RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 IGFL1Q6UW32 110 aa5.05□□□□□ -1.6
TRIM28-210ENST00000597618 CLEC2BQ92478 149 aa5.05□□□□□ -1.6
TRIM28-210ENST00000597618 A8MUU9 505 aa5.04□□□□□ -1.6
TRIM28-210ENST00000597618 SERF1AO75920 110 aa5.04□□□□□ -1.6
TRIM28-210ENST00000597618 COLCA2A8K830 154 aa5.03□□□□□ -1.6
TRIM28-210ENST00000597618 LST1O00453 97 aa5.02□□□□□ -1.61
TRIM28-210ENST00000597618 FABP4P15090 132 aa5.02□□□□□ -1.61
TRIM28-210ENST00000597618 RBM12B-AS1Q9P1G2 102 aa5.02□□□□□ -1.61
TRIM28-210ENST00000597618 TRAV13-2A0A0B4J235 113 aa5.01□□□□□ -1.61
TRIM28-210ENST00000597618 A6NDN8 102 aa5.01□□□□□ -1.61
TRIM28-210ENST00000597618 A6NJY4 79 aa5.01□□□□□ -1.61
TRIM28-210ENST00000597618 ZNF815PA8K554 130 aa5.01□□□□□ -1.61
TRIM28-210ENST00000597618 SLC7A5P1Q8MH63 180 aa5.01□□□□□ -1.61
TRIM28-210ENST00000597618 COPS9Q8WXC6 57 aa5□□□□□ -1.61
TRIM28-210ENST00000597618 MPLKIPQ8TAP9 179 aa4.98□□□□□ -1.61
TRIM28-210ENST00000597618 OCIAD2Q56VL3 154 aa4.97□□□□□ -1.61
TRIM28-210ENST00000597618 SS18L2Q9UHA2 77 aa4.97□□□□□ -1.61
TRIM28-210ENST00000597618 MUC12Q9UKN1 5478 aa4.97□□□□□ -1.61
TRIM28-210ENST00000597618 IFITM1P13164 125 aa4.96□□□□□ -1.62
TRIM28-210ENST00000597618 HRES1P13985 223 aa4.96□□□□□ -1.62
TRIM28-210ENST00000597618 Q6ZQY7 126 aa4.96□□□□□ -1.62
TRIM28-210ENST00000597618 SMIM11BQ8TCY0 68 aa4.96□□□□□ -1.62
TRIM28-210ENST00000597618 TTTY13Q9BZ97 58 aa4.96□□□□□ -1.62
TRIM28-210ENST00000597618 SYS1-DBNDD2H3BUS1 97 aa4.95□□□□□ -1.62
TRIM28-210ENST00000597618 HIST1H2BKO60814 126 aa4.95□□□□□ -1.62
TRIM28-210ENST00000597618 HIST1H2BJP06899 126 aa4.95□□□□□ -1.62
TRIM28-210ENST00000597618 HIST1H2BOP23527 126 aa4.95□□□□□ -1.62
TRIM28-210ENST00000597618 HIST1H2BBP33778 126 aa4.95□□□□□ -1.62
TRIM28-210ENST00000597618 HIST1H2BDP58876 126 aa4.95□□□□□ -1.62
TRIM28-210ENST00000597618 HIST1H2BCP62807 126 aa4.95□□□□□ -1.62
TRIM28-210ENST00000597618 VAMP3Q15836 100 aa4.95□□□□□ -1.62
TRIM28-210ENST00000597618 HIST2H2BEQ16778 126 aa4.95□□□□□ -1.62
TRIM28-210ENST00000597618 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.95□□□□□ -1.62
TRIM28-210ENST00000597618 SCGB1D4Q6XE38 83 aa4.95□□□□□ -1.62
TRIM28-210ENST00000597618 HIST1H2BHQ93079 126 aa4.95□□□□□ -1.62
TRIM28-210ENST00000597618 HIST1H2BNQ99877 126 aa4.95□□□□□ -1.62
TRIM28-210ENST00000597618 HIST1H2BMQ99879 126 aa4.95□□□□□ -1.62
TRIM28-210ENST00000597618 KRTAP16-1A8MUX0 517 aa4.94□□□□□ -1.62
TRIM28-210ENST00000597618 LINC01545Q5VT33 79 aa4.94□□□□□ -1.62
TRIM28-210ENST00000597618 LINC00575Q6W349 94 aa4.94□□□□□ -1.62
TRIM28-210ENST00000597618 hADV29S1A0JD25 119 aa4.93□□□□□ -1.62
TRIM28-210ENST00000597618 SCGB1D1O95968 90 aa4.93□□□□□ -1.62
TRIM28-210ENST00000597618 DSCR10P59022 87 aa4.93□□□□□ -1.62
TRIM28-210ENST00000597618 PET117Q6UWS5 81 aa4.93□□□□□ -1.62
TRIM28-210ENST00000597618 Q6ZVH6 145 aa4.93□□□□□ -1.62
TRIM28-210ENST00000597618 MTURNQ8N3F0 131 aa4.92□□□□□ -1.62
TRIM28-210ENST00000597618 PPDPFLQ8WWR9 84 aa4.92□□□□□ -1.62
TRIM28-210ENST00000597618 H3BUT2 72 aa4.91□□□□□ -1.62
TRIM28-210ENST00000597618 COA6Q5JTJ3 125 aaKnown RBP4.91□□□□□ -1.62
TRIM28-210ENST00000597618 MUSTN1Q8IVN3 82 aa4.91□□□□□ -1.62
TRIM28-210ENST00000597618 KRTAP20-1Q3LI63 56 aa4.9□□□□□ -1.63
TRIM28-210ENST00000597618 ANKRD39Q53RE8 183 aa4.9□□□□□ -1.63
TRIM28-210ENST00000597618 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.9□□□□□ -1.63
TRIM28-210ENST00000597618 SNHG12Q9BXW3 62 aa4.9□□□□□ -1.63
TRIM28-210ENST00000597618 A8MWP4 228 aa4.89□□□□□ -1.63
TRIM28-210ENST00000597618 C3orf79P0CE67 100 aa4.89□□□□□ -1.63
TRIM28-210ENST00000597618 NOTCH2NLQ7Z3S9 236 aa4.89□□□□□ -1.63
TRIM28-210ENST00000597618 TEN1Q86WV5 123 aa4.88□□□□□ -1.63
TRIM28-210ENST00000597618 SIGMAR1Q99720 223 aa4.88□□□□□ -1.63
TRIM28-210ENST00000597618 A0A087WSZ3 146 aa4.87□□□□□ -1.63
TRIM28-210ENST00000597618 SMCPP49901 116 aaPredicted RBP4.87□□□□□ -1.63
TRIM28-210ENST00000597618 LINC00313P59037 77 aa4.87□□□□□ -1.63
TRIM28-210ENST00000597618 Q8N9P0 234 aaPredicted RBP4.86□□□□□ -1.63
TRIM28-210ENST00000597618 KRTDAPP60985 99 aa4.85□□□□□ -1.63
TRIM28-210ENST00000597618 BVES-AS1Q5T3Y7 98 aa4.82□□□□□ -1.64
TRIM28-210ENST00000597618 SNRPEP62304 92 aaKnown RBP4.81□□□□□ -1.64
TRIM28-210ENST00000597618 C12orf57Q99622 126 aa4.81□□□□□ -1.64
TRIM28-210ENST00000597618 IGKV4-1P06312 121 aa4.8□□□□□ -1.64
TRIM28-210ENST00000597618 ATOH7Q8N100 152 aa4.8□□□□□ -1.64
TRIM28-210ENST00000597618 NDUFV3P56181 108 aaKnown RBP4.79□□□□□ -1.64
TRIM28-210ENST00000597618 MDN1Q9NU22 5596 aa4.78□□□□□ -1.64
TRIM28-210ENST00000597618 SNCGO76070 127 aa4.77□□□□□ -1.65
TRIM28-210ENST00000597618 SPINK7P58062 85 aa4.77□□□□□ -1.65
TRIM28-210ENST00000597618 KMT2DO14686 5537 aa4.76□□□□□ -1.65
TRIM28-210ENST00000597618 IGHV6-1A0A0B4J1U7 121 aa4.76□□□□□ -1.65
TRIM28-210ENST00000597618 H3BMG7 143 aa4.76□□□□□ -1.65
TRIM28-210ENST00000597618 HIST3H2BBQ8N257 126 aa4.76□□□□□ -1.65
TRIM28-210ENST00000597618 HIST1H2BLQ99880 126 aa4.76□□□□□ -1.65
TRIM28-210ENST00000597618 A0A1W2PNM2 257 aa4.75□□□□□ -1.65
TRIM28-210ENST00000597618 ZCCHC13Q8WW36 166 aaKnown RBP4.75□□□□□ -1.65
TRIM28-210ENST00000597618 A6NN06 94 aa4.74□□□□□ -1.65
TRIM28-210ENST00000597618 GHRHP01286 108 aa4.74□□□□□ -1.65
TRIM28-210ENST00000597618 S100A2P29034 98 aa4.74□□□□□ -1.65
TRIM28-210ENST00000597618 WFDC13Q8IUB5 93 aa4.74□□□□□ -1.65
TRIM28-210ENST00000597618 HSBP1L1C9JCN9 74 aa4.73□□□□□ -1.65
TRIM28-210ENST00000597618 TRBV7-4A0A0J9YYF1 115 aa4.72□□□□□ -1.65
TRIM28-210ENST00000597618 C8orf87E5RJ46 101 aa4.72□□□□□ -1.65
TRIM28-210ENST00000597618 S100A1P23297 94 aa4.72□□□□□ -1.65
TRIM28-210ENST00000597618 KRTAP5-9P26371 169 aa4.71□□□□□ -1.66
TRIM28-210ENST00000597618 DEFB116Q30KQ4 102 aa4.71□□□□□ -1.66
TRIM28-210ENST00000597618 FAM218AQ96MZ4 157 aa4.71□□□□□ -1.66
TRIM28-210ENST00000597618 LINC00472Q9H8W2 130 aa4.71□□□□□ -1.66
TRIM28-210ENST00000597618 H0YGX0 51 aa4.7□□□□□ -1.66
TRIM28-210ENST00000597618 S100A6P06703 90 aa4.7□□□□□ -1.66
TRIM28-210ENST00000597618 FABP2P12104 132 aa4.7□□□□□ -1.66
TRIM28-210ENST00000597618 RAB37Q96AX2 223 aa4.7□□□□□ -1.66
TRIM28-210ENST00000597618 A0A1B0GVX0 72 aa4.68□□□□□ -1.66
TRIM28-210ENST00000597618 DLEU1O43261 78 aa4.68□□□□□ -1.66
TRIM28-210ENST00000597618 ANKRD29Q8N6D5 301 aa4.68□□□□□ -1.66
TRIM28-210ENST00000597618 COX8AP10176 69 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms