□□ -1.32
UPF3A-212ENST00000619079 FAM168BA1KXE4 195 aa6.83□□□□□ -1.32
UPF3A-212ENST00000619079 STAB2Q8WWQ8 2551 aa6.82□□□□□ -1.32
UPF3A-212ENST00000619079 A8MWP4 228 aa6.82□□□□□ -1.32
UPF3A-212ENST00000619079 C7orf65Q6ZTY9 151 aa6.82□□□□□ -1.32
UPF3A-212ENST00000619079 C11orf45Q8TAV5 145 aa6.82□□□□□ -1.32
UPF3A-212ENST00000619079 LINC01558Q9Y6Z2 57 aa6.8□□□□□ -1.32
UPF3A-212ENST00000619079 RPL37AP61513 92 aaKnown RBP6.8□□□□□ -1.32
UPF3A-212ENST00000619079 CNBPP62633 177 aaKnown RBP6.8□□□□□ -1.32
UPF3A-212ENST00000619079 WWC2-AS2Q96NR7 200 aa6.8□□□□□ -1.32
UPF3A-212ENST00000619079 KRTAP7-1Q8IUC3 87 aa6.79□□□□□ -1.32
UPF3A-212ENST00000619079 A0A0G2JQZ4 141 aa6.78□□□□□ -1.32
UPF3A-212ENST00000619079 A0A1W2PNN7 141 aa6.78□□□□□ -1.32
UPF3A-212ENST00000619079 DNAH10OSP0CZ25 163 aa6.77□□□□□ -1.33
UPF3A-212ENST00000619079 PLAC8Q9NZF1 115 aa6.77□□□□□ -1.33
UPF3A-212ENST00000619079 LINC00472Q9H8W2 130 aa6.76□□□□□ -1.33
UPF3A-212ENST00000619079 TP53AIP1Q9HCN2 124 aa6.76□□□□□ -1.33
UPF3A-212ENST00000619079 DEFB131BA0A096LNP1 70 aa6.75□□□□□ -1.33
UPF3A-212ENST00000619079 MOBPQ13875 183 aa6.75□□□□□ -1.33
UPF3A-212ENST00000619079 MMP24-AS1A0A0U1RRL7 71 aa6.72□□□□□ -1.33
UPF3A-212ENST00000619079 NUPR2A6NF83 97 aa6.72□□□□□ -1.33
UPF3A-212ENST00000619079 SPAG11AQ6PDA7 123 aa6.72□□□□□ -1.33
UPF3A-212ENST00000619079 DNAH7Q8WXX0 4024 aa6.72□□□□□ -1.33
UPF3A-212ENST00000619079 H0Y9J4 135 aa6.71□□□□□ -1.33
UPF3A-212ENST00000619079 SPRR1BP22528 89 aa6.71□□□□□ -1.33
UPF3A-212ENST00000619079 PRLHP81277 87 aa6.71□□□□□ -1.33
UPF3A-212ENST00000619079 PCOTHQ58A44 107 aa6.7□□□□□ -1.34
UPF3A-212ENST00000619079 CASC10Q5T4H9 136 aa6.69□□□□□ -1.34
UPF3A-212ENST00000619079 CSMD3Q7Z407 3707 aa6.69□□□□□ -1.34
UPF3A-212ENST00000619079 STARD9Q9P2P6 4700 aa6.69□□□□□ -1.34
UPF3A-212ENST00000619079 Q6ZR54 194 aa6.69□□□□□ -1.34
UPF3A-212ENST00000619079 ASB16-AS1Q495Z4 193 aa6.67□□□□□ -1.34
UPF3A-212ENST00000619079 SPINK7P58062 85 aa6.67□□□□□ -1.34
UPF3A-212ENST00000619079 IGKV2-24A0A0C4DH68 120 aa6.65□□□□□ -1.34
UPF3A-212ENST00000619079 HRES1P13985 223 aa6.65□□□□□ -1.34
UPF3A-212ENST00000619079 PLECQ15149 4684 aaKnown RBP6.63□□□□□ -1.35
UPF3A-212ENST00000619079 LYSTQ99698 3801 aa6.63□□□□□ -1.35
UPF3A-212ENST00000619079 TENM2Q9NT68 2774 aa6.63□□□□□ -1.35
UPF3A-212ENST00000619079 APLNQ9ULZ1 77 aa6.62□□□□□ -1.35
UPF3A-212ENST00000619079 A0A096LNI7 61 aa6.62□□□□□ -1.35
UPF3A-212ENST00000619079 C8orf87E5RJ46 101 aa6.62□□□□□ -1.35
UPF3A-212ENST00000619079 UBE2DNLQ8IWF7 75 aa6.62□□□□□ -1.35
UPF3A-212ENST00000619079 C8orf17Q9NRJ1 99 aa6.61□□□□□ -1.35
UPF3A-212ENST00000619079 LY6G6CO95867 125 aa6.6□□□□□ -1.35
UPF3A-212ENST00000619079 LINC00313P59037 77 aa6.6□□□□□ -1.35
UPF3A-212ENST00000619079 DYNC2H1Q8NCM8 4307 aaKnown RBP6.59□□□□□ -1.35
UPF3A-212ENST00000619079 A0A087X002 238 aa6.58□□□□□ -1.36
UPF3A-212ENST00000619079 Q96NJ1 140 aa6.57□□□□□ -1.36
UPF3A-212ENST00000619079 A0A1B0GVX0 72 aa6.56□□□□□ -1.36
UPF3A-212ENST00000619079 PLA2G1BP04054 148 aaKnown RBP6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms