RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 SPACA4Q8TDM5 124 aa7.36□□□□□ -1.23
VRK3-223ENST00000601341 RYR3Q15413 4870 aa7.36□□□□□ -1.23
VRK3-223ENST00000601341 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.36□□□□□ -1.23
VRK3-223ENST00000601341 DNAH11Q96DT5 4516 aa7.35□□□□□ -1.23
VRK3-223ENST00000601341 PANO1I0J062 215 aa7.35□□□□□ -1.23
VRK3-223ENST00000601341 Q9BRP9 147 aa7.35□□□□□ -1.23
VRK3-223ENST00000601341 NREPQ16612 68 aa7.33□□□□□ -1.24
VRK3-223ENST00000601341 J3KT08 172 aa7.33□□□□□ -1.24
VRK3-223ENST00000601341 RPL37AP8A6NKH3 93 aa7.32□□□□□ -1.24
VRK3-223ENST00000601341 REG3GQ6UW15 175 aa7.32□□□□□ -1.24
VRK3-223ENST00000601341 EPM2AB3EWF7 344 aa7.31□□□□□ -1.24
VRK3-223ENST00000601341 ERC2-IT1O76042 136 aa7.31□□□□□ -1.24
VRK3-223ENST00000601341 KLKP1Q107X0 134 aa7.31□□□□□ -1.24
VRK3-223ENST00000601341 SPRR4Q96PI1 79 aa7.31□□□□□ -1.24
VRK3-223ENST00000601341 PLAC8Q9NZF1 115 aa7.31□□□□□ -1.24
VRK3-223ENST00000601341 DNAH5Q8TE73 4624 aa7.3□□□□□ -1.24
VRK3-223ENST00000601341 PKD1P98161 4303 aa7.3□□□□□ -1.24
VRK3-223ENST00000601341 A0A1B0GVY2 172 aa7.3□□□□□ -1.24
VRK3-223ENST00000601341 CYSTM1Q9H1C7 97 aa7.3□□□□□ -1.24
VRK3-223ENST00000601341 KRTAP10-1P60331 282 aa7.29□□□□□ -1.24
VRK3-223ENST00000601341 C1orf137Q5JT78 98 aa7.29□□□□□ -1.24
VRK3-223ENST00000601341 PHF5AQ7RTV0 110 aaKnown RBP7.29□□□□□ -1.24
VRK3-223ENST00000601341 Q8NBF4 154 aa7.29□□□□□ -1.24
VRK3-223ENST00000601341 DEFB105AQ8NG35 78 aa7.29□□□□□ -1.24
VRK3-223ENST00000601341 BPY2O14599 106 aa7.28□□□□□ -1.24
VRK3-223ENST00000601341 UBE2BP63146 152 aa7.28□□□□□ -1.24
VRK3-223ENST00000601341 NDUFC1O43677 76 aa7.28□□□□□ -1.24
VRK3-223ENST00000601341 IGKV4-1P06312 121 aa7.28□□□□□ -1.24
VRK3-223ENST00000601341 Q6ZSA8 131 aa7.28□□□□□ -1.24
VRK3-223ENST00000601341 C20orf197Q8N268 126 aa7.27□□□□□ -1.25
VRK3-223ENST00000601341 FAM30AQ9NZY2 134 aa7.27□□□□□ -1.25
VRK3-223ENST00000601341 A0A1W2PNM2 257 aa7.26□□□□□ -1.25
VRK3-223ENST00000601341 H0Y9J4 135 aa7.26□□□□□ -1.25
VRK3-223ENST00000601341 IGLV8-61A0A075B6I0 122 aa7.25□□□□□ -1.25
VRK3-223ENST00000601341 CIRBP-AS1Q8TBR5 109 aa7.25□□□□□ -1.25
VRK3-223ENST00000601341 F8WEM9 126 aa7.24□□□□□ -1.25
VRK3-223ENST00000601341 H7BZZ5 65 aa7.24□□□□□ -1.25
VRK3-223ENST00000601341 SMIM29Q86T20 159 aa7.24□□□□□ -1.25
VRK3-223ENST00000601341 ST20-AS1Q8NBB2 130 aa7.24□□□□□ -1.25
VRK3-223ENST00000601341 SCXQ7RTU7 201 aa7.23□□□□□ -1.25
VRK3-223ENST00000601341 KRTAP11-1Q8IUC1 163 aa7.23□□□□□ -1.25
VRK3-223ENST00000601341 DNAH8Q96JB1 4490 aa7.22□□□□□ -1.25
VRK3-223ENST00000601341 ATP5EP56381 51 aaPredicted RBP7.21□□□□□ -1.25
VRK3-223ENST00000601341 OCR1Q9BZK8 76 aa7.21□□□□□ -1.25
VRK3-223ENST00000601341 PKHD1P08F94 4074 aa7.21□□□□□ -1.26
VRK3-223ENST00000601341 SPRR1BP22528 89 aa7.2□□□□□ -1.26
VRK3-223ENST00000601341 FAM236DA0A1B0GTK5 79 aa7.2□□□□□ -1.26
VRK3-223ENST00000601341 FAM236CP0DP71 79 aa7.2□□□□□ -1.26
VRK3-223ENST00000601341 LRP1BQ9NZR2 4599 aa7.18□□□□□ -1.26
VRK3-223ENST00000601341 TMEM254Q8TBM7 123 aa7.18□□□□□ -1.26
VRK3-223ENST00000601341 PSORS1C2Q9UIG4 136 aa7.18□□□□□ -1.26
VRK3-223ENST00000601341 BIRC6Q9NR09 4857 aa7.17□□□□□ -1.26
VRK3-223ENST00000601341 UBE2AP49459 152 aa7.17□□□□□ -1.26
VRK3-223ENST00000601341 PRLHP81277 87 aa7.17□□□□□ -1.26
VRK3-223ENST00000601341 Q8N9L7 120 aa7.17□□□□□ -1.26
VRK3-223ENST00000601341 DYNC1H1Q14204 4646 aaKnown RBP7.17□□□□□ -1.26
VRK3-223ENST00000601341 IGFL1Q6UW32 110 aa7.16□□□□□ -1.26
VRK3-223ENST00000601341 SERP1Q9Y6X1 66 aa7.16□□□□□ -1.26
VRK3-223ENST00000601341 DSCR10P59022 87 aa7.15□□□□□ -1.27
VRK3-223ENST00000601341 A0A0U1RQV1 116 aa7.14□□□□□ -1.27
VRK3-223ENST00000601341 HIGD2AQ9BW72 106 aa7.14□□□□□ -1.27
VRK3-223ENST00000601341 KRTAP13-1Q8IUC0 172 aa7.13□□□□□ -1.27
VRK3-223ENST00000601341 SNURFQ9Y675 71 aa7.13□□□□□ -1.27
VRK3-223ENST00000601341 ZNF861PO60384 105 aa7.1□□□□□ -1.27
VRK3-223ENST00000601341 IGLV7-43P04211 117 aa7.1□□□□□ -1.27
VRK3-223ENST00000601341 EPPK1P58107 5090 aaKnown RBP7.1□□□□□ -1.27
VRK3-223ENST00000601341 HCG22E2RYF7 251 aa7.1□□□□□ -1.27
VRK3-223ENST00000601341 K7EQZ3 153 aa7.09□□□□□ -1.27
VRK3-223ENST00000601341 OXTP01178 125 aa7.09□□□□□ -1.27
VRK3-223ENST00000601341 RPL37AP61513 92 aaKnown RBP7.08□□□□□ -1.28
VRK3-223ENST00000601341 C5orf47Q569G3 176 aa7.08□□□□□ -1.28
VRK3-223ENST00000601341 A0A087WSZ3 146 aa7.08□□□□□ -1.28
VRK3-223ENST00000601341 APOBP04114 4563 aaKnown RBP7.07□□□□□ -1.28
VRK3-223ENST00000601341 CDK2AP2O75956 126 aa7.05□□□□□ -1.28
VRK3-223ENST00000601341 SMR3BP02814 79 aaPredicted RBP7.05□□□□□ -1.28
VRK3-223ENST00000601341 ZNF706Q9Y5V0 76 aaPredicted RBP7.05□□□□□ -1.28
VRK3-223ENST00000601341 SMIM26A0A096LP01 95 aa7.04□□□□□ -1.28
VRK3-223ENST00000601341 ZCCHC13Q8WW36 166 aaKnown RBP7.04□□□□□ -1.28
VRK3-223ENST00000601341 LINC00483Q53H64 154 aa7.03□□□□□ -1.28
VRK3-223ENST00000601341 Q5XG85 94 aa7.03□□□□□ -1.28
VRK3-223ENST00000601341 LINC00472Q9H8W2 130 aa7.03□□□□□ -1.28
VRK3-223ENST00000601341 SRRM2Q9UQ35 2752 aaKnown RBP7.03□□□□□ -1.28
VRK3-223ENST00000601341 A8MWP4 228 aa7.03□□□□□ -1.28
VRK3-223ENST00000601341 KRTAP29-1A8MX34 341 aaPredicted RBP7.02□□□□□ -1.29
VRK3-223ENST00000601341 PRR15Q8IV56 129 aa7.02□□□□□ -1.29
VRK3-223ENST00000601341 H3BPC8 53 aa7.01□□□□□ -1.29
VRK3-223ENST00000601341 NDUFB1O75438 58 aa7.01□□□□□ -1.29
VRK3-223ENST00000601341 VPS13BQ7Z7G8 4022 aa7.01□□□□□ -1.29
VRK3-223ENST00000601341 A0A0G2JQZ4 141 aa7□□□□□ -1.29
VRK3-223ENST00000601341 FAM229AH3BQW9 127 aa6.99□□□□□ -1.29
VRK3-223ENST00000601341 FAT1Q14517 4588 aa6.98□□□□□ -1.29
VRK3-223ENST00000601341 PLA2G1BP04054 148 aaKnown RBP6.97□□□□□ -1.29
VRK3-223ENST00000601341 MP68P56378 58 aa6.97□□□□□ -1.29
VRK3-223ENST00000601341 SPINK6Q6UWN8 80 aa6.97□□□□□ -1.29
VRK3-223ENST00000601341 KRTAP10-4P60372 401 aaPredicted RBP6.96□□□□□ -1.3
VRK3-223ENST00000601341 CASC2Q6XLA1 102 aa6.96□□□□□ -1.3
VRK3-223ENST00000601341 CYP4F30PQ9H0H9 118 aa6.95□□□□□ -1.3
VRK3-223ENST00000601341 ANAPC11Q9NYG5 84 aa6.95□□□□□ -1.3
VRK3-223ENST00000601341 RYR1P21817 5038 aa6.94□□□□□ -1.3
VRK3-223ENST00000601341 DEFB116Q30KQ4 102 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms