RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 SMCPP49901 116 aaPredicted RBP9.34□□□□□ -0.91
UPF1-206ENST00000598471 Q5VSD8 79 aa9.34□□□□□ -0.91
UPF1-206ENST00000598471 LAMTOR3Q9UHA4 124 aa9.34□□□□□ -0.91
UPF1-206ENST00000598471 F8WEM9 126 aa9.32□□□□□ -0.92
UPF1-206ENST00000598471 KRTAP10-4P60372 401 aaPredicted RBP9.32□□□□□ -0.92
UPF1-206ENST00000598471 NDUFV3P56181 108 aaKnown RBP9.31□□□□□ -0.92
UPF1-206ENST00000598471 LINC00483Q53H64 154 aa9.31□□□□□ -0.92
UPF1-206ENST00000598471 JMJD7-PLA2G4BH0Y9G9 81 aa9.3□□□□□ -0.92
UPF1-206ENST00000598471 ABCA13Q86UQ4 5058 aa9.3□□□□□ -0.92
UPF1-206ENST00000598471 TEN1Q86WV5 123 aa9.29□□□□□ -0.92
UPF1-206ENST00000598471 VPS13BQ7Z7G8 4022 aa9.29□□□□□ -0.92
UPF1-206ENST00000598471 C3orf22Q8N5N4 141 aa9.28□□□□□ -0.92
UPF1-206ENST00000598471 ETDBQ3ZM63 59 aa9.27□□□□□ -0.93
UPF1-206ENST00000598471 FAM229BQ4G0N7 80 aa9.26□□□□□ -0.93
UPF1-206ENST00000598471 SMIM29Q86T20 159 aa9.26□□□□□ -0.93
UPF1-206ENST00000598471 RBM3P98179 157 aaKnown RBP9.25□□□□□ -0.93
UPF1-206ENST00000598471 A0A1B0GV72 72 aa9.24□□□□□ -0.93
UPF1-206ENST00000598471 PCLOQ9Y6V0 5065 aa9.24□□□□□ -0.93
UPF1-206ENST00000598471 C9orf153Q5TBE3 101 aa9.23□□□□□ -0.93
UPF1-206ENST00000598471 OBSCN-AS1Q96MR7 158 aa9.23□□□□□ -0.93
UPF1-206ENST00000598471 DSCR8Q96T75 97 aa9.23□□□□□ -0.93
UPF1-206ENST00000598471 ANAPC11Q9NYG5 84 aa9.23□□□□□ -0.93
UPF1-206ENST00000598471 IGLV9-49A0A0B4J1Y8 123 aa9.22□□□□□ -0.93
UPF1-206ENST00000598471 CRYGAP11844 174 aa9.22□□□□□ -0.93
UPF1-206ENST00000598471 KRTAP1-4P0C5Y4 121 aa9.21□□□□□ -0.94
UPF1-206ENST00000598471 PDE6GP18545 87 aa9.21□□□□□ -0.94
UPF1-206ENST00000598471 C21orf62-AS1Q17RA5 79 aa9.21□□□□□ -0.94
UPF1-206ENST00000598471 SRRM2Q9UQ35 2752 aaKnown RBP9.21□□□□□ -0.94
UPF1-206ENST00000598471 IGLV8-61A0A075B6I0 122 aa9.2□□□□□ -0.94
UPF1-206ENST00000598471 Q6JHZ5 121 aa9.2□□□□□ -0.94
UPF1-206ENST00000598471 Q8NBF4 154 aa9.2□□□□□ -0.94
UPF1-206ENST00000598471 C14orf132Q9NPU4 83 aa9.2□□□□□ -0.94
UPF1-206ENST00000598471 MOBPQ13875 183 aa9.19□□□□□ -0.94
UPF1-206ENST00000598471 LOC110117498A0A087WWA1 95 aa9.18□□□□□ -0.94
UPF1-206ENST00000598471 TRBV7-4A0A0J9YYF1 115 aa9.17□□□□□ -0.94
UPF1-206ENST00000598471 A0A087X002 238 aa9.16□□□□□ -0.94
UPF1-206ENST00000598471 SSBP3-AS1Q7Z2R9 100 aa9.15□□□□□ -0.94
UPF1-206ENST00000598471 J3QR89 54 aa9.14□□□□□ -0.95
UPF1-206ENST00000598471 IGFL1Q6UW32 110 aa9.14□□□□□ -0.95
UPF1-206ENST00000598471 Q6ZQT0 140 aa9.14□□□□□ -0.95
UPF1-206ENST00000598471 PKHD1L1Q86WI1 4243 aa9.13□□□□□ -0.95
UPF1-206ENST00000598471 CCKP06307 115 aa9.12□□□□□ -0.95
UPF1-206ENST00000598471 KRTAP13-2Q52LG2 175 aa9.12□□□□□ -0.95
UPF1-206ENST00000598471 TYMSOSQ8TAI1 123 aa9.12□□□□□ -0.95
UPF1-206ENST00000598471 VPS25Q9BRG1 176 aa9.12□□□□□ -0.95
UPF1-206ENST00000598471 PRR26Q8N8Z3 221 aa9.11□□□□□ -0.95
UPF1-206ENST00000598471 A0A1B0GW54 56 aa9.07□□□□□ -0.96
UPF1-206ENST00000598471 A0A1W2PNM2 257 aa9.07□□□□□ -0.96
UPF1-206ENST00000598471 K7ERU9 68 aa9.07□□□□□ -0.96
UPF1-206ENST00000598471 Q6Q795 121 aa9.07□□□□□ -0.96
UPF1-206ENST00000598471 A0A0G2JQZ4 141 aa9.06□□□□□ -0.96
UPF1-206ENST00000598471 ACYP1P07311 99 aa9.05□□□□□ -0.96
UPF1-206ENST00000598471 CD164Q04900 197 aa9.05□□□□□ -0.96
UPF1-206ENST00000598471 C4orf48Q5BLP8 95 aa9.05□□□□□ -0.96
UPF1-206ENST00000598471 FAM240AA0A1B0GVK7 77 aa9.04□□□□□ -0.96
UPF1-206ENST00000598471 HRCT1Q6UXD1 115 aa9.03□□□□□ -0.96
UPF1-206ENST00000598471 FLG2Q5D862 2391 aaPredicted RBP9.02□□□□□ -0.96
UPF1-206ENST00000598471 TRBV7-7A0A0K0K1E9 115 aa9.02□□□□□ -0.97
UPF1-206ENST00000598471 SPAG11AQ6PDA7 123 aa9.02□□□□□ -0.97
UPF1-206ENST00000598471 LINC00304Q8N9R0 145 aa9.02□□□□□ -0.97
UPF1-206ENST00000598471 OXTP01178 125 aa9.01□□□□□ -0.97
UPF1-206ENST00000598471 A0A087WSZ3 146 aa8.99□□□□□ -0.97
UPF1-206ENST00000598471 SS18L2Q9UHA2 77 aa8.99□□□□□ -0.97
UPF1-206ENST00000598471 SPINK1P00995 79 aa8.98□□□□□ -0.97
UPF1-206ENST00000598471 KRTAP10-8P60410 259 aa8.98□□□□□ -0.97
UPF1-206ENST00000598471 FAT3Q8TDW7 4589 aa8.98□□□□□ -0.97
UPF1-206ENST00000598471 LRP1Q07954 4544 aaKnown RBP8.97□□□□□ -0.97
UPF1-206ENST00000598471 LIMD2Q9BT23 127 aa8.97□□□□□ -0.97
UPF1-206ENST00000598471 UBL5Q9BZL1 73 aa8.97□□□□□ -0.97
UPF1-206ENST00000598471 MYCBP2O75592 4640 aa8.97□□□□□ -0.97
UPF1-206ENST00000598471 LINC00846Q9NV44 126 aa8.96□□□□□ -0.98
UPF1-206ENST00000598471 KRTAP29-1A8MX34 341 aaPredicted RBP8.94□□□□□ -0.98
UPF1-206ENST00000598471 RPS29P62273 56 aaKnown RBP8.94□□□□□ -0.98
UPF1-206ENST00000598471 NREPQ16612 68 aa8.94□□□□□ -0.98
UPF1-206ENST00000598471 Q5XG85 94 aa8.92□□□□□ -0.98
UPF1-206ENST00000598471 Q6ZVQ6 151 aa8.91□□□□□ -0.98
UPF1-206ENST00000598471 J3QL48 77 aa8.89□□□□□ -0.99
UPF1-206ENST00000598471 MT1HL1P0DM35 61 aa8.89□□□□□ -0.99
UPF1-206ENST00000598471 ASB16-AS1Q495Z4 193 aa8.89□□□□□ -0.99
UPF1-206ENST00000598471 LINC00643Q86TS7 51 aa8.86□□□□□ -0.99
UPF1-206ENST00000598471 CDIP1Q9H305 208 aa8.85□□□□□ -0.99
UPF1-206ENST00000598471 J3KT08 172 aa8.84□□□□□ -0.99
UPF1-206ENST00000598471 BPY2O14599 106 aa8.84□□□□□ -0.99
UPF1-206ENST00000598471 ATP5EP2Q5VTU8 51 aa8.84□□□□□ -0.99
UPF1-206ENST00000598471 SIGMAR1Q99720 223 aa8.83□□□□□ -1
UPF1-206ENST00000598471 LINC00472Q9H8W2 130 aa8.83□□□□□ -1
UPF1-206ENST00000598471 TNXBP22105 4242 aa8.83□□□□□ -1
UPF1-206ENST00000598471 HERC1Q15751 4861 aa8.83□□□□□ -1
UPF1-206ENST00000598471 IGKV4-1P06312 121 aa8.8□□□□□ -1
UPF1-206ENST00000598471 CXCL6P80162 114 aa8.8□□□□□ -1
UPF1-206ENST00000598471 C1orf195Q5TG92 126 aa8.8□□□□□ -1
UPF1-206ENST00000598471 Q96NJ1 140 aa8.8□□□□□ -1
UPF1-206ENST00000598471 DEFB116Q30KQ4 102 aa8.79□□□□□ -1
UPF1-206ENST00000598471 IGKV3D-7A0A0C4DH55 119 aa8.77□□□□□ -1.01
UPF1-206ENST00000598471 NDUFB1O75438 58 aa8.76□□□□□ -1.01
UPF1-206ENST00000598471 A8MWP4 228 aa8.74□□□□□ -1.01
UPF1-206ENST00000598471 DSCR10P59022 87 aa8.73□□□□□ -1.01
UPF1-206ENST00000598471 DMBT1Q9UGM3 2413 aaPredicted RBP8.72□□□□□ -1.01
UPF1-206ENST00000598471 RETNLBQ9BQ08 111 aa8.72□□□□□ -1.01
UPF1-206ENST00000598471 FP248Q71RG6 208 aaPredicted RBP8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 868.2 ms